Experiment: Xylemvessel barcodes T1L3P4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5108.1 and Xcc-8004.5110.1 are separated by 403 nucleotides Xcc-8004.5110.1 and Xcc-8004.5112.1 are separated by 100 nucleotides Xcc-8004.5112.1 and Xcc-8004.5113.1 are separated by 414 nucleotides Xcc-8004.5113.1 and Xcc-8004.5114.1 are separated by 120 nucleotides
Xcc-8004.5108.1: Xcc-8004.5108.1 - Uncharacterized protein ImpA, at 4,843,592 to 4,844,344
Xcc-8004.5108.1
Xcc-8004.5110.1: Xcc-8004.5110.1 - hypothetical protein, at 4,844,748 to 4,845,194
Xcc-8004.5110.1
Xcc-8004.5112.1: Xcc-8004.5112.1 - Nodulation protein L (EC 2.3.1.-), at 4,845,295 to 4,845,894
Xcc-8004.5112.1
Xcc-8004.5113.1: Xcc-8004.5113.1 - FIG01210009: hypothetical protein, at 4,846,309 to 4,846,626
Xcc-8004.5113.1
Xcc-8004.5114.1: Xcc-8004.5114.1 - ATP-dependent DNA helicase UvrD/PcrA, at 4,846,747 to 4,848,918
Xcc-8004.5114.1
Position (kb) 4845
4846 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4844.370 kb on + strand at 4844.370 kb on + strand at 4844.370 kb on + strand at 4844.371 kb on - strand at 4844.371 kb on - strand at 4844.371 kb on - strand at 4844.426 kb on + strand at 4844.426 kb on + strand at 4844.426 kb on + strand at 4844.426 kb on + strand at 4844.426 kb on + strand at 4844.426 kb on + strand at 4844.427 kb on - strand at 4844.461 kb on + strand at 4844.462 kb on - strand at 4844.462 kb on - strand at 4844.523 kb on + strand at 4844.523 kb on + strand at 4844.523 kb on + strand at 4844.580 kb on + strand at 4844.580 kb on + strand at 4844.580 kb on + strand at 4844.614 kb on + strand at 4844.614 kb on + strand at 4844.614 kb on + strand at 4844.615 kb on - strand at 4844.615 kb on - strand at 4844.677 kb on + strand at 4844.678 kb on - strand at 4844.678 kb on - strand at 4844.696 kb on + strand at 4844.815 kb on - strand, within Xcc-8004.5110.1 at 4845.010 kb on + strand, within Xcc-8004.5110.1 at 4845.055 kb on + strand, within Xcc-8004.5110.1 at 4845.056 kb on - strand, within Xcc-8004.5110.1 at 4845.056 kb on - strand, within Xcc-8004.5110.1 at 4845.056 kb on - strand, within Xcc-8004.5110.1 at 4845.056 kb on - strand, within Xcc-8004.5110.1 at 4845.056 kb on - strand, within Xcc-8004.5110.1 at 4845.056 kb on - strand, within Xcc-8004.5110.1 at 4845.056 kb on - strand, within Xcc-8004.5110.1 at 4845.056 kb on - strand, within Xcc-8004.5110.1 at 4845.056 kb on - strand, within Xcc-8004.5110.1 at 4845.056 kb on - strand, within Xcc-8004.5110.1 at 4845.182 kb on + strand at 4845.182 kb on + strand at 4845.182 kb on + strand at 4845.182 kb on + strand at 4845.183 kb on - strand at 4845.183 kb on - strand at 4845.183 kb on - strand at 4845.183 kb on - strand at 4845.190 kb on + strand at 4845.190 kb on + strand at 4845.190 kb on + strand at 4845.190 kb on + strand