Experiment: Xylemvessel barcodes T1L3P4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4747.1 and Xcc-8004.4748.1 are separated by 40 nucleotides Xcc-8004.4748.1 and Xcc-8004.4750.1 are separated by 26 nucleotides Xcc-8004.4750.1 and Xcc-8004.4752.1 are separated by 180 nucleotides
Xcc-8004.4747.1: Xcc-8004.4747.1 - Protein of unknown function Smg, at 4,517,920 to 4,518,393
Xcc-8004.4747.1
Xcc-8004.4748.1: Xcc-8004.4748.1 - fimbrial protein, at 4,518,434 to 4,519,174
Xcc-8004.4748.1
Xcc-8004.4750.1: Xcc-8004.4750.1 - FIG01210152: hypothetical protein, at 4,519,201 to 4,520,346
Xcc-8004.4750.1
Xcc-8004.4752.1: Xcc-8004.4752.1 - DNA topoisomerase I (EC 5.99.1.2), at 4,520,527 to 4,523,022
Xcc-8004.4752.1
Position (kb) 4519
4520
4521 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4518.340 kb on + strand, within Xcc-8004.4747.1 at 4518.340 kb on + strand, within Xcc-8004.4747.1 at 4518.341 kb on - strand, within Xcc-8004.4747.1 at 4518.341 kb on - strand, within Xcc-8004.4747.1 at 4518.341 kb on - strand, within Xcc-8004.4747.1 at 4518.341 kb on - strand, within Xcc-8004.4747.1 at 4518.386 kb on + strand at 4518.386 kb on + strand at 4518.387 kb on - strand at 4518.387 kb on - strand at 4518.446 kb on + strand at 4518.446 kb on + strand at 4518.446 kb on + strand at 4518.446 kb on + strand at 4518.446 kb on + strand at 4518.446 kb on + strand at 4518.446 kb on + strand at 4518.446 kb on + strand at 4518.446 kb on + strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.447 kb on - strand at 4518.449 kb on + strand at 4518.449 kb on + strand at 4518.449 kb on + strand at 4518.449 kb on + strand at 4518.449 kb on + strand at 4518.449 kb on + strand at 4518.450 kb on - strand at 4518.509 kb on + strand, within Xcc-8004.4748.1 at 4518.509 kb on + strand, within Xcc-8004.4748.1 at 4518.510 kb on - strand, within Xcc-8004.4748.1 at 4518.510 kb on - strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.556 kb on + strand, within Xcc-8004.4748.1 at 4518.557 kb on - strand, within Xcc-8004.4748.1 at 4518.557 kb on - strand, within Xcc-8004.4748.1 at 4518.557 kb on - strand, within Xcc-8004.4748.1 at 4518.557 kb on - strand, within Xcc-8004.4748.1 at 4518.557 kb on - strand, within Xcc-8004.4748.1 at 4518.557 kb on - strand, within Xcc-8004.4748.1 at 4518.557 kb on - strand, within Xcc-8004.4748.1 at 4518.721 kb on + strand, within Xcc-8004.4748.1 at 4518.721 kb on + strand, within Xcc-8004.4748.1 at 4518.722 kb on - strand, within Xcc-8004.4748.1 at 4518.834 kb on - strand, within Xcc-8004.4748.1 at 4518.834 kb on - strand, within Xcc-8004.4748.1 at 4518.834 kb on - strand, within