Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4735.1

Experiment: Xylemvessel barcodes T1L3P4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4734.1 and Xcc-8004.4735.1 are separated by 37 nucleotidesXcc-8004.4735.1 and Xcc-8004.4736.1 overlap by 4 nucleotides Xcc-8004.4734.1: Xcc-8004.4734.1 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25), at 4,503,941 to 4,505,074 Xcc-8004.4734.1 Xcc-8004.4735.1: Xcc-8004.4735.1 - FIG01210211: hypothetical protein, at 4,505,112 to 4,505,690 Xcc-8004.4735.1 Xcc-8004.4736.1: Xcc-8004.4736.1 - Possibly related to ydbT, at 4,505,687 to 4,507,189 Xcc-8004.4736.1 Position (kb) 4505 4506Strain fitness (log2 ratio) -2 -1 0 1 2at 4505.072 kb on + strandat 4505.073 kb on - strandat 4505.073 kb on - strandat 4505.073 kb on - strandat 4505.073 kb on - strandat 4505.111 kb on + strandat 4505.256 kb on + strand, within Xcc-8004.4735.1at 4505.256 kb on + strand, within Xcc-8004.4735.1at 4505.256 kb on + strand, within Xcc-8004.4735.1at 4505.256 kb on + strand, within Xcc-8004.4735.1at 4505.256 kb on + strand, within Xcc-8004.4735.1at 4505.257 kb on - strand, within Xcc-8004.4735.1at 4505.257 kb on - strand, within Xcc-8004.4735.1at 4505.257 kb on - strand, within Xcc-8004.4735.1at 4505.257 kb on - strand, within Xcc-8004.4735.1at 4505.257 kb on - strand, within Xcc-8004.4735.1at 4505.257 kb on - strand, within Xcc-8004.4735.1at 4505.257 kb on - strand, within Xcc-8004.4735.1at 4505.257 kb on - strand, within Xcc-8004.4735.1at 4505.260 kb on + strand, within Xcc-8004.4735.1at 4505.260 kb on + strand, within Xcc-8004.4735.1at 4505.261 kb on - strand, within Xcc-8004.4735.1at 4505.261 kb on - strand, within Xcc-8004.4735.1at 4505.261 kb on - strand, within Xcc-8004.4735.1at 4505.346 kb on + strand, within Xcc-8004.4735.1at 4505.347 kb on - strand, within Xcc-8004.4735.1at 4505.372 kb on - strand, within Xcc-8004.4735.1at 4505.576 kb on + strand, within Xcc-8004.4735.1at 4505.894 kb on + strand, within Xcc-8004.4736.1at 4505.895 kb on - strand, within Xcc-8004.4736.1at 4505.895 kb on - strand, within Xcc-8004.4736.1at 4505.895 kb on - strand, within Xcc-8004.4736.1at 4505.903 kb on + strand, within Xcc-8004.4736.1at 4505.903 kb on + strand, within Xcc-8004.4736.1at 4505.903 kb on + strand, within Xcc-8004.4736.1at 4505.903 kb on + strand, within Xcc-8004.4736.1at 4505.903 kb on + strand, within Xcc-8004.4736.1at 4505.903 kb on + strand, within Xcc-8004.4736.1at 4505.903 kb on + strand, within Xcc-8004.4736.1at 4505.903 kb on + strand, within Xcc-8004.4736.1at 4505.903 kb on + strand, within Xcc-8004.4736.1at 4505.903 kb on + strand, within Xcc-8004.4736.1at 4505.904 kb on - strand, within Xcc-8004.4736.1at 4505.904 kb on - strand, within Xcc-8004.4736.1at 4505.904 kb on - strand, within