at 4845.190 kb on + strand at 4845.190 kb on + strand at 4845.190 kb on + strand at 4845.190 kb on + strand at 4845.190 kb on + strand at 4845.190 kb on + strand at 4845.191 kb on - strand at 4845.191 kb on - strand at 4845.191 kb on - strand at 4845.191 kb on - strand at 4845.191 kb on - strand at 4845.191 kb on - strand at 4845.191 kb on - strand at 4845.191 kb on - strand at 4845.191 kb on - strand at 4845.191 kb on - strand at 4845.257 kb on + strand at 4845.257 kb on + strand at 4845.471 kb on + strand, within Xcc-8004.5112.1 at 4845.471 kb on + strand, within Xcc-8004.5112.1 at 4845.471 kb on + strand, within Xcc-8004.5112.1 at 4845.471 kb on + strand, within Xcc-8004.5112.1 at 4845.471 kb on + strand, within Xcc-8004.5112.1 at 4845.471 kb on + strand, within Xcc-8004.5112.1 at 4845.471 kb on + strand, within Xcc-8004.5112.1 at 4845.472 kb on - strand, within Xcc-8004.5112.1 at 4845.472 kb on - strand, within Xcc-8004.5112.1 at 4845.472 kb on - strand, within Xcc-8004.5112.1 at 4845.472 kb on - strand, within Xcc-8004.5112.1 at 4845.472 kb on - strand, within Xcc-8004.5112.1 at 4845.472 kb on - strand, within Xcc-8004.5112.1 at 4845.472 kb on - strand, within Xcc-8004.5112.1 at 4845.472 kb on - strand, within Xcc-8004.5112.1 at 4845.472 kb on - strand, within Xcc-8004.5112.1 at 4845.472 kb on - strand, within Xcc-8004.5112.1 at 4845.472 kb on - strand, within Xcc-8004.5112.1 at 4845.549 kb on - strand, within Xcc-8004.5112.1 at 4845.549 kb on - strand, within Xcc-8004.5112.1 at 4845.659 kb on + strand, within Xcc-8004.5112.1 at 4845.659 kb on + strand, within Xcc-8004.5112.1 at 4845.659 kb on + strand, within Xcc-8004.5112.1 at 4845.659 kb on + strand, within Xcc-8004.5112.1 at 4845.659 kb on + strand, within Xcc-8004.5112.1 at 4845.659 kb on + strand, within Xcc-8004.5112.1 at 4845.660 kb on - strand, within Xcc-8004.5112.1 at 4845.660 kb on - strand, within Xcc-8004.5112.1 at 4845.660 kb on - strand, within Xcc-8004.5112.1 at 4845.660 kb on - strand, within Xcc-8004.5112.1 at 4845.660 kb on - strand, within Xcc-8004.5112.1 at 4845.665 kb on + strand, within Xcc-8004.5112.1 at 4845.665 kb on + strand, within Xcc-8004.5112.1 at 4845.666 kb on - strand, within Xcc-8004.5112.1 at 4845.773 kb on + strand, within Xcc-8004.5112.1 at 4845.773 kb on + strand, within Xcc-8004.5112.1 at 4845.774 kb on - strand, within Xcc-8004.5112.1 at 4845.774 kb on - strand, within Xcc-8004.5112.1 at 4845.774 kb on - strand, within Xcc-8004.5112.1 at 4845.836 kb on + strand at 4845.894 kb on + strand at 4845.894 kb on + strand at 4845.894 kb on + strand at 4845.894 kb on + strand at 4845.894 kb on + strand at 4845.894 kb on + strand at 4845.895 kb on - strand at 4845.895 kb on - strand at 4845.895 kb on - strand at 4845.895 kb on - strand at 4846.005 kb on - strand