Xcc-8004.4748.1 at 4518.842 kb on + strand, within Xcc-8004.4748.1 at 4518.842 kb on + strand, within Xcc-8004.4748.1 at 4518.842 kb on + strand, within Xcc-8004.4748.1 at 4518.842 kb on + strand, within Xcc-8004.4748.1 at 4518.843 kb on - strand, within Xcc-8004.4748.1 at 4518.843 kb on - strand, within Xcc-8004.4748.1 at 4518.843 kb on - strand, within Xcc-8004.4748.1 at 4518.843 kb on - strand, within Xcc-8004.4748.1 at 4518.843 kb on - strand, within Xcc-8004.4748.1 at 4518.891 kb on + strand, within Xcc-8004.4748.1 at 4518.892 kb on - strand, within Xcc-8004.4748.1 at 4518.892 kb on - strand, within Xcc-8004.4748.1 at 4518.974 kb on + strand, within Xcc-8004.4748.1 at 4518.975 kb on - strand, within Xcc-8004.4748.1 at 4518.975 kb on - strand, within Xcc-8004.4748.1 at 4519.173 kb on - strand at 4519.200 kb on + strand at 4519.200 kb on + strand at 4519.200 kb on + strand at 4519.200 kb on + strand at 4519.200 kb on + strand at 4519.200 kb on + strand at 4519.200 kb on + strand at 4519.200 kb on + strand at 4519.201 kb on - strand at 4519.201 kb on - strand at 4519.201 kb on - strand at 4519.201 kb on - strand at 4519.201 kb on - strand at 4519.201 kb on - strand at 4519.201 kb on - strand at 4519.201 kb on - strand at 4519.213 kb on + strand at 4519.213 kb on + strand at 4519.213 kb on + strand at 4519.213 kb on + strand at 4519.213 kb on + strand at 4519.213 kb on + strand at 4519.213 kb on + strand at 4519.213 kb on + strand at 4519.214 kb on - strand at 4519.214 kb on - strand at 4519.214 kb on - strand at 4519.214 kb on - strand at 4519.214 kb on - strand at 4519.214 kb on - strand at 4519.214 kb on - strand at 4519.214 kb on - strand at 4519.216 kb on + strand at 4519.216 kb on + strand at 4519.216 kb on + strand at 4519.216 kb on + strand at 4519.216 kb on + strand at 4519.216 kb on + strand at 4519.216 kb on + strand at 4519.217 kb on - strand at 4519.217 kb on - strand at 4519.605 kb on + strand, within Xcc-8004.4750.1 at 4519.606 kb on - strand, within Xcc-8004.4750.1 at 4519.747 kb on + strand, within Xcc-8004.4750.1 at 4519.813 kb on + strand, within Xcc-8004.4750.1 at 4519.813 kb on + strand, within Xcc-8004.4750.1 at 4519.813 kb on + strand, within Xcc-8004.4750.1 at 4519.814 kb on - strand, within Xcc-8004.4750.1 at 4519.814 kb on - strand, within Xcc-8004.4750.1 at 4519.814 kb on - strand, within Xcc-8004.4750.1 at 4519.814 kb on - strand, within Xcc-8004.4750.1 at 4519.814 kb on - strand, within Xcc-8004.4750.1 at 4519.814 kb on - strand, within Xcc-8004.4750.1 at 4519.814 kb on - strand, within Xcc-8004.4750.1 at 4519.924 kb on + strand, within Xcc-8004.4750.1 at 4519.925 kb