Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4602.1

Experiment: Xylemvessel barcodes T1L3P4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.4601.1 and Xcc-8004.4602.1 are separated by 201 nucleotidesXcc-8004.4602.1 and Xcc-8004.4603.1 overlap by 4 nucleotides Xcc-8004.4601.1: Xcc-8004.4601.1 - Methionine ABC transporter substrate-binding protein, at 4,385,682 to 4,386,482 Xcc-8004.4601.1 Xcc-8004.4602.1: Xcc-8004.4602.1 - Methionine ABC transporter permease protein, at 4,386,684 to 4,387,382 Xcc-8004.4602.1 Xcc-8004.4603.1: Xcc-8004.4603.1 - Methionine ABC transporter ATP-binding protein, at 4,387,379 to 4,388,386 Xcc-8004.4603.1 Position (kb) 4386 4387 4388Strain fitness (log2 ratio) -2 -1 0 1 2at 4385.684 kb on - strandat 4385.684 kb on - strandat 4385.684 kb on - strandat 4385.710 kb on + strandat 4385.711 kb on - strandat 4385.711 kb on - strandat 4385.818 kb on + strand, within Xcc-8004.4601.1at 4385.819 kb on - strand, within Xcc-8004.4601.1at 4385.819 kb on - strand, within Xcc-8004.4601.1at 4385.884 kb on + strand, within Xcc-8004.4601.1at 4385.884 kb on + strand, within Xcc-8004.4601.1at 4385.884 kb on + strand, within Xcc-8004.4601.1at 4385.884 kb on + strand, within Xcc-8004.4601.1at 4385.884 kb on + strand, within Xcc-8004.4601.1at 4385.885 kb on - strand, within Xcc-8004.4601.1at 4385.885 kb on - strand, within Xcc-8004.4601.1at 4386.143 kb on - strand, within Xcc-8004.4601.1at 4386.208 kb on + strand, within Xcc-8004.4601.1at 4386.208 kb on + strand, within Xcc-8004.4601.1at 4386.238 kb on + strand, within Xcc-8004.4601.1at 4386.238 kb on + strand, within Xcc-8004.4601.1at 4386.239 kb on - strand, within Xcc-8004.4601.1at 4386.239 kb on - strand, within Xcc-8004.4601.1at 4386.286 kb on + strand, within Xcc-8004.4601.1at 4386.286 kb on + strand, within Xcc-8004.4601.1at 4386.286 kb on + strand, within Xcc-8004.4601.1at 4386.286 kb on + strand, within Xcc-8004.4601.1at 4386.287 kb on - strand, within Xcc-8004.4601.1at 4386.287 kb on - strand, within Xcc-8004.4601.1at 4386.287 kb on - strand, within Xcc-8004.4601.1at 4386.287 kb on - strand, within Xcc-8004.4601.1at 4386.287 kb on - strand, within Xcc-8004.4601.1at 4386.287 kb on - strand, within Xcc-8004.4601.1at 4386.287 kb on - strand, within Xcc-8004.4601.1at 4386.287 kb on - strand, within Xcc-8004.4601.1at 4386.287 kb on - strand, within Xcc-8004.4601.1at 4386.484 kb on + strandat 4386.484 kb on + strandat 4386.484 kb on + strandat 4386.485 kb on - strandat 4386.485 kb on - strandat 4386.485 kb on - strandat 4386.485 kb on - strandat 4386.485 kb on - strandat 4386.485 kb on - strandat 4386.535 kb on + strandat 4386.535 kb on + strandat 4386.535 kb on + strandat 4386.535 kb on + strandat 4386.536 kb on - strandat 4386.536 kb on - strandat 4386.536 kb on - strandat 4386.680 kb on + strandat 4386.680 kb on + strandat 4386.680 kb on + strandat 4386.680 kb on + strandat 