Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5230.1

Experiment: Xylemvessel barcodes T1L3P4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5229.1 and Xcc-8004.5230.1 are separated by 129 nucleotidesXcc-8004.5230.1 and Xcc-8004.5231.1 are separated by 364 nucleotidesXcc-8004.5231.1 and Xcc-8004.5232.1 overlap by 7 nucleotidesXcc-8004.5232.1 and Xcc-8004.5233.1 overlap by 43 nucleotides Xcc-8004.5229.1: Xcc-8004.5229.1 - ring canal kelch-like protein, at 4,965,163 to 4,966,221 Xcc-8004.5229.1 Xcc-8004.5230.1: Xcc-8004.5230.1 - Gluconolactonase (EC 3.1.1.17), at 4,966,351 to 4,967,388 Xcc-8004.5230.1 Xcc-8004.5231.1: Xcc-8004.5231.1 - hypothetical protein, at 4,967,753 to 4,967,986 Xcc-8004.5231.1 Xcc-8004.5232.1: Xcc-8004.5232.1 - hypothetical protein, at 4,967,980 to 4,968,309 Xcc-8004.5232.1 Xcc-8004.5233.1: Xcc-8004.5233.1 - hypothetical protein, at 4,968,267 to 4,969,223 Xcc-8004.5233.1 Position (kb) 4966 4967 4968Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4965.373 kb on + strand, within Xcc-8004.5229.1at 4965.373 kb on + strand, within Xcc-8004.5229.1at 4965.502 kb on + strand, within Xcc-8004.5229.1at 4965.502 kb on + strand, within Xcc-8004.5229.1at 4965.502 kb on + strand, within Xcc-8004.5229.1at 4965.502 kb on + strand, within Xcc-8004.5229.1at 4965.502 kb on + strand, within Xcc-8004.5229.1at 4965.503 kb on - strand, within Xcc-8004.5229.1at 4965.503 kb on - strand, within Xcc-8004.5229.1at 4965.519 kb on + strand, within Xcc-8004.5229.1at 4965.529 kb on + strand, within Xcc-8004.5229.1at 4965.565 kb on + strand, within Xcc-8004.5229.1at 4965.565 kb on + strand, within Xcc-8004.5229.1at 4965.565 kb on + strand, within Xcc-8004.5229.1at 4965.565 kb on + strand, within Xcc-8004.5229.1at 4965.565 kb on + strand, within Xcc-8004.5229.1at 4965.566 kb on - strand, within Xcc-8004.5229.1at 4965.566 kb on - strand, within Xcc-8004.5229.1at 4965.566 kb on - strand, within Xcc-8004.5229.1at 4965.566 kb on - strand, within Xcc-8004.5229.1at 4965.566 kb on - strand, within Xcc-8004.5229.1at 4965.661 kb on + strand, within Xcc-8004.5229.1at 4965.661 kb on + strand, within Xcc-8004.5229.1at 4965.662 kb on - strand, within Xcc-8004.5229.1at 4965.662 kb on - strand, within Xcc-8004.5229.1at 4965.662 kb on - strand, within Xcc-8004.5229.1at 4965.662 kb on - strand, within Xcc-8004.5229.1at 4965.678 kb on + strand, within Xcc-8004.5229.1at 4965.678 kb on + strand, within Xcc-8004.5229.1at 4965.678 kb on + strand, within Xcc-8004.5229.1at 4965.701 kb on - strand, within Xcc-8004.5229.1at 4965.701 kb on - strand, within Xcc-8004.5229.1at 4965.811 kb on + strand, within Xcc-8004.5229.1at 4965.811 kb on + strand, within Xcc-8004.5229.1at 4965.812 kb on - strand, within Xcc-8004.5229.1at 