on - strand, within Xcc-8004.4750.1 at 4519.925 kb on - strand, within Xcc-8004.4750.1 at 4519.925 kb on - strand, within Xcc-8004.4750.1 at 4519.954 kb on + strand, within Xcc-8004.4750.1 at 4519.954 kb on + strand, within Xcc-8004.4750.1 at 4519.955 kb on - strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.080 kb on + strand, within Xcc-8004.4750.1 at 4520.081 kb on - strand, within Xcc-8004.4750.1 at 4520.081 kb on - strand, within Xcc-8004.4750.1 at 4520.081 kb on - strand, within Xcc-8004.4750.1 at 4520.081 kb on - strand, within Xcc-8004.4750.1 at 4520.081 kb on - strand, within Xcc-8004.4750.1 at 4520.081 kb on - strand, within Xcc-8004.4750.1 at 4520.081 kb on - strand, within Xcc-8004.4750.1 at 4520.081 kb on - strand, within Xcc-8004.4750.1 at 4520.081 kb on - strand, within Xcc-8004.4750.1 at 4520.081 kb on - strand, within Xcc-8004.4750.1 at 4520.081 kb on - strand, within Xcc-8004.4750.1 at 4520.081 kb on - strand, within Xcc-8004.4750.1 at 4520.209 kb on + strand, within Xcc-8004.4750.1 at 4520.209 kb on + strand, within Xcc-8004.4750.1 at 4520.210 kb on - strand, within Xcc-8004.4750.1 at 4520.210 kb on - strand, within Xcc-8004.4750.1 at 4520.210 kb on - strand, within Xcc-8004.4750.1 at 4520.210 kb on - strand, within Xcc-8004.4750.1 at 4520.210 kb on - strand, within Xcc-8004.4750.1 at 4520.275 kb on + strand at 4520.275 kb on + strand at 4520.276 kb on - strand at 4520.276 kb on - strand at 4520.276 kb on - strand at 4520.276 kb on - strand at 4520.276 kb on - strand at 4520.276 kb on - strand at 4520.276 kb on - strand at 4520.276 kb on - strand at 4520.276 kb on - strand at 4520.276 kb on - strand at 4520.276 kb on - strand at 4520.396 kb on + strand at 4520.396 kb on + strand at 4520.397 kb on - strand at 4520.397 kb on - strand at 4520.397 kb on - strand at 4520.397 kb on - strand at 4520.397 kb on - strand at 4520.397 kb on - strand at 4520.399 kb on + strand at 4520.400 kb on - strand at 4520.400 kb on - strand at 4520.479 kb on + strand at 4520.479 kb on + strand at 4520.479 kb on + strand at 4520.489 kb on + strand at 4520.489 kb on + strand at 4520.489 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T1L3P4 remove 4,518,340 + Xcc-8004.4747.1 0.89 +0.8 4,518,340 + Xcc-8004.4747.1 0.89 -0.4 4,518,341 - Xcc-8004.4747.1 0.89 -0.0 4,518,341 - Xcc-8004.4747.1 0.89 +0.1 4,518,341 - Xcc-8004.4747.1 0.89 +0.2 4,518,341 - Xcc-8004.4747.1 0.89 -1.4 4,518,386 + -2.3 4,518,386 + +0.9 4,518,387 - -1.2 4,518,387 - -1.8 4,518,446 + +1.0 4,518,446 + +0.1 4,518,446 + +1.4 4,518,446 + +0.4 4,518,446 + -2.5 4,518,446 + -2.6 4,518,446 + +0.9 4,518,446 + +0.5 4,518,446 + +1.2 4,518,447 - -1.0 4,518,447 - -0.1 4,518,447 - -2.9 4,518,447 - -3.0 4,518,447 - -1.7 4,518,447 - -0.3 4,518,447 - -0.2 4,518,447 - +0.2 4,518,447 - -1.9 4,518,447 - +1.5 4,518,447 - -2.2 4,518,447 - -1.4 4,518,447 - +0.9 4,518,447 - -0.1 4,518,449 + -0.7 4,518,449 + -0.2 4,518,449 + -0.2 4,518,449 + -0.4 4,518,449 + -0.8 4,518,449 + -0.2 4,518,450 - +0.0 4,518,509 + Xcc-8004.4748.1 0.10 +0.8 4,518,509 + Xcc-8004.4748.1 0.10 -1.5 4,518,510 - Xcc-8004.4748.1 0.10 -0.4 4,518,510 - Xcc-8004.4748.1 0.10 -0.3 4,518,556 + Xcc-8004.4748.1 0.16 +0.8 4,518,556 + Xcc-8004.4748.1 0.16 -0.8 4,518,556 + Xcc-8004.4748.1 0.16 +0.6 4,518,556 + Xcc-8004.4748.1 0.16 +0.7 4,518,556 + Xcc-8004.4748.1 0.16 +0.7 4,518,556 + Xcc-8004.4748.1 0.16 -1.0 4,518,556 + Xcc-8004.4748.1 0.16 +0.8 4,518,556 + Xcc-8004.4748.1 0.16 -1.6 4,518,556 + Xcc-8004.4748.1 0.16 -1.2 4,518,556 + Xcc-8004.4748.1 0.16 -0.6 4,518,557 - Xcc-8004.4748.1 0.17 -0.6 4,518,557 - Xcc-8004.4748.1 0.17 +0.8 4,518,557 - Xcc-8004.4748.1 0.17 -0.5 4,518,557 - Xcc-8004.4748.1 0.17 -0.7 4,518,557 - Xcc-8004.4748.1 0.17 -1.9 4,518,557 - Xcc-8004.4748.1 0.17 -0.4 4,518,557 - Xcc-8004.4748.1 0.17 -0.1 4,518,721 + Xcc-8004.4748.1 0.39 -1.5 4,518,721 + Xcc-8004.4748.1 0.39 +0.8 4,518,722 - Xcc-8004.4748.1 0.39 +1.3 4,518,834 - Xcc-8004.4748.1 0.54 -1.6 4,518,834 - Xcc-8004.4748.1 0.54 -1.1 4,518,834 - Xcc-8004.4748.1 0.54 +0.8 4,518,842 + Xcc-8004.4748.1 0.55 +0.7 4,518,842 + Xcc-8004.4748.1 0.55 +0.2 4,518,842 + Xcc-8004.4748.1 0.55 +1.0 4,518,842 + Xcc-8004.4748.1 0.55 +0.8 4,518,843 - Xcc-8004.4748.1 0.55 -0.6 4,518,843 - Xcc-8004.4748.1 0.55 -0.7 4,518,843 - Xcc-8004.4748.1 0.55 -1.0 4,518,843 - Xcc-8004.4748.1 0.55 -1.2 4,518,843 - Xcc-8004.4748.1 0.55 +1.2 4,518,891 + Xcc-8004.4748.1 0.62 -1.9 4,518,892 - Xcc-8004.4748.1 0.62 -1.1 4,518,892 - Xcc-8004.4748.1 0.62 -0.4 4,518,974 + Xcc-8004.4748.1 0.73 +1.2 4,518,975 - Xcc-8004.4748.1 0.73 +0.3 4,518,975 - Xcc-8004.4748.1 0.73 -1.0 4,519,173 - -0.8 4,519,200 + +0.9 4,519,200 + -0.3 4,519,200 + -1.6 4,519,200 + +1.2 4,519,200 + -1.4 4,519,200 + -0.6 4,519,200 + +1.1 4,519,200 + +0.3 4,519,201 - -1.6 4,519,201 - -0.5 4,519,201 - -0.8 4,519,201 - +0.3 4,519,201 - -1.0 4,519,201 - +0.0 4,519,201 - -1.6 4,519,201 - +0.1 4,519,213 + +0.1 4,519,213 + -0.4 4,519,213 + -0.8 4,519,213 + +0.9 4,519,213 + -0.2 4,519,213 + +1.1 4,519,213 + -0.7 4,519,213 + +1.1 4,519,214 - +0.6 4,519,214 - +0.1 4,519,214 - -0.3 4,519,214 - -1.5 4,519,214 - -0.5 4,519,214 - -1.9 4,519,214 - +1.4 4,519,214 - -0.3 4,519,216 + +0.0 4,519,216 + +0.8 4,519,216 + -0.9 4,519,216 + +0.8 4,519,216 + -1.9 4,519,216 + +1.4 4,519,216 + +0.8 