at 4846.006 kb on + strand at 4846.006 kb on + strand at 4846.006 kb on + strand at 4846.006 kb on + strand at 4846.006 kb on + strand at 4846.007 kb on - strand at 4846.007 kb on - strand at 4846.007 kb on - strand at 4846.007 kb on - strand at 4846.007 kb on - strand at 4846.007 kb on - strand at 4846.037 kb on + strand at 4846.037 kb on + strand at 4846.037 kb on + strand at 4846.038 kb on - strand at 4846.038 kb on - strand at 4846.040 kb on + strand at 4846.040 kb on + strand at 4846.040 kb on + strand at 4846.041 kb on - strand at 4846.080 kb on + strand at 4846.081 kb on - strand at 4846.102 kb on + strand at 4846.147 kb on + strand at 4846.147 kb on + strand at 4846.147 kb on + strand at 4846.147 kb on + strand at 4846.148 kb on - strand at 4846.148 kb on - strand at 4846.148 kb on - strand at 4846.148 kb on - strand at 4846.148 kb on - strand at 4846.148 kb on - strand at 4846.151 kb on + strand at 4846.151 kb on + strand at 4846.151 kb on + strand at 4846.151 kb on + strand at 4846.151 kb on + strand at 4846.151 kb on + strand at 4846.152 kb on - strand at 4846.152 kb on - strand at 4846.152 kb on - strand at 4846.152 kb on - strand at 4846.152 kb on - strand at 4846.152 kb on - strand at 4846.152 kb on - strand at 4846.152 kb on - strand at 4846.155 kb on - strand at 4846.155 kb on - strand at 4846.155 kb on - strand at 4846.219 kb on + strand at 4846.220 kb on - strand at 4846.220 kb on - strand at 4846.268 kb on - strand at 4846.304 kb on - strand at 4846.364 kb on - strand, within Xcc-8004.5113.1 at 4846.364 kb on - strand, within Xcc-8004.5113.1 at 4846.439 kb on + strand, within Xcc-8004.5113.1 at 4846.439 kb on + strand, within Xcc-8004.5113.1 at 4846.440 kb on - strand, within Xcc-8004.5113.1 at 4846.440 kb on - strand, within Xcc-8004.5113.1 at 4846.454 kb on - strand, within Xcc-8004.5113.1 at 4846.490 kb on + strand, within Xcc-8004.5113.1 at 4846.491 kb on - strand, within Xcc-8004.5113.1 at 4846.491 kb on - strand, within Xcc-8004.5113.1 at 4846.491 kb on - strand, within Xcc-8004.5113.1 at 4846.491 kb on - strand, within Xcc-8004.5113.1 at 4846.491 kb on - strand, within Xcc-8004.5113.1 at 4846.523 kb on + strand, within Xcc-8004.5113.1 at 4846.523 kb on + strand, within Xcc-8004.5113.1 at 4846.524 kb on - strand, within Xcc-8004.5113.1 at 4846.524 kb on - strand, within Xcc-8004.5113.1 at 4846.524 kb on - strand, within Xcc-8004.5113.1 at 4846.524 kb on - strand, within Xcc-8004.5113.1 at 4846.530 kb on + strand, within Xcc-8004.5113.1 at 4846.531 kb on - strand, within Xcc-8004.5113.1 at 4846.531 kb on - strand, within Xcc-8004.5113.1 at 4846.604 kb on + strand at 4846.605 kb on - strand at 4846.704 kb on + strand at 4846.704 kb on + strand at 4846.704 kb on + strand at 4846.704 kb on + strand at 4846.705 kb on - strand