Xcc-8004.4736.1at 4505.904 kb on - strand, within Xcc-8004.4736.1at 4506.096 kb on + strand, within Xcc-8004.4736.1at 4506.284 kb on + strand, within Xcc-8004.4736.1at 4506.284 kb on + strand, within Xcc-8004.4736.1at 4506.284 kb on + strand, within Xcc-8004.4736.1at 4506.284 kb on + strand, within Xcc-8004.4736.1at 4506.284 kb on + strand, within Xcc-8004.4736.1at 4506.285 kb on - strand, within Xcc-8004.4736.1at 4506.285 kb on - strand, within Xcc-8004.4736.1at 4506.285 kb on - strand, within Xcc-8004.4736.1at 4506.344 kb on + strand, within Xcc-8004.4736.1at 4506.350 kb on + strand, within Xcc-8004.4736.1at 4506.350 kb on + strand, within Xcc-8004.4736.1at 4506.350 kb on + strand, within Xcc-8004.4736.1at 4506.350 kb on + strand, within Xcc-8004.4736.1at 4506.350 kb on + strand, within Xcc-8004.4736.1at 4506.350 kb on + strand, within Xcc-8004.4736.1at 4506.350 kb on + strand, within Xcc-8004.4736.1at 4506.350 kb on + strand, within Xcc-8004.4736.1at 4506.351 kb on - strand, within Xcc-8004.4736.1at 4506.351 kb on - strand, within Xcc-8004.4736.1at 4506.351 kb on - strand, within Xcc-8004.4736.1at 4506.351 kb on - strand, within Xcc-8004.4736.1at 4506.351 kb on - strand, within Xcc-8004.4736.1at 4506.351 kb on - strand, within Xcc-8004.4736.1at 4506.464 kb on + strand, within Xcc-8004.4736.1at 4506.464 kb on + strand, within Xcc-8004.4736.1at 4506.464 kb on + strand, within Xcc-8004.4736.1at 4506.464 kb on + strand, within Xcc-8004.4736.1at 4506.464 kb on + strand, within Xcc-8004.4736.1at 4506.465 kb on - strand, within Xcc-8004.4736.1at 4506.465 kb on - strand, within Xcc-8004.4736.1at 4506.465 kb on - strand, within Xcc-8004.4736.1at 4506.465 kb on - strand, within Xcc-8004.4736.1at 4506.535 kb on + strand, within Xcc-8004.4736.1at 4506.535 kb on + strand, within Xcc-8004.4736.1at 4506.536 kb on - strand, within Xcc-8004.4736.1at 4506.575 kb on + strand, within Xcc-8004.4736.1at 4506.575 kb on + strand, within Xcc-8004.4736.1at 4506.575 kb on + strand, within Xcc-8004.4736.1at 4506.575 kb on + strand, within Xcc-8004.4736.1at 4506.576 kb on - strand, within Xcc-8004.4736.1at 4506.576 kb on - strand, within Xcc-8004.4736.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T1L3P4
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4,505,072 + +1.3
4,505,073 - -0.3
4,505,073 - +1.2
4,505,073 - -1.0
4,505,073 - -0.2
4,505,111 + +0.7
4,505,256 + Xcc-8004.4735.1 0.25 -1.0
4,505,256 + Xcc-8004.4735.1 0.25 -2.2
4,505,256 + Xcc-8004.4735.1 0.25 +1.0
4,505,256 + Xcc-8004.4735.1 0.25 +0.5
4,505,256 + Xcc-8004.4735.1 0.25 -1.4
4,505,257 - Xcc-8004.4735.1 0.25 +0.4
4,505,257 - Xcc-8004.4735.1 0.25 +0.3
4,505,257 - Xcc-8004.4735.1 0.25 +0.5
4,505,257 - Xcc-8004.4735.1 0.25 +1.3
4,505,257 - Xcc-8004.4735.1 0.25 -1.7
