Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF14879
Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Formate/Acetate-Sulfite (60/30-60 mM) |
---|---|---|---|---|---|
remove | |||||
2,076,585 | + | -0.1 | |||
2,076,603 | - | -0.8 | |||
2,076,619 | + | -0.1 | |||
2,076,629 | - | -0.3 | |||
2,076,645 | - | -0.9 | |||
2,076,670 | - | +0.4 | |||
2,076,813 | + | -0.1 | |||
2,076,857 | - | +0.1 | |||
2,076,857 | - | -0.5 | |||
2,076,902 | - | -0.3 | |||
2,076,902 | - | -0.3 | |||
2,076,960 | + | -1.8 | |||
2,077,062 | - | -0.5 | |||
2,077,083 | - | +0.2 | |||
2,077,244 | + | DVU1996 | 0.18 | -1.3 | |
2,077,379 | + | DVU1996 | 0.59 | -1.5 | |
2,077,470 | + | DVU1996 | 0.87 | -0.1 | |
2,077,479 | - | DVU1996 | 0.89 | -0.7 | |
2,077,874 | + | DORF14879 | 0.23 | -0.0 | |
2,078,046 | - | DORF14879 | 0.34 | +0.4 | |
2,078,293 | + | DORF14879 | 0.50 | -0.1 | |
2,078,734 | - | DORF14879 | 0.79 | -0.0 | |
2,079,263 | + | +0.3 | |||
2,079,287 | - | -0.2 | |||
2,079,296 | + | +0.7 | |||
2,079,299 | - | -0.1 | |||
2,079,419 | + | -1.0 | |||
2,079,419 | + | -0.1 | |||
2,079,582 | + | -0.3 | |||
2,079,637 | - | -0.7 | |||
2,079,677 | + | +0.3 | |||
2,079,677 | + | -1.0 | |||
2,079,680 | - | -1.6 | |||
2,079,680 | - | -1.1 | |||
2,079,680 | - | -0.1 | |||
2,079,763 | - | -1.2 | |||
2,079,776 | + | DVU1999 | 0.10 | +0.2 | |
2,079,834 | - | DVU1999 | 0.13 | -0.0 | |
2,079,910 | + | DVU1999 | 0.16 | +0.7 | |
2,080,022 | - | DVU1999 | 0.22 | -0.5 |
Or see this region's nucleotide sequence