4965.812 kb on - strand, within Xcc-8004.5229.1at 4965.812 kb on - strand, within Xcc-8004.5229.1at 4965.852 kb on + strand, within Xcc-8004.5229.1at 4965.887 kb on - strand, within Xcc-8004.5229.1at 4965.887 kb on - strand, within Xcc-8004.5229.1at 4965.887 kb on - strand, within Xcc-8004.5229.1at 4965.887 kb on - strand, within Xcc-8004.5229.1at 4966.036 kb on + strand, within Xcc-8004.5229.1at 4966.126 kb on + strandat 4966.126 kb on + strandat 4966.127 kb on - strandat 4966.127 kb on - strandat 4966.127 kb on - strandat 4966.127 kb on - strandat 4966.220 kb on - strandat 4966.245 kb on + strandat 4966.246 kb on - strandat 4966.246 kb on - strandat 4966.246 kb on - strandat 4966.306 kb on + strandat 4966.418 kb on + strandat 4966.418 kb on + strandat 4966.419 kb on - strandat 4966.419 kb on - strandat 4966.419 kb on - strandat 4966.419 kb on - strandat 4966.700 kb on + strand, within Xcc-8004.5230.1at 4966.700 kb on + strand, within Xcc-8004.5230.1at 4966.700 kb on + strand, within Xcc-8004.5230.1at 4966.701 kb on - strand, within Xcc-8004.5230.1at 4966.701 kb on - strand, within Xcc-8004.5230.1at 4966.701 kb on - strand, within Xcc-8004.5230.1at 4966.701 kb on - strand, within Xcc-8004.5230.1at 4966.701 kb on - strand, within Xcc-8004.5230.1at 4966.793 kb on + strand, within Xcc-8004.5230.1at 4967.108 kb on - strand, within Xcc-8004.5230.1at 4967.132 kb on + strand, within Xcc-8004.5230.1at 4967.132 kb on + strand, within Xcc-8004.5230.1at 4967.132 kb on + strand, within Xcc-8004.5230.1at 4967.133 kb on - strand, within Xcc-8004.5230.1at 4967.133 kb on - strand, within Xcc-8004.5230.1at 4967.133 kb on - strand, within Xcc-8004.5230.1at 4967.329 kb on - strandat 4967.391 kb on + strandat 4967.443 kb on + strandat 4967.470 kb on + strandat 4967.471 kb on - strandat 4967.477 kb on - strandat 4967.538 kb on + strandat 4967.538 kb on + strandat 4967.538 kb on + strandat 4967.539 kb on - strandat 4967.539 kb on - strandat 4967.539 kb on - strandat 4967.539 kb on - strandat 4967.565 kb on + strandat 4967.565 kb on + strandat 4967.566 kb on - strandat 4967.566 kb on - strandat 4967.613 kb on + strandat 4967.613 kb on + strandat 4967.614 kb on - strandat 4967.614 kb on - strandat 4967.614 kb on - strandat 4967.617 kb on + strandat 4967.618 kb on - strandat 4967.618 kb on - strandat 4967.618 kb on - strandat 4967.618 kb on - strandat 4967.619 kb on + strandat 4967.620 kb on - strandat 4967.620 kb on - strandat 4967.674 kb on - strandat 4967.695 kb on + strandat 4967.695 kb on + strandat 4967.695 kb on + strandat 4967.696 kb on - strandat 4967.696 kb on - strandat 4967.696 kb on - strandat 4967.696 kb on - strandat 4967.696 kb on - strandat 4967.696 kb on - strandat 4967.700 kb on + strandat 