Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3982.1

Experiment: Xylemvessel barcodes T1L3P4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3981.1 and Xcc-8004.3982.1 are separated by 97 nucleotidesXcc-8004.3982.1 and Xcc-8004.3983.1 are separated by 96 nucleotidesXcc-8004.3983.1 and Xcc-8004.3984.1 are separated by 207 nucleotides Xcc-8004.3981.1: Xcc-8004.3981.1 - Methylisocitrate lyase (EC 4.1.3.30), at 3,860,685 to 3,861,581 Xcc-8004.3981.1 Xcc-8004.3982.1: Xcc-8004.3982.1 - Propionate catabolism operon regulatory protein PrpR, at 3,861,679 to 3,863,328 Xcc-8004.3982.1 Xcc-8004.3983.1: Xcc-8004.3983.1 - FIG01212198: hypothetical protein, at 3,863,425 to 3,863,754 Xcc-8004.3983.1 Xcc-8004.3984.1: Xcc-8004.3984.1 - putative; ORF located using Glimmer/Genemark, at 3,863,962 to 3,864,396 Xcc-8004.3984.1 Position (kb) 3861 3862 3863 3864Strain fitness (log2 ratio) -2 -1 0 1 2at 3860.729 kb on - strandat 3860.729 kb on - strandat 3860.729 kb on - strandat 3860.737 kb on + strandat 3860.752 kb on + strandat 3860.753 kb on - strandat 3860.753 kb on - strandat 3860.821 kb on + strand, within Xcc-8004.3981.1at 3860.821 kb on + strand, within Xcc-8004.3981.1at 3860.986 kb on + strand, within Xcc-8004.3981.1at 3860.986 kb on + strand, within Xcc-8004.3981.1at 3860.987 kb on - strand, within Xcc-8004.3981.1at 3860.987 kb on - strand, within Xcc-8004.3981.1at 3861.001 kb on + strand, within Xcc-8004.3981.1at 3861.002 kb on - strand, within Xcc-8004.3981.1at 3861.020 kb on + strand, within Xcc-8004.3981.1at 3861.284 kb on + strand, within Xcc-8004.3981.1at 3861.445 kb on + strand, within Xcc-8004.3981.1at 3861.445 kb on + strand, within Xcc-8004.3981.1at 3861.445 kb on + strand, within Xcc-8004.3981.1at 3861.446 kb on - strand, within Xcc-8004.3981.1at 3861.446 kb on - strand, within Xcc-8004.3981.1at 3861.446 kb on - strand, within Xcc-8004.3981.1at 3861.446 kb on - strand, within Xcc-8004.3981.1at 3861.446 kb on - strand, within Xcc-8004.3981.1at 3861.446 kb on - strand, within Xcc-8004.3981.1at 3861.446 kb on - strand, within Xcc-8004.3981.1at 3861.634 kb on - strandat 3861.956 kb on - strand, within Xcc-8004.3982.1at 3861.956 kb on - strand, within Xcc-8004.3982.1at 3862.265 kb on - strand, within Xcc-8004.3982.1at 3862.343 kb on + strand, within Xcc-8004.3982.1at 3862.436 kb on - strand, within Xcc-8004.3982.1at 3862.597 kb on + strand, within Xcc-8004.3982.1at 3862.730 kb on + strand, within Xcc-8004.3982.1at 3862.861 kb on + strand, within Xcc-8004.3982.1at 3862.861 kb on + strand, within Xcc-8004.3982.1at 3862.862 kb on - strand, within Xcc-8004.3982.1at 3862.862 kb on - strand, within Xcc-8004.3982.1at 3862.928 kb on + strand, within Xcc-8004.3982.1at 3862.929 kb on - strand, within Xcc-8004.3982.1at 3862.939 kb on + strand, within Xcc-8004.3982.1at 3862.939 kb on + strand, within Xcc-8004.3982.1at 3863.033 kb on + strand, within Xcc-8004.3982.1at 3863.033 kb on + strand, within Xcc-8004.3982.1at 3863.033 kb on + strand, within Xcc-8004.3982.1at 3863.033 kb on + strand, within Xcc-8004.3982.1at 3863.033 kb on + strand, within Xcc-8004.3982.1at 3863.033 kb on + strand, within Xcc-8004.3982.1at 3863.033 kb on + strand, within Xcc-8004.3982.1at 3863.034 kb on - strand, within Xcc-8004.3982.1at 3863.034 kb on - strand, within Xcc-8004.3982.1at 3863.034 kb on - strand, within Xcc-8004.3982.1at 