at 4846.705 kb on - strand at 4846.705 kb on - strand at 4846.705 kb on - strand at 4846.705 kb on - strand at 4846.736 kb on + strand at 4846.748 kb on + strand at 4846.749 kb on - strand at 4846.769 kb on + strand at 4846.844 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T1L3P4 remove 4,844,370 + +2.3 4,844,370 + +0.0 4,844,370 + -1.9 4,844,371 - +0.4 4,844,371 - +0.5 4,844,371 - +1.3 4,844,426 + +0.3 4,844,426 + -0.6 4,844,426 + +0.3 4,844,426 + +0.2 4,844,426 + -0.8 4,844,426 + +1.0 4,844,427 - +1.1 4,844,461 + +0.2 4,844,462 - -0.3 4,844,462 - -1.5 4,844,523 + +0.9 4,844,523 + -1.6 4,844,523 + -2.8 4,844,580 + +0.6 4,844,580 + -0.9 4,844,580 + -1.9 4,844,614 + -1.3 4,844,614 + -1.0 4,844,614 + +0.9 4,844,615 - -1.5 4,844,615 - +0.1 4,844,677 + -0.5 4,844,678 - +0.9 4,844,678 - -0.3 4,844,696 + +0.4 4,844,815 - Xcc-8004.5110.1 0.15 -0.9 4,845,010 + Xcc-8004.5110.1 0.59 -1.0 4,845,055 + Xcc-8004.5110.1 0.69 -2.5 4,845,056 - Xcc-8004.5110.1 0.69 +1.4 4,845,056 - Xcc-8004.5110.1 0.69 -0.1 4,845,056 - Xcc-8004.5110.1 0.69 +0.4 4,845,056 - Xcc-8004.5110.1 0.69 +0.0 4,845,056 - Xcc-8004.5110.1 0.69 -0.3 4,845,056 - Xcc-8004.5110.1 0.69 -0.4 4,845,056 - Xcc-8004.5110.1 0.69 +0.4 4,845,056 - Xcc-8004.5110.1 0.69 +0.3 4,845,056 - Xcc-8004.5110.1 0.69 +2.6 4,845,056 - Xcc-8004.5110.1 0.69 +0.1 4,845,182 + +0.3 4,845,182 + -3.0 4,845,182 + -0.5 4,845,182 + +0.7 4,845,183 - -1.7 4,845,183 - -1.9 4,845,183 - -1.2 4,845,183 - +0.9 4,845,190 + +0.9 4,845,190 + +0.2 4,845,190 + -0.4 4,845,190 + -0.5 4,845,190 + -1.2 4,845,190 + -1.1 4,845,190 + -0.2 4,845,190 + -0.5 4,845,190 + +0.4 4,845,190 + -0.5 4,845,191 - +1.0 4,845,191 - -0.8 4,845,191 - +0.2 4,845,191 - +0.7 4,845,191 - -0.2 4,845,191 - +0.3 4,845,191 - -1.5 4,845,191 - +0.7 4,845,191 - -0.1 4,845,191 - -1.6 4,845,257 + +0.4 4,845,257 + -1.3 4,845,471 + Xcc-8004.5112.1 0.29 -3.1 4,845,471 + Xcc-8004.5112.1 0.29 +0.2 4,845,471 + Xcc-8004.5112.1 0.29 -0.1 4,845,471 + Xcc-8004.5112.1 0.29 -2.4 4,845,471 + Xcc-8004.5112.1 0.29 +0.0 4,845,471 + Xcc-8004.5112.1 0.29 +0.2 4,845,471 + Xcc-8004.5112.1 0.29 +0.5 4,845,472 - Xcc-8004.5112.1 0.29 +0.4 4,845,472 - Xcc-8004.5112.1 0.29 +1.6 4,845,472 - Xcc-8004.5112.1 0.29 +0.3 4,845,472 - Xcc-8004.5112.1 0.29 -1.3 4,845,472 - Xcc-8004.5112.1 0.29 +1.5 4,845,472 - Xcc-8004.5112.1 0.29 +0.9 4,845,472 - Xcc-8004.5112.1 0.29 -0.3 4,845,472 - Xcc-8004.5112.1 0.29 -0.9 4,845,472 - Xcc-8004.5112.1 0.29 -0.6 4,845,472 - Xcc-8004.5112.1 0.29 -0.9 4,845,472 - Xcc-8004.5112.1 0.29 +0.2 4,845,549 - Xcc-8004.5112.1 0.42 +1.5 4,845,549 - Xcc-8004.5112.1 0.42 -1.2 4,845,659 + Xcc-8004.5112.1 0.61 -1.6 4,845,659 + Xcc-8004.5112.1 0.61 -0.7 4,845,659 + Xcc-8004.5112.1 0.61 -1.1 4,845,659 + Xcc-8004.5112.1 0.61 -0.5 4,845,659 + Xcc-8004.5112.1 0.61 +0.5 4,845,659 + Xcc-8004.5112.1 