4967.727 kb on + strandat 4967.894 kb on - strand, within Xcc-8004.5231.1at 4967.927 kb on - strand, within Xcc-8004.5231.1at 4967.927 kb on - strand, within Xcc-8004.5231.1at 4967.937 kb on + strand, within Xcc-8004.5231.1at 4967.946 kb on - strand, within Xcc-8004.5231.1at 4967.975 kb on + strandat 4967.975 kb on + strandat 4968.091 kb on + strand, within Xcc-8004.5232.1at 4968.092 kb on - strand, within Xcc-8004.5232.1at 4968.092 kb on - strand, within Xcc-8004.5232.1at 4968.098 kb on + strand, within Xcc-8004.5232.1at 4968.098 kb on + strand, within Xcc-8004.5232.1at 4968.099 kb on - strand, within Xcc-8004.5232.1at 4968.230 kb on + strand, within Xcc-8004.5232.1at 4968.230 kb on + strand, within Xcc-8004.5232.1at 4968.230 kb on + strand, within Xcc-8004.5232.1at 4968.236 kb on - strand, within Xcc-8004.5232.1at 4968.244 kb on + strand, within Xcc-8004.5232.1at 4968.288 kb on + strandat 4968.288 kb on + strandat 4968.288 kb on + strandat 4968.289 kb on - strandat 4968.289 kb on - strandat 4968.290 kb on + strandat 4968.291 kb on - strandat 4968.312 kb on + strandat 4968.312 kb on + strandat 4968.312 kb on + strandat 4968.313 kb on - strandat 4968.313 kb on - strandat 4968.313 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T1L3P4
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4,965,373 + Xcc-8004.5229.1 0.20 -0.9
4,965,373 + Xcc-8004.5229.1 0.20 -2.1
4,965,502 + Xcc-8004.5229.1 0.32 +0.5
4,965,502 + Xcc-8004.5229.1 0.32 -0.8
4,965,502 + Xcc-8004.5229.1 0.32 +0.6
4,965,502 + Xcc-8004.5229.1 0.32 +0.8
4,965,502 + Xcc-8004.5229.1 0.32 -2.4
4,965,503 - Xcc-8004.5229.1 0.32 +0.0
4,965,503 - Xcc-8004.5229.1 0.32 +0.1
4,965,519 + Xcc-8004.5229.1 0.34 -0.0
4,965,529 + Xcc-8004.5229.1 0.35 +0.2
4,965,565 + Xcc-8004.5229.1 0.38 +0.0
4,965,565 + Xcc-8004.5229.1 0.38 -0.7
4,965,565 + Xcc-8004.5229.1 0.38 -2.2
4,965,565 + Xcc-8004.5229.1 0.38 +0.0
4,965,565 + Xcc-8004.5229.1 0.38 +0.5
4,965,566 - Xcc-8004.5229.1 0.38 +0.5
4,965,566 - Xcc-8004.5229.1 0.38 -0.0
4,965,566 - Xcc-8004.5229.1 0.38 -0.2
4,965,566 - Xcc-8004.5229.1 0.38 -0.0
4,965,566 - Xcc-8004.5229.1 0.38 +0.3
4,965,661 + Xcc-8004.5229.1 0.47 +1.6
4,965,661 + Xcc-8004.5229.1 0.47 +0.6
4,965,662 - Xcc-8004.5229.1 0.47 +1.4
4,965,662 - Xcc-8004.5229.1 0.47 -2.1
4,965,662 - Xcc-8004.5229.1 0.47 -0.9
4,965,662 - Xcc-8004.5229.1 0.47 -1.9
4,965,678 + Xcc-8004.5229.1 0.49 -0.8
4,965,678 + Xcc-8004.5229.1 0.49 +1.6
4,965,678 + Xcc-8004.5229.1 0.49 +0.0
4,965,701 - Xcc-8004.5229.1 0.51 -0.0
4,965,701 - Xcc-8004.5229.1 0.51 -0.2
4,965,811 + Xcc-8004.5229.1 0.61 +1.0
4,965,811 + Xcc-8004.5229.1 0.61 -1.8
4,965,812 - Xcc-8004.5229.1 0.61 -0.6
4,965,812 - Xcc-8004.5229.1 0.61 -0.7
4,965,812 - Xcc-8004.5229.1 0.61 +0.6
4,965,852 + Xcc-8004.5229.1 0.65 -0.4