3863.034 kb on - strand, within Xcc-8004.3982.1at 3863.034 kb on - strand, within Xcc-8004.3982.1at 3863.034 kb on - strand, within Xcc-8004.3982.1at 3863.037 kb on + strand, within Xcc-8004.3982.1at 3863.037 kb on + strand, within Xcc-8004.3982.1at 3863.037 kb on + strand, within Xcc-8004.3982.1at 3863.038 kb on - strand, within Xcc-8004.3982.1at 3863.038 kb on - strand, within Xcc-8004.3982.1at 3863.153 kb on - strand, within Xcc-8004.3982.1at 3863.210 kb on + strandat 3863.210 kb on + strandat 3863.210 kb on + strandat 3863.210 kb on + strandat 3863.210 kb on + strandat 3863.211 kb on - strandat 3863.211 kb on - strandat 3863.211 kb on - strandat 3863.353 kb on + strandat 3863.353 kb on + strandat 3863.353 kb on + strandat 3863.353 kb on + strandat 3863.354 kb on - strandat 3863.356 kb on + strandat 3863.356 kb on + strandat 3863.356 kb on + strandat 3863.357 kb on - strandat 3863.362 kb on + strandat 3863.362 kb on + strandat 3863.363 kb on - strandat 3863.363 kb on - strandat 3863.426 kb on + strandat 3863.426 kb on + strandat 3863.426 kb on + strandat 3863.427 kb on - strandat 3863.427 kb on - strandat 3863.427 kb on - strandat 3863.427 kb on - strandat 3863.427 kb on - strandat 3863.427 kb on - strandat 3863.441 kb on + strandat 3863.442 kb on - strandat 3863.442 kb on - strandat 3863.489 kb on + strand, within Xcc-8004.3983.1at 3863.489 kb on + strand, within Xcc-8004.3983.1at 3863.489 kb on + strand, within Xcc-8004.3983.1at 3863.490 kb on - strand, within Xcc-8004.3983.1at 3863.490 kb on - strand, within Xcc-8004.3983.1at 3863.490 kb on - strand, within Xcc-8004.3983.1at 3863.549 kb on + strand, within Xcc-8004.3983.1at 3863.550 kb on - strand, within Xcc-8004.3983.1at 3863.550 kb on - strand, within Xcc-8004.3983.1at 3863.550 kb on - strand, within Xcc-8004.3983.1at 3863.815 kb on + strandat 3863.920 kb on - strandat 3863.920 kb on - strandat 3864.092 kb on + strand, within Xcc-8004.3984.1at 3864.092 kb on + strand, within Xcc-8004.3984.1at 3864.092 kb on + strand, within Xcc-8004.3984.1at 3864.092 kb on + strand, within Xcc-8004.3984.1at 3864.093 kb on - strand, within Xcc-8004.3984.1at 3864.093 kb on - strand, within Xcc-8004.3984.1at 3864.093 kb on - strand, within Xcc-8004.3984.1at 3864.134 kb on + strand, within Xcc-8004.3984.1at 3864.134 kb on + strand, within Xcc-8004.3984.1at 3864.134 kb on + strand, within Xcc-8004.3984.1at 3864.134 kb on + strand, within Xcc-8004.3984.1at 3864.134 kb on + strand, within Xcc-8004.3984.1at 3864.134 kb on + strand, within Xcc-8004.3984.1at 3864.134 kb on + strand, within Xcc-8004.3984.1at 3864.134 kb on + strand, within Xcc-8004.3984.1at 3864.135 kb on - strand, within Xcc-8004.3984.1at 3864.135 kb on - strand, within Xcc-8004.3984.1at 3864.135 kb on - strand, within Xcc-8004.3984.1at 3864.135 kb on - strand, within Xcc-8004.3984.1at 3864.135 kb on - strand, within Xcc-8004.3984.1at 3864.135 kb on - strand, within Xcc-8004.3984.1at 3864.135 kb on - strand, within Xcc-8004.3984.1at 3864.135 kb on - strand, within Xcc-8004.3984.1at 3864.135 kb on - strand, within Xcc-8004.3984.1at 3864.180 kb on + strand, within Xcc-8004.3984.1at 3864.206 kb on - strand, within Xcc-8004.3984.1at 3864.325 kb on + strand, within Xcc-8004.3984.1at 3864.326 kb on - strand, within Xcc-8004.3984.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T1L3P4