0.61 -1.1 4,845,660 - Xcc-8004.5112.1 0.61 +0.6 4,845,660 - Xcc-8004.5112.1 0.61 +0.4 4,845,660 - Xcc-8004.5112.1 0.61 -0.4 4,845,660 - Xcc-8004.5112.1 0.61 +0.1 4,845,660 - Xcc-8004.5112.1 0.61 +3.8 4,845,665 + Xcc-8004.5112.1 0.62 -0.7 4,845,665 + Xcc-8004.5112.1 0.62 -1.0 4,845,666 - Xcc-8004.5112.1 0.62 -0.5 4,845,773 + Xcc-8004.5112.1 0.80 -2.2 4,845,773 + Xcc-8004.5112.1 0.80 -1.8 4,845,774 - Xcc-8004.5112.1 0.80 +0.3 4,845,774 - Xcc-8004.5112.1 0.80 +0.2 4,845,774 - Xcc-8004.5112.1 0.80 -0.4 4,845,836 + +1.3 4,845,894 + -2.3 4,845,894 + -1.1 4,845,894 + +0.1 4,845,894 + +0.9 4,845,894 + -0.6 4,845,894 + +1.8 4,845,895 - +2.0 4,845,895 - -1.3 4,845,895 - -1.2 4,845,895 - +1.1 4,846,005 - -1.9 4,846,006 + -0.8 4,846,006 + +1.2 4,846,006 + -1.3 4,846,006 + -0.2 4,846,006 + -0.2 4,846,007 - -0.4 4,846,007 - -2.7 4,846,007 - +0.1 4,846,007 - -0.6 4,846,007 - +0.1 4,846,007 - +1.2 4,846,037 + +0.2 4,846,037 + -0.6 4,846,037 + -0.0 4,846,038 - -1.3 4,846,038 - +0.9 4,846,040 + +0.1 4,846,040 + +2.0 4,846,040 + -0.1 4,846,041 - -1.7 4,846,080 + +0.3 4,846,081 - +0.0 4,846,102 + -0.5 4,846,147 + -0.2 4,846,147 + +0.2 4,846,147 + -1.2 4,846,147 + -0.5 4,846,148 - +0.5 4,846,148 - -1.5 4,846,148 - +0.1 4,846,148 - -0.1 4,846,148 - -3.0 4,846,148 - -0.8 4,846,151 + +1.7 4,846,151 + -1.2 4,846,151 + -0.2 4,846,151 + +2.6 4,846,151 + -1.1 4,846,151 + +0.4 4,846,152 - -0.6 4,846,152 - +1.7 4,846,152 - -0.5 4,846,152 - +1.2 4,846,152 - +2.0 4,846,152 - +0.2 4,846,152 - +0.2 4,846,152 - -0.7 4,846,155 - -0.2 4,846,155 - +0.3 4,846,155 - +1.8 4,846,219 + +0.8 4,846,220 - -1.3 4,846,220 - -0.6 4,846,268 - -0.3 4,846,304 - -0.3 4,846,364 - Xcc-8004.5113.1 0.17 -0.9 4,846,364 - Xcc-8004.5113.1 0.17 +0.2 4,846,439 + Xcc-8004.5113.1 0.41 -0.8 4,846,439 + Xcc-8004.5113.1 0.41 -0.3 4,846,440 - Xcc-8004.5113.1 0.41 -0.9 4,846,440 - Xcc-8004.5113.1 0.41 +1.7 4,846,454 - Xcc-8004.5113.1 0.46 +0.9 4,846,490 + Xcc-8004.5113.1 0.57 -0.2 4,846,491 - Xcc-8004.5113.1 0.57 -1.4 4,846,491 - Xcc-8004.5113.1 0.57 -0.4 4,846,491 - Xcc-8004.5113.1 0.57 +2.0 4,846,491 - Xcc-8004.5113.1 0.57 -0.3 4,846,491 - Xcc-8004.5113.1 0.57 +0.8 4,846,523 + Xcc-8004.5113.1 0.67 +1.5 4,846,523 + Xcc-8004.5113.1 0.67 +0.2 4,846,524 - Xcc-8004.5113.1 0.68 -0.6 4,846,524 - Xcc-8004.5113.1 0.68 +0.3 4,846,524 - Xcc-8004.5113.1 0.68 -1.0 4,846,524 - Xcc-8004.5113.1 0.68 -2.9 4,846,530 + Xcc-8004.5113.1 0.69 -0.1 4,846,531 - Xcc-8004.5113.1 0.70 -0.0 4,846,531 - Xcc-8004.5113.1 0.70 -1.9 4,846,604 + -1.5 4,846,605 - +0.4 4,846,704 + +0.1 4,846,704 + +0.7 4,846,704 + +0.5 4,846,704 + +0.4 4,846,705 - -0.3 4,846,705 - +0.6 4,846,705 - -1.1 4,846,705 - +1.4 4,846,705 - +0.8 4,846,736 + -0.2 4,846,748 + -0.2 4,846,749 - -0.4 4,846,769 + -0.7 4,846,844 + -1.3
Or see this region's nucleotide sequence