Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0019 and DVUA0020 overlap by 1 nucleotides DVUA0020 and DVUA0020.1 are separated by 154 nucleotides DVUA0020.1 and DVUA0021 are separated by 48 nucleotides
DVUA0019: DVUA0019 - type II DNA modification methyltransferase, putative (TIGR), at 22,786 to 24,444
DVUA0019
DVUA0020: DVUA0020 - type II restriction endonuclease, putative (TIGR), at 24,444 to 25,184
DVUA0020
DVUA0020.1: DVUA0020.1 - SEED: FIG00604339: hypothetical protein, at 25,339 to 26,583
DVUA0020.1
DVUA0021: DVUA0021 - conserved hypothetical protein (TIGR), at 26,632 to 27,693
DVUA0021
Position (kb) 25
26
27 Strain fitness (log2 ratio) -1
0
1 at 24.479 kb on + strand at 24.487 kb on - strand at 24.578 kb on - strand, within DVUA0020 at 24.727 kb on - strand, within DVUA0020 at 24.744 kb on - strand, within DVUA0020 at 24.846 kb on + strand, within DVUA0020 at 24.854 kb on - strand, within DVUA0020 at 24.878 kb on - strand, within DVUA0020 at 24.936 kb on + strand, within DVUA0020 at 24.974 kb on + strand, within DVUA0020 at 25.040 kb on + strand, within DVUA0020 at 25.310 kb on + strand at 25.339 kb on + strand at 25.343 kb on - strand at 25.379 kb on - strand at 25.379 kb on - strand at 25.443 kb on - strand at 25.450 kb on + strand at 25.502 kb on - strand, within DVUA0020.1 at 25.609 kb on - strand, within DVUA0020.1 at 25.713 kb on - strand, within DVUA0020.1 at 25.726 kb on + strand, within DVUA0020.1 at 25.730 kb on - strand, within DVUA0020.1 at 25.751 kb on - strand, within DVUA0020.1 at 25.874 kb on + strand, within DVUA0020.1 at 25.882 kb on - strand, within DVUA0020.1 at 25.882 kb on - strand, within DVUA0020.1 at 25.972 kb on + strand, within DVUA0020.1 at 25.981 kb on - strand, within DVUA0020.1 at 25.981 kb on - strand, within DVUA0020.1 at 26.035 kb on - strand, within DVUA0020.1 at 26.120 kb on + strand, within DVUA0020.1 at 26.136 kb on - strand, within DVUA0020.1 at 26.138 kb on + strand, within DVUA0020.1 at 26.245 kb on - strand, within DVUA0020.1 at 26.270 kb on + strand, within DVUA0020.1 at 26.284 kb on + strand, within DVUA0020.1 at 26.366 kb on + strand, within DVUA0020.1 at 26.369 kb on - strand, within DVUA0020.1 at 26.374 kb on - strand, within DVUA0020.1 at 26.374 kb on - strand, within DVUA0020.1 at 26.384 kb on - strand, within DVUA0020.1 at 26.438 kb on + strand, within DVUA0020.1 at 26.465 kb on + strand at 26.552 kb on + strand at 26.552 kb on + strand at 26.606 kb on + strand at 26.607 kb on - strand at 26.610 kb on + strand at 26.644 kb on + strand at 26.652 kb on - strand at 26.652 kb on - strand at 26.740 kb on + strand, within DVUA0021 at 26.947 kb on + strand, within DVUA0021 at 27.005 kb on - strand, within DVUA0021 at 27.362 kb on - strand, within DVUA0021 at 27.379 kb on - strand, within DVUA0021 at 27.438 kb on - strand, within DVUA0021 at 27.447 kb on - strand, within DVUA0021 at 27.565 kb on + strand, within DVUA0021
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 24,479 + -0.2 24,487 - +0.2 24,578 - DVUA0020 0.18 -0.6 24,727 - DVUA0020 0.38 -0.1 24,744 - DVUA0020 0.40 +0.0 24,846 + DVUA0020 0.54 +0.2 24,854 - DVUA0020 0.55 -0.0 24,878 - DVUA0020 0.59 -0.1 24,936 + DVUA0020 0.66 +0.1 24,974 + DVUA0020 0.72 -0.1 25,040 + DVUA0020 0.80 -0.2 25,310 + -0.2 25,339 + -0.7 25,343 - -0.3 25,379 - +0.9 25,379 - -0.4 25,443 - -0.3 25,450 + +0.1 25,502 - DVUA0020.1 0.13 +0.3 25,609 - DVUA0020.1 0.22 -0.6 25,713 - DVUA0020.1 0.30 +0.4 25,726 + DVUA0020.1 0.31 +0.2 25,730 - DVUA0020.1 0.31 -0.0 25,751 - DVUA0020.1 0.33 +0.1 25,874 + DVUA0020.1 0.43 +0.0 25,882 - DVUA0020.1 0.44 +0.0 25,882 - DVUA0020.1 0.44 -0.3 25,972 + DVUA0020.1 0.51 -0.4 25,981 - DVUA0020.1 0.52 +0.9 25,981 - DVUA0020.1 0.52 -0.4 26,035 - DVUA0020.1 0.56 +1.5 26,120 + DVUA0020.1 0.63 -0.6 26,136 - DVUA0020.1 0.64 +0.1 26,138 + DVUA0020.1 0.64 -0.5 26,245 - DVUA0020.1 0.73 +0.6 26,270 + DVUA0020.1 0.75 +1.3 26,284 + DVUA0020.1 0.76 +0.1 26,366 + DVUA0020.1 0.82 -0.2 26,369 - DVUA0020.1 0.83 +1.0 26,374 - DVUA0020.1 0.83 -0.1 26,374 - DVUA0020.1 0.83 +0.2 26,384 - DVUA0020.1 0.84 +0.3 26,438 + DVUA0020.1 0.88 +1.0 26,465 + -0.2 26,552 + +0.9 26,552 + -0.4 26,606 + -0.3 26,607 - +0.4 26,610 + -0.3 26,644 + -0.0 26,652 - +0.3 26,652 - -0.1 26,740 + DVUA0021 0.10 -0.4 26,947 + DVUA0021 0.30 +0.5 27,005 - DVUA0021 0.35 +0.1 27,362 - DVUA0021 0.69 +0.1 27,379 - DVUA0021 0.70 -0.3 27,438 - DVUA0021 0.76 +0.7 27,447 - DVUA0021 0.77 -1.2 27,565 + DVUA0021 0.88 +0.3
Or see this region's nucleotide sequence