4,519,217 - -0.3 4,519,217 - -1.5 4,519,605 + Xcc-8004.4750.1 0.35 +0.2 4,519,606 - Xcc-8004.4750.1 0.35 +0.1 4,519,747 + Xcc-8004.4750.1 0.48 -0.6 4,519,813 + Xcc-8004.4750.1 0.53 +1.3 4,519,813 + Xcc-8004.4750.1 0.53 -0.0 4,519,813 + Xcc-8004.4750.1 0.53 -1.2 4,519,814 - Xcc-8004.4750.1 0.53 -0.7 4,519,814 - Xcc-8004.4750.1 0.53 -0.1 4,519,814 - Xcc-8004.4750.1 0.53 -0.5 4,519,814 - Xcc-8004.4750.1 0.53 +0.3 4,519,814 - Xcc-8004.4750.1 0.53 -1.8 4,519,814 - Xcc-8004.4750.1 0.53 +0.0 4,519,814 - Xcc-8004.4750.1 0.53 +0.8 4,519,924 + Xcc-8004.4750.1 0.63 +0.8 4,519,925 - Xcc-8004.4750.1 0.63 +0.8 4,519,925 - Xcc-8004.4750.1 0.63 -2.0 4,519,925 - Xcc-8004.4750.1 0.63 +0.9 4,519,954 + Xcc-8004.4750.1 0.66 +2.0 4,519,954 + Xcc-8004.4750.1 0.66 -0.7 4,519,955 - Xcc-8004.4750.1 0.66 -0.5 4,520,080 + Xcc-8004.4750.1 0.77 +2.3 4,520,080 + Xcc-8004.4750.1 0.77 +0.4 4,520,080 + Xcc-8004.4750.1 0.77 -1.7 4,520,080 + Xcc-8004.4750.1 0.77 -0.8 4,520,080 + Xcc-8004.4750.1 0.77 -0.3 4,520,080 + Xcc-8004.4750.1 0.77 -0.5 4,520,080 + Xcc-8004.4750.1 0.77 +0.0 4,520,080 + Xcc-8004.4750.1 0.77 -1.6 4,520,080 + Xcc-8004.4750.1 0.77 -0.6 4,520,080 + Xcc-8004.4750.1 0.77 +0.3 4,520,080 + Xcc-8004.4750.1 0.77 -0.6 4,520,080 + Xcc-8004.4750.1 0.77 +1.4 4,520,080 + Xcc-8004.4750.1 0.77 +0.5 4,520,080 + Xcc-8004.4750.1 0.77 +0.9 4,520,080 + Xcc-8004.4750.1 0.77 -0.6 4,520,081 - Xcc-8004.4750.1 0.77 -1.6 4,520,081 - Xcc-8004.4750.1 0.77 +1.0 4,520,081 - Xcc-8004.4750.1 0.77 +1.1 4,520,081 - Xcc-8004.4750.1 0.77 -0.2 4,520,081 - Xcc-8004.4750.1 0.77 -1.1 4,520,081 - Xcc-8004.4750.1 0.77 -2.0 4,520,081 - Xcc-8004.4750.1 0.77 -0.7 4,520,081 - Xcc-8004.4750.1 0.77 -0.5 4,520,081 - Xcc-8004.4750.1 0.77 -2.2 4,520,081 - Xcc-8004.4750.1 0.77 -0.6 4,520,081 - Xcc-8004.4750.1 0.77 -3.0 4,520,081 - Xcc-8004.4750.1 0.77 +0.3 4,520,209 + Xcc-8004.4750.1 0.88 -0.1 4,520,209 + Xcc-8004.4750.1 0.88 -0.2 4,520,210 - Xcc-8004.4750.1 0.88 +0.3 4,520,210 - Xcc-8004.4750.1 0.88 -0.3 4,520,210 - Xcc-8004.4750.1 0.88 -1.5 4,520,210 - Xcc-8004.4750.1 0.88 +2.2 4,520,210 - Xcc-8004.4750.1 0.88 +2.7 4,520,275 + +0.6 4,520,275 + +0.7 4,520,276 - +1.2 4,520,276 - +0.2 4,520,276 - -1.6 4,520,276 - -1.8 4,520,276 - +0.4 4,520,276 - +0.5 4,520,276 - -1.2 4,520,276 - -2.1 4,520,276 - -2.7 4,520,276 - -2.6 4,520,276 - -1.4 4,520,396 + -0.3 4,520,396 + +0.2 4,520,397 - -1.0 4,520,397 - +1.7 4,520,397 - +1.1 4,520,397 - -0.6 4,520,397 - -0.6 4,520,397 - +1.5 4,520,399 + +1.3 4,520,400 - +1.4 4,520,400 - -1.2 4,520,479 + +1.4 4,520,479 + -1.0 4,520,479 + +0.4 4,520,489 + +1.7 4,520,489 + -0.7 4,520,489 + -1.0
Or see this region's nucleotide sequence