4386.680 kb on + strandat 4386.680 kb on + strandat 4386.680 kb on + strandat 4386.680 kb on + strandat 4386.681 kb on - strandat 4386.681 kb on - strandat 4386.681 kb on - strandat 4386.681 kb on - strandat 4386.697 kb on + strandat 4386.796 kb on + strand, within Xcc-8004.4602.1at 4386.797 kb on - strand, within Xcc-8004.4602.1at 4387.027 kb on + strand, within Xcc-8004.4602.1at 4387.027 kb on + strand, within Xcc-8004.4602.1at 4387.027 kb on + strand, within Xcc-8004.4602.1at 4387.028 kb on - strand, within Xcc-8004.4602.1at 4387.028 kb on - strand, within Xcc-8004.4602.1at 4387.181 kb on - strand, within Xcc-8004.4602.1at 4387.181 kb on - strand, within Xcc-8004.4602.1at 4387.181 kb on - strand, within Xcc-8004.4602.1at 4387.382 kb on + strandat 4387.382 kb on + strandat 4387.382 kb on + strandat 4387.382 kb on + strandat 4387.382 kb on + strandat 4387.521 kb on + strand, within Xcc-8004.4603.1at 4387.521 kb on + strand, within Xcc-8004.4603.1at 4387.521 kb on + strand, within Xcc-8004.4603.1at 4387.521 kb on + strand, within Xcc-8004.4603.1at 4387.521 kb on + strand, within Xcc-8004.4603.1at 4387.521 kb on + strand, within Xcc-8004.4603.1at 4387.521 kb on + strand, within Xcc-8004.4603.1at 4387.522 kb on - strand, within Xcc-8004.4603.1at 4387.522 kb on - strand, within Xcc-8004.4603.1at 4387.522 kb on - strand, within Xcc-8004.4603.1at 4387.522 kb on - strand, within Xcc-8004.4603.1at 4387.522 kb on - strand, within Xcc-8004.4603.1at 4387.566 kb on + strand, within Xcc-8004.4603.1at 4387.566 kb on + strand, within Xcc-8004.4603.1at 4387.566 kb on + strand, within Xcc-8004.4603.1at 4387.566 kb on + strand, within Xcc-8004.4603.1at 4387.566 kb on + strand, within Xcc-8004.4603.1at 4387.566 kb on + strand, within Xcc-8004.4603.1at 4387.566 kb on + strand, within Xcc-8004.4603.1at 4387.566 kb on + strand, within Xcc-8004.4603.1at 4387.567 kb on - strand, within Xcc-8004.4603.1at 4387.567 kb on - strand, within Xcc-8004.4603.1at 4387.567 kb on - strand, within Xcc-8004.4603.1at 4387.936 kb on + strand, within Xcc-8004.4603.1at 4387.937 kb on - strand, within Xcc-8004.4603.1at 4387.978 kb on - strand, within Xcc-8004.4603.1at 4387.978 kb on - strand, within Xcc-8004.4603.1at 4388.355 kb on + strandat 4388.356 kb on - strandat 4388.356 kb on - strandat 4388.356 kb on - strandat 4388.356 kb on - strandat 4388.356 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T1L3P4
remove
4,385,684 - +1.9
4,385,684 - -1.1
4,385,684 - +0.5
4,385,710 + +0.6
4,385,711 - -1.1
4,385,711 - +0.3
4,385,818 + Xcc-8004.4601.1 0.17 -1.3
4,385,819 - Xcc-8004.4601.1 0.17 -2.1
4,385,819 - Xcc-8004.4601.1 0.17 +0.5
4,385,884 + Xcc-8004.4601.1 0.25 -0.6
4,385,884 + Xcc-8004.4601.1 0.25 +1.2
4,385,884 + Xcc-8004.4601.1 0.25 +0.5
4,385,884 + Xcc-8004.4601.1 0.25 -1.4
4,385,884 + Xcc-8004.4601.1 0.25 +1.3
4,385,885 - Xcc-8004.4601.1 0.25 +0.6
4,385,885 - Xcc-8004.4601.1 0.25 +1.1
