Experiment: Formate/Acetate-Sulfite (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0688 and rnhA are separated by 9 nucleotides rnhA and DORF29743 are separated by 166 nucleotides DORF29743 and DVU0690 are separated by 75 nucleotides DVU0690 and DVU0691 are separated by 14 nucleotides
DVU0688: DVU0688 - hypothetical protein (TIGR), at 763,007 to 763,507
DVU0688
DVU0689: rnhA - ribonuclease HI (TIGR), at 763,517 to 763,987
rnhA
DORF29743: DORF29743 - no description, at 764,154 to 764,273
DORF29743
DVU0690: DVU0690 - conserved hypothetical protein (TIGR), at 764,349 to 765,020
DVU0690
DVU0691: DVU0691 - membrane protein, putative (TIGR), at 765,035 to 765,994
DVU0691
Position (kb) 764
765 Strain fitness (log2 ratio) -1
0
1 at 763.319 kb on - strand, within DVU0688 at 763.374 kb on - strand, within DVU0688 at 763.417 kb on - strand, within DVU0688 at 763.530 kb on + strand at 763.727 kb on + strand, within rnhA at 763.786 kb on - strand, within rnhA at 764.084 kb on + strand at 764.087 kb on - strand at 764.168 kb on + strand, within DORF29743 at 764.230 kb on - strand, within DORF29743 at 764.347 kb on + strand at 764.351 kb on + strand at 764.396 kb on - strand at 764.538 kb on + strand, within DVU0690 at 764.707 kb on + strand, within DVU0690 at 764.730 kb on + strand, within DVU0690 at 764.738 kb on - strand, within DVU0690 at 764.825 kb on - strand, within DVU0690 at 764.837 kb on + strand, within DVU0690 at 764.837 kb on + strand, within DVU0690 at 764.837 kb on + strand, within DVU0690 at 764.845 kb on - strand, within DVU0690 at 764.857 kb on + strand, within DVU0690 at 764.993 kb on + strand at 765.071 kb on - strand at 765.074 kb on + strand at 765.100 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-60 mM) remove 763,319 - DVU0688 0.62 -0.3 763,374 - DVU0688 0.73 -0.2 763,417 - DVU0688 0.82 -0.2 763,530 + +0.0 763,727 + rnhA DVU0689 0.45 +0.5 763,786 - rnhA DVU0689 0.57 +0.3 764,084 + -0.1 764,087 - +0.2 764,168 + DORF29743 0.12 -0.0 764,230 - DORF29743 0.63 +0.7 764,347 + +0.1 764,351 + -0.8 764,396 - +0.5 764,538 + DVU0690 0.28 +0.3 764,707 + DVU0690 0.53 -0.9 764,730 + DVU0690 0.57 -0.0 764,738 - DVU0690 0.58 +0.6 764,825 - DVU0690 0.71 +0.6 764,837 + DVU0690 0.73 +0.1 764,837 + DVU0690 0.73 -0.7 764,837 + DVU0690 0.73 +1.0 764,845 - DVU0690 0.74 -0.8 764,857 + DVU0690 0.76 -0.4 764,993 + -0.0 765,071 - -0.3 765,074 + -0.4 765,100 + +0.7
Or see this region's nucleotide sequence