Experiment: Xylemvessel barcodes T1L3P4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5007.1 and Xcc-8004.5008.1 are separated by 23 nucleotides Xcc-8004.5008.1 and Xcc-8004.5009.1 are separated by 72 nucleotides Xcc-8004.5009.1 and Xcc-8004.5010.1 are separated by 315 nucleotides
Xcc-8004.5007.1: Xcc-8004.5007.1 - Sensor protein PhoQ (EC 2.7.13.3), at 4,745,238 to 4,746,653
Xcc-8004.5007.1
Xcc-8004.5008.1: Xcc-8004.5008.1 - Two-component system regulatory protein, at 4,746,677 to 4,747,360
Xcc-8004.5008.1
Xcc-8004.5009.1: Xcc-8004.5009.1 - FIG01211818: hypothetical protein, at 4,747,433 to 4,747,810
Xcc-8004.5009.1
Xcc-8004.5010.1: Xcc-8004.5010.1 - tRNA dihydrouridine synthase A, at 4,748,126 to 4,749,226
Xcc-8004.5010.1
Position (kb) 4747
4748 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4747.372 kb on - strand at 4747.372 kb on - strand at 4747.372 kb on - strand at 4747.372 kb on - strand at 4747.372 kb on - strand at 4747.372 kb on - strand at 4747.376 kb on - strand at 4747.376 kb on - strand at 4747.376 kb on - strand at 4747.376 kb on - strand at 4747.376 kb on - strand at 4747.376 kb on - strand at 4747.376 kb on - strand at 4747.376 kb on - strand at 4747.376 kb on - strand at 4747.376 kb on - strand at 4747.376 kb on - strand at 4747.376 kb on - strand at 4747.376 kb on - strand at 4747.405 kb on - strand at 4747.405 kb on - strand at 4747.425 kb on - strand at 4747.425 kb on - strand at 4747.425 kb on - strand at 4747.425 kb on - strand at 4747.425 kb on - strand at 4747.425 kb on - strand at 4747.822 kb on - strand at 4747.940 kb on - strand at 4747.976 kb on + strand at 4747.976 kb on + strand at 4748.009 kb on + strand at 4748.009 kb on + strand at 4748.009 kb on + strand at 4748.009 kb on + strand at 4748.010 kb on - strand at 4748.010 kb on - strand at 4748.010 kb on - strand at 4748.056 kb on + strand at 4748.056 kb on + strand at 4748.056 kb on + strand at 4748.056 kb on + strand at 4748.056 kb on + strand at 4748.056 kb on + strand at 4748.057 kb on - strand at 4748.057 kb on - strand at 4748.057 kb on - strand at 4748.057 kb on - strand at 4748.116 kb on + strand at 4748.116 kb on + strand at 4748.116 kb on + strand at 4748.116 kb on + strand at 4748.117 kb on - strand at 4748.117 kb on - strand at 4748.137 kb on + strand at 4748.137 kb on + strand at 4748.137 kb on + strand at 4748.138 kb on - strand at 4748.325 kb on + strand, within Xcc-8004.5010.1 at 4748.326 kb on - strand, within Xcc-8004.5010.1 at 4748.326 kb on - strand, within Xcc-8004.5010.1 at 4748.334 kb on + strand, within Xcc-8004.5010.1 at 4748.334 kb on + strand, within Xcc-8004.5010.1 at 4748.335 kb on - strand, within Xcc-8004.5010.1 at 4748.335 kb on - strand, within Xcc-8004.5010.1 at 4748.406 kb on + strand, within Xcc-8004.5010.1 at 4748.406 kb on + strand, within Xcc-8004.5010.1 at 4748.406 kb on + strand, within Xcc-8004.5010.1 at 