4,505,257 - Xcc-8004.4735.1 0.25 -1.3
4,505,257 - Xcc-8004.4735.1 0.25 +0.1
4,505,257 - Xcc-8004.4735.1 0.25 +0.2
4,505,260 + Xcc-8004.4735.1 0.26 -0.6
4,505,260 + Xcc-8004.4735.1 0.26 +0.2
4,505,261 - Xcc-8004.4735.1 0.26 -0.9
4,505,261 - Xcc-8004.4735.1 0.26 -1.8
4,505,261 - Xcc-8004.4735.1 0.26 +0.4
4,505,346 + Xcc-8004.4735.1 0.40 +0.3
4,505,347 - Xcc-8004.4735.1 0.41 -1.0
4,505,372 - Xcc-8004.4735.1 0.45 +1.5
4,505,576 + Xcc-8004.4735.1 0.80 -0.5
4,505,894 + Xcc-8004.4736.1 0.14 -2.7
4,505,895 - Xcc-8004.4736.1 0.14 +1.2
4,505,895 - Xcc-8004.4736.1 0.14 +0.1
4,505,895 - Xcc-8004.4736.1 0.14 +1.6
4,505,903 + Xcc-8004.4736.1 0.14 +0.1
4,505,903 + Xcc-8004.4736.1 0.14 +0.7
4,505,903 + Xcc-8004.4736.1 0.14 -0.2
4,505,903 + Xcc-8004.4736.1 0.14 -1.4
4,505,903 + Xcc-8004.4736.1 0.14 +0.1
4,505,903 + Xcc-8004.4736.1 0.14 -0.0
4,505,903 + Xcc-8004.4736.1 0.14 -1.0
4,505,903 + Xcc-8004.4736.1 0.14 -0.6
4,505,903 + Xcc-8004.4736.1 0.14 -0.4
4,505,903 + Xcc-8004.4736.1 0.14 -1.6
4,505,904 - Xcc-8004.4736.1 0.14 -0.4
4,505,904 - Xcc-8004.4736.1 0.14 -0.3
4,505,904 - Xcc-8004.4736.1 0.14 +0.2
4,505,904 - Xcc-8004.4736.1 0.14 +1.6
4,506,096 + Xcc-8004.4736.1 0.27 -0.9
4,506,284 + Xcc-8004.4736.1 0.40 +0.4
4,506,284 + Xcc-8004.4736.1 0.40 -1.2
4,506,284 + Xcc-8004.4736.1 0.40 +0.2
4,506,284 + Xcc-8004.4736.1 0.40 +0.9
4,506,284 + Xcc-8004.4736.1 0.40 +0.7
4,506,285 - Xcc-8004.4736.1 0.40 -0.4
4,506,285 - Xcc-8004.4736.1 0.40 +0.0
4,506,285 - Xcc-8004.4736.1 0.40 +1.3
4,506,344 + Xcc-8004.4736.1 0.44 -0.4
4,506,350 + Xcc-8004.4736.1 0.44 +0.8
4,506,350 + Xcc-8004.4736.1 0.44 -0.2
4,506,350 + Xcc-8004.4736.1 0.44 -0.3
4,506,350 + Xcc-8004.4736.1 0.44 +1.1
4,506,350 + Xcc-8004.4736.1 0.44 +1.2
4,506,350 + Xcc-8004.4736.1 0.44 -0.6
4,506,350 + Xcc-8004.4736.1 0.44 -0.3
4,506,350 + Xcc-8004.4736.1 0.44 -2.0
4,506,351 - Xcc-8004.4736.1 0.44 -0.1
4,506,351 - Xcc-8004.4736.1 0.44 +0.7
4,506,351 - Xcc-8004.4736.1 0.44 +0.3
4,506,351 - Xcc-8004.4736.1 0.44 -0.7
4,506,351 - Xcc-8004.4736.1 0.44 +0.4
4,506,351 - Xcc-8004.4736.1 0.44 -0.4
4,506,464 + Xcc-8004.4736.1 0.52 -0.6
4,506,464 + Xcc-8004.4736.1 0.52 -0.0
4,506,464 + Xcc-8004.4736.1 0.52 +1.4
4,506,464 + Xcc-8004.4736.1 0.52 +0.4
4,506,464 + Xcc-8004.4736.1 0.52 +0.7
4,506,465 - Xcc-8004.4736.1 0.52 +0.9
4,506,465 - Xcc-8004.4736.1 0.52 +1.3
4,506,465 - Xcc-8004.4736.1 0.52 +0.5
4,506,465 - Xcc-8004.4736.1 0.52 +1.6
4,506,535 + Xcc-8004.4736.1 0.56 -1.0
4,506,535 + Xcc-8004.4736.1 0.56 +0.9
4,506,536 - Xcc-8004.4736.1 0.56 +2.2
4,506,575 + Xcc-8004.4736.1 0.59 -0.1
4,506,575 + Xcc-8004.4736.1 0.59 +1.0
4,506,575 + Xcc-8004.4736.1 0.59 -2.5
4,506,575 + Xcc-8004.4736.1 0.59 -0.8
4,506,576 - Xcc-8004.4736.1 0.59 +1.0
4,506,576 - Xcc-8004.4736.1 0.59 -0.6

Or see this region's nucleotide sequence