Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF19323

Experiment: Formate/Acetate-Sulfite (60/30-60 mM)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU2630 and DORF19323 are separated by 240 nucleotidesDORF19323 and DVU2631 are separated by 155 nucleotidesDVU2631 and DORF19328 are separated by 65 nucleotides DVU2630: DVU2630 - lipoprotein, putative (TIGR), at 2,746,127 to 2,747,002 DVU2630 DORF19323: DORF19323 - no description, at 2,747,243 to 2,747,410 DORF19323 DVU2631: DVU2631 - hypothetical protein (TIGR), at 2,747,566 to 2,747,937 DVU2631 DORF19328: DORF19328 - no description, at 2,748,003 to 2,748,440 DORF19328 Position (kb) 2747 2748Strain fitness (log2 ratio) -2 -1 0 1at 2746.285 kb on + strand, within DVU2630at 2746.322 kb on - strand, within DVU2630at 2746.332 kb on - strand, within DVU2630at 2746.352 kb on + strand, within DVU2630at 2746.360 kb on + strand, within DVU2630at 2746.368 kb on - strand, within DVU2630at 2746.445 kb on + strand, within DVU2630at 2746.480 kb on + strand, within DVU2630at 2746.513 kb on - strand, within DVU2630at 2746.520 kb on + strand, within DVU2630at 2746.587 kb on - strand, within DVU2630at 2746.623 kb on - strand, within DVU2630at 2746.688 kb on - strand, within DVU2630at 2746.717 kb on + strand, within DVU2630at 2746.821 kb on + strand, within DVU2630at 2746.821 kb on + strand, within DVU2630at 2746.823 kb on - strand, within DVU2630at 2746.859 kb on + strand, within DVU2630at 2746.917 kb on - strandat 2746.920 kb on - strandat 2746.963 kb on - strandat 2746.975 kb on + strandat 2747.006 kb on - strandat 2747.195 kb on + strandat 2747.279 kb on + strand, within DORF19323at 2747.285 kb on - strand, within DORF19323at 2747.297 kb on - strand, within DORF19323at 2747.333 kb on + strand, within DORF19323at 2747.362 kb on + strand, within DORF19323at 2747.413 kb on - strandat 2747.554 kb on - strandat 2747.561 kb on - strandat 2747.561 kb on - strandat 2747.563 kb on + strandat 2747.563 kb on + strandat 2747.566 kb on + strandat 2747.571 kb on - strandat 2747.571 kb on - strandat 2747.576 kb on - strandat 2747.711 kb on + strand, within DVU2631at 2747.746 kb on - strand, within DVU2631at 2747.783 kb on - strand, within DVU2631at 2747.922 kb on + strandat 2747.940 kb on - strandat 2748.085 kb on + strand, within DORF19328at 2748.090 kb on + strand, within DORF19328at 2748.158 kb on + strand, within DORF19328at 2748.183 kb on + strand, within DORF19328at 2748.191 kb on + strand, within DORF19328at 2748.199 kb on - strand, within DORF19328at 2748.199 kb on - strand, within DORF19328at 2748.279 kb on + strand, within DORF19328at 2748.281 kb on - strand, within DORF19328at 2748.323 kb on + strand, within DORF19328at 2748.329 kb on - strand, within DORF19328at 2748.329 kb on - strand, within DORF19328at 2748.345 kb on + strand, within DORF19328

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM)
remove
2,746,285 + DVU2630 0.18 -0.5
2,746,322 - DVU2630 0.22 -1.7
2,746,332 - DVU2630 0.23 +0.2
2,746,352 + DVU2630 0.26 +1.0
2,746,360 + DVU2630 0.27 -0.2
2,746,368 - DVU2630 0.28 -0.2
2,746,445 + DVU2630 0.36 +0.4
2,746,480 + DVU2630 0.40 +0.9
2,746,513 - DVU2630 0.44 -0.7
2,746,520 + DVU2630 0.45 +0.6
2,746,587 - DVU2630 0.53 -0.4
2,746,623 - DVU2630 0.57 -1.0
2,746,688 - DVU2630 0.64 +0.6
2,746,717 + DVU2630 0.67 -0.4
2,746,821 + DVU2630 0.79 +0.5
2,746,821 + DVU2630 0.79 -0.1
2,746,823 - DVU2630 0.79 +1.1
2,746,859 + DVU2630 0.84 -0.1
2,746,917 - -0.9
2,746,920 - -0.3
2,746,963 - +0.6
2,746,975 + +1.6
2,747,006 - -2.1
2,747,195 + +0.6
2,747,279 + DORF19323 0.21 -0.2
2,747,285 - DORF19323 0.25 +0.1
2,747,297 - DORF19323 0.32 +0.0
2,747,333 + DORF19323 0.54 +1.0
2,747,362 + DORF19323 0.71 -0.3
2,747,413 - +0.1
2,747,554 - -0.4
2,747,561 - +0.6
2,747,561 - +0.1
2,747,563 + -0.4
2,747,563 + +0.2
2,747,566 + +0.5
2,747,571 - -0.3
2,747,571 - -0.6
2,747,576 - -0.1
2,747,711 + DVU2631 0.39 +0.1
2,747,746 - DVU2631 0.48 -1.3
2,747,783 - DVU2631 0.58 +0.2
2,747,922 + -0.1
2,747,940 - -0.1
2,748,085 + DORF19328 0.19 -0.3
2,748,090 + DORF19328 0.20 -0.5
2,748,158 + DORF19328 0.35 +0.7
2,748,183 + DORF19328 0.41 -1.2
2,748,191 + DORF19328 0.43 +0.2
2,748,199 - DORF19328 0.45 -0.6
2,748,199 - DORF19328 0.45 +0.6
2,748,279 + DORF19328 0.63 +1.1
2,748,281 - DORF19328 0.63 -0.1
2,748,323 + DORF19328 0.73 +0.3
2,748,329 - DORF19328 0.74 -0.7
2,748,329 - DORF19328 0.74 +1.4
2,748,345 + DORF19328 0.78 -0.4

Or see this region's nucleotide sequence