4748.406 kb on + strand, within Xcc-8004.5010.1 at 4748.407 kb on - strand, within Xcc-8004.5010.1 at 4748.419 kb on - strand, within Xcc-8004.5010.1 at 4748.419 kb on - strand, within Xcc-8004.5010.1 at 4748.550 kb on + strand, within Xcc-8004.5010.1 at 4748.550 kb on + strand, within Xcc-8004.5010.1 at 4748.551 kb on - strand, within Xcc-8004.5010.1 at 4748.679 kb on + strand, within Xcc-8004.5010.1 at 4748.680 kb on - strand, within Xcc-8004.5010.1 at 4748.680 kb on - strand, within Xcc-8004.5010.1 at 4748.680 kb on - strand, within Xcc-8004.5010.1 at 4748.680 kb on - strand, within Xcc-8004.5010.1 at 4748.680 kb on - strand, within Xcc-8004.5010.1 at 4748.680 kb on - strand, within Xcc-8004.5010.1 at 4748.680 kb on - strand, within Xcc-8004.5010.1 at 4748.720 kb on - strand, within Xcc-8004.5010.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T1L3P4 remove 4,747,372 - +1.6 4,747,372 - -0.1 4,747,372 - -1.5 4,747,372 - -1.1 4,747,372 - -1.9 4,747,372 - +1.5 4,747,376 - -1.2 4,747,376 - -2.0 4,747,376 - +2.3 4,747,376 - -0.1 4,747,376 - +0.3 4,747,376 - -2.5 4,747,376 - -1.3 4,747,376 - -0.5 4,747,376 - +0.2 4,747,376 - -0.8 4,747,376 - +1.4 4,747,376 - +0.8 4,747,376 - +1.4 4,747,405 - +0.3 4,747,405 - +0.8 4,747,425 - +0.1 4,747,425 - -0.7 4,747,425 - +0.3 4,747,425 - -1.9 4,747,425 - -2.2 4,747,425 - -0.6 4,747,822 - -0.1 4,747,940 - +0.2 4,747,976 + +0.6 4,747,976 + +0.3 4,748,009 + -0.5 4,748,009 + +1.5 4,748,009 + -0.6 4,748,009 + +1.2 4,748,010 - +0.2 4,748,010 - +0.5 4,748,010 - +1.1 4,748,056 + +0.6 4,748,056 + +0.1 4,748,056 + +0.2 4,748,056 + -1.0 4,748,056 + +1.3 4,748,056 + -2.1 4,748,057 - -0.3 4,748,057 - +0.3 4,748,057 - -3.4 4,748,057 - +1.3 4,748,116 + +0.7 4,748,116 + +0.3 4,748,116 + -1.6 4,748,116 + -0.3 4,748,117 - -2.0 4,748,117 - +0.6 4,748,137 + +0.5 4,748,137 + -0.6 4,748,137 + +1.7 4,748,138 - -2.5 4,748,325 + Xcc-8004.5010.1 0.18 -0.3 4,748,326 - Xcc-8004.5010.1 0.18 +0.3 4,748,326 - Xcc-8004.5010.1 0.18 +0.2 4,748,334 + Xcc-8004.5010.1 0.19 +0.1 4,748,334 + Xcc-8004.5010.1 0.19 -1.4 4,748,335 - Xcc-8004.5010.1 0.19 -1.6 4,748,335 - Xcc-8004.5010.1 0.19 +0.5 4,748,406 + Xcc-8004.5010.1 0.25 -0.5 4,748,406 + Xcc-8004.5010.1 0.25 +2.0 4,748,406 + Xcc-8004.5010.1 0.25 +2.8 4,748,406 + Xcc-8004.5010.1 0.25 +0.5 4,748,407 - Xcc-8004.5010.1 0.26 +3.0 4,748,419 - Xcc-8004.5010.1 0.27 -0.8 4,748,419 - Xcc-8004.5010.1 0.27 -0.4 4,748,550 + Xcc-8004.5010.1 0.39 +0.1 4,748,550 + Xcc-8004.5010.1 0.39 +1.4 4,748,551 - Xcc-8004.5010.1 0.39 -1.0 4,748,679 + Xcc-8004.5010.1 0.50 -1.1 4,748,680 - Xcc-8004.5010.1 0.50 +0.4 4,748,680 - Xcc-8004.5010.1 0.50 -0.5 4,748,680 - Xcc-8004.5010.1 0.50 -0.4 4,748,680 - Xcc-8004.5010.1 0.50 +0.8 4,748,680 - Xcc-8004.5010.1 0.50 -1.3 4,748,680 - Xcc-8004.5010.1 0.50 +0.7 4,748,680 - Xcc-8004.5010.1 0.50 -1.2 4,748,720 - Xcc-8004.5010.1 0.54 -0.5
Or see this region's nucleotide sequence