4,386,143 - Xcc-8004.4601.1 0.58 -0.6
4,386,208 + Xcc-8004.4601.1 0.66 -0.5
4,386,208 + Xcc-8004.4601.1 0.66 -0.1
4,386,238 + Xcc-8004.4601.1 0.69 +0.1
4,386,238 + Xcc-8004.4601.1 0.69 -1.0
4,386,239 - Xcc-8004.4601.1 0.70 +0.7
4,386,239 - Xcc-8004.4601.1 0.70 +0.5
4,386,286 + Xcc-8004.4601.1 0.75 -0.1
4,386,286 + Xcc-8004.4601.1 0.75 -0.3
4,386,286 + Xcc-8004.4601.1 0.75 +0.0
4,386,286 + Xcc-8004.4601.1 0.75 +1.4
4,386,287 - Xcc-8004.4601.1 0.76 +1.1
4,386,287 - Xcc-8004.4601.1 0.76 -0.3
4,386,287 - Xcc-8004.4601.1 0.76 +0.8
4,386,287 - Xcc-8004.4601.1 0.76 -0.6
4,386,287 - Xcc-8004.4601.1 0.76 +0.3
4,386,287 - Xcc-8004.4601.1 0.76 -0.3
4,386,287 - Xcc-8004.4601.1 0.76 -1.1
4,386,287 - Xcc-8004.4601.1 0.76 -2.6
4,386,287 - Xcc-8004.4601.1 0.76 +1.9
4,386,484 + +1.4
4,386,484 + +2.1
4,386,484 + +0.3
4,386,485 - -0.0
4,386,485 - -0.1
4,386,485 - +1.1
4,386,485 - -1.1
4,386,485 - +0.9
4,386,485 - -0.6
4,386,535 + -0.3
4,386,535 + -1.3
4,386,535 + +1.6
4,386,535 + +1.2
4,386,536 - -0.2
4,386,536 - -0.8
4,386,536 - -0.4
4,386,680 + +1.4
4,386,680 + -0.5
4,386,680 + +1.2
4,386,680 + -0.8
4,386,680 + +2.1
4,386,680 + +1.9
4,386,680 + -1.9
4,386,680 + -1.0
4,386,681 - -1.8
4,386,681 - -0.7
4,386,681 - -0.5
4,386,681 - -0.9
4,386,697 + +0.4
4,386,796 + Xcc-8004.4602.1 0.16 -1.1
4,386,797 - Xcc-8004.4602.1 0.16 -0.8
4,387,027 + Xcc-8004.4602.1 0.49 +0.9
4,387,027 + Xcc-8004.4602.1 0.49 -0.9
4,387,027 + Xcc-8004.4602.1 0.49 +0.8
4,387,028 - Xcc-8004.4602.1 0.49 +0.9
4,387,028 - Xcc-8004.4602.1 0.49 -1.3
4,387,181 - Xcc-8004.4602.1 0.71 -0.6
4,387,181 - Xcc-8004.4602.1 0.71 -1.8
4,387,181 - Xcc-8004.4602.1 0.71 -0.4
4,387,382 + -0.5
4,387,382 + -1.2
4,387,382 + +0.1
4,387,382 + -2.4
4,387,382 + +1.1
4,387,521 + Xcc-8004.4603.1 0.14 -1.6
4,387,521 + Xcc-8004.4603.1 0.14 -0.1
4,387,521 + Xcc-8004.4603.1 0.14 -0.4
4,387,521 + Xcc-8004.4603.1 0.14 +0.0
4,387,521 + Xcc-8004.4603.1 0.14 -1.5
4,387,521 + Xcc-8004.4603.1 0.14 +0.5
4,387,521 + Xcc-8004.4603.1 0.14 -2.6
4,387,522 - Xcc-8004.4603.1 0.14 +0.3
4,387,522 - Xcc-8004.4603.1 0.14 -0.8
4,387,522 - Xcc-8004.4603.1 0.14 +0.7
4,387,522 - Xcc-8004.4603.1 0.14 +0.1
4,387,522 - Xcc-8004.4603.1 0.14 -0.8
4,387,566 + Xcc-8004.4603.1 0.19 +2.3
4,387,566 + Xcc-8004.4603.1 0.19 -2.0
4,387,566 + Xcc-8004.4603.1 0.19 -1.1
4,387,566 + Xcc-8004.4603.1 0.19 -0.0
4,387,566 + Xcc-8004.4603.1 0.19 +0.1
4,387,566 + Xcc-8004.4603.1 0.19 +0.3
4,387,566 + Xcc-8004.4603.1 0.19 +0.4
4,387,566 + Xcc-8004.4603.1 0.19 +0.7
4,387,567 - Xcc-8004.4603.1 0.19 -0.8
4,387,567 - Xcc-8004.4603.1 0.19 +1.0
4,387,567 - Xcc-8004.4603.1 0.19 +0.5
4,387,936 + Xcc-8004.4603.1 0.55 +1.2
4,387,937 - Xcc-8004.4603.1 0.55 -0.9
4,387,978 - Xcc-8004.4603.1 0.59 +0.4
4,387,978 - Xcc-8004.4603.1 0.59 -2.2
4,388,355 + -0.4
4,388,356 - -0.9
4,388,356 - +1.3
4,388,356 - +1.9
4,388,356 - +0.8
4,388,356 - -1.1

Or see this region's nucleotide sequence