4,965,887 - Xcc-8004.5229.1 0.68 -0.8
4,965,887 - Xcc-8004.5229.1 0.68 +0.2
4,965,887 - Xcc-8004.5229.1 0.68 -1.8
4,965,887 - Xcc-8004.5229.1 0.68 +0.5
4,966,036 + Xcc-8004.5229.1 0.82 +0.7
4,966,126 + -2.4
4,966,126 + -0.1
4,966,127 - -1.9
4,966,127 - -0.6
4,966,127 - +1.5
4,966,127 - -2.3
4,966,220 - +1.4
4,966,245 + +1.1
4,966,246 - +0.6
4,966,246 - -1.7
4,966,246 - -0.4
4,966,306 + -0.8
4,966,418 + -2.0
4,966,418 + -2.4
4,966,419 - -1.9
4,966,419 - +0.6
4,966,419 - -3.4
4,966,419 - -2.0
4,966,700 + Xcc-8004.5230.1 0.34 +1.0
4,966,700 + Xcc-8004.5230.1 0.34 +0.5
4,966,700 + Xcc-8004.5230.1 0.34 -0.8
4,966,701 - Xcc-8004.5230.1 0.34 +0.1
4,966,701 - Xcc-8004.5230.1 0.34 +0.8
4,966,701 - Xcc-8004.5230.1 0.34 -0.2
4,966,701 - Xcc-8004.5230.1 0.34 +0.3
4,966,701 - Xcc-8004.5230.1 0.34 +2.4
4,966,793 + Xcc-8004.5230.1 0.43 -3.4
4,967,108 - Xcc-8004.5230.1 0.73 +0.4
4,967,132 + Xcc-8004.5230.1 0.75 -2.2
4,967,132 + Xcc-8004.5230.1 0.75 -1.7
4,967,132 + Xcc-8004.5230.1 0.75 -2.4
4,967,133 - Xcc-8004.5230.1 0.75 +0.4
4,967,133 - Xcc-8004.5230.1 0.75 -2.0
4,967,133 - Xcc-8004.5230.1 0.75 -1.0
4,967,329 - +1.6
4,967,391 + +1.4
4,967,443 + -2.4
4,967,470 + +2.0
4,967,471 - +1.5
4,967,477 - +0.3
4,967,538 + +0.9
4,967,538 + -1.5
4,967,538 + +0.4
4,967,539 - -1.1
4,967,539 - +1.0
4,967,539 - -0.4
4,967,539 - +1.8
4,967,565 + -0.0
4,967,565 + +1.4
4,967,566 - -1.2
4,967,566 - -1.0
4,967,613 + -0.7
4,967,613 + -0.4
4,967,614 - +0.9
4,967,614 - +0.0
4,967,614 - -2.3
4,967,617 + +2.4
4,967,618 - +0.2
4,967,618 - +0.2
4,967,618 - -0.7
4,967,618 - -2.3
4,967,619 + +0.2
4,967,620 - -1.8
4,967,620 - -0.0
4,967,674 - +1.1
4,967,695 + -1.0
4,967,695 + -0.1
4,967,695 + -1.2
4,967,696 - -0.1
4,967,696 - +0.0
4,967,696 - -0.9
4,967,696 - -0.0
4,967,696 - -0.8
4,967,696 - -2.2
4,967,700 + -0.2
4,967,727 + -0.3
4,967,894 - Xcc-8004.5231.1 0.60 +0.8
4,967,927 - Xcc-8004.5231.1 0.74 -0.2
4,967,927 - Xcc-8004.5231.1 0.74 +0.2
4,967,937 + Xcc-8004.5231.1 0.79 +0.7
4,967,946 - Xcc-8004.5231.1 0.82 -0.9
4,967,975 + -0.3
4,967,975 + -0.2
4,968,091 + Xcc-8004.5232.1 0.34 +2.1
4,968,092 - Xcc-8004.5232.1 0.34 +0.1
4,968,092 - Xcc-8004.5232.1 0.34 -1.3
4,968,098 + Xcc-8004.5232.1 0.36 -1.1
4,968,098 + Xcc-8004.5232.1 0.36 +0.9
4,968,099 - Xcc-8004.5232.1 0.36 -0.5
4,968,230 + Xcc-8004.5232.1 0.76 -1.0
4,968,230 + Xcc-8004.5232.1 0.76 +0.2
4,968,230 + Xcc-8004.5232.1 0.76 -0.6
4,968,236 - Xcc-8004.5232.1 0.78 -1.5
4,968,244 + Xcc-8004.5232.1 0.80 -0.7
4,968,288 + -1.4
4,968,288 + -0.7
4,968,288 + -1.9
4,968,289 - +0.6
4,968,289 - -1.4
4,968,290 + -1.9
4,968,291 - -0.4
4,968,312 + +0.1
4,968,312 + +0.3
4,968,312 + +1.7
4,968,313 - +0.8
4,968,313 - -0.0
4,968,313 - -0.4

Or see this region's nucleotide sequence