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3,860,729 - +0.7
3,860,729 - +0.6
3,860,729 - -1.3
3,860,737 + -1.0
3,860,752 + -1.8
3,860,753 - -0.8
3,860,753 - -1.7
3,860,821 + Xcc-8004.3981.1 0.15 +1.8
3,860,821 + Xcc-8004.3981.1 0.15 -0.4
3,860,986 + Xcc-8004.3981.1 0.34 -0.5
3,860,986 + Xcc-8004.3981.1 0.34 +0.2
3,860,987 - Xcc-8004.3981.1 0.34 +0.6
3,860,987 - Xcc-8004.3981.1 0.34 +0.1
3,861,001 + Xcc-8004.3981.1 0.35 +0.2
3,861,002 - Xcc-8004.3981.1 0.35 -1.5
3,861,020 + Xcc-8004.3981.1 0.37 -1.5
3,861,284 + Xcc-8004.3981.1 0.67 -0.6
3,861,445 + Xcc-8004.3981.1 0.85 -0.7
3,861,445 + Xcc-8004.3981.1 0.85 -1.7
3,861,445 + Xcc-8004.3981.1 0.85 -0.4
3,861,446 - Xcc-8004.3981.1 0.85 +0.2
3,861,446 - Xcc-8004.3981.1 0.85 -0.8
3,861,446 - Xcc-8004.3981.1 0.85 -0.6
3,861,446 - Xcc-8004.3981.1 0.85 -2.4
3,861,446 - Xcc-8004.3981.1 0.85 -1.3
3,861,446 - Xcc-8004.3981.1 0.85 -1.3
3,861,446 - Xcc-8004.3981.1 0.85 -1.7
3,861,634 - +1.1
3,861,956 - Xcc-8004.3982.1 0.17 -0.2
3,861,956 - Xcc-8004.3982.1 0.17 +0.4
3,862,265 - Xcc-8004.3982.1 0.36 -1.1
3,862,343 + Xcc-8004.3982.1 0.40 -0.1
3,862,436 - Xcc-8004.3982.1 0.46 +0.9
3,862,597 + Xcc-8004.3982.1 0.56 -0.4
3,862,730 + Xcc-8004.3982.1 0.64 -1.3
3,862,861 + Xcc-8004.3982.1 0.72 -1.3
3,862,861 + Xcc-8004.3982.1 0.72 +2.2
3,862,862 - Xcc-8004.3982.1 0.72 -0.1
3,862,862 - Xcc-8004.3982.1 0.72 -1.5
3,862,928 + Xcc-8004.3982.1 0.76 -0.4
3,862,929 - Xcc-8004.3982.1 0.76 -1.3
3,862,939 + Xcc-8004.3982.1 0.76 -2.0
3,862,939 + Xcc-8004.3982.1 0.76 -0.4
3,863,033 + Xcc-8004.3982.1 0.82 -1.3
3,863,033 + Xcc-8004.3982.1 0.82 -1.9
3,863,033 + Xcc-8004.3982.1 0.82 +0.3
3,863,033 + Xcc-8004.3982.1 0.82 +2.2
3,863,033 + Xcc-8004.3982.1 0.82 -0.6
3,863,033 + Xcc-8004.3982.1 0.82 -0.6
3,863,033 + Xcc-8004.3982.1 0.82 +0.4
3,863,034 - Xcc-8004.3982.1 0.82 -0.8
3,863,034 - Xcc-8004.3982.1 0.82 -2.0
3,863,034 - Xcc-8004.3982.1 0.82 -0.5
3,863,034 - Xcc-8004.3982.1 0.82 -0.4
3,863,034 - Xcc-8004.3982.1 0.82 -0.8
3,863,034 - Xcc-8004.3982.1 0.82 -1.2
3,863,037 + Xcc-8004.3982.1 0.82 +1.0
3,863,037 + Xcc-8004.3982.1 0.82 +2.2
3,863,037 + Xcc-8004.3982.1 0.82 +0.3
3,863,038 - Xcc-8004.3982.1 0.82 -0.3
3,863,038 - Xcc-8004.3982.1 0.82 +0.5
3,863,153 - Xcc-8004.3982.1 0.89 +0.8
3,863,210 + +1.6
3,863,210 + +1.4
3,863,210 + -0.1
3,863,210 + -1.7
3,863,210 + -1.1
3,863,211 - -1.1
3,863,211 - -1.8
3,863,211 - +0.2
3,863,353 + +0.7
3,863,353 + -0.5
3,863,353 + -0.7
3,863,353 + -0.2
3,863,354 - -0.5
3,863,356 + -0.1
3,863,356 + +1.8
3,863,356 + +0.2
3,863,357 - -0.0
3,863,362 + +1.0
3,863,362 + -1.1
3,863,363 - -0.6
3,863,363 - -1.8
3,863,426 + -1.3
3,863,426 + -0.8
3,863,426 + +1.0
3,863,427 - -0.9
3,863,427 - +1.9
3,863,427 - -0.5
3,863,427 - +0.5
3,863,427 - -2.3
3,863,427 - +0.2
3,863,441 + -0.1
3,863,442 - +0.0
3,863,442 - +1.8
3,863,489 + Xcc-8004.3983.1 0.19 +0.2
3,863,489 + Xcc-8004.3983.1 0.19 +0.3
3,863,489 + Xcc-8004.3983.1 0.19 -0.6
3,863,490 - Xcc-8004.3983.1 0.20 +0.0
3,863,490 - Xcc-8004.3983.1 0.20 -1.3
3,863,490 - Xcc-8004.3983.1 0.20 +0.9
3,863,549 + Xcc-8004.3983.1 0.38 +0.3
3,863,550 - Xcc-8004.3983.1 0.38 +0.2
3,863,550 - Xcc-8004.3983.1 0.38 -1.1
3,863,550 - Xcc-8004.3983.1 0.38 -1.6
3,863,815 + -1.0
3,863,920 - +0.2
3,863,920 - -0.0
3,864,092 + Xcc-8004.3984.1 0.30 -2.0
3,864,092 + Xcc-8004.3984.1 0.30 +0.3
3,864,092 + Xcc-8004.3984.1 0.30 -0.6
3,864,092 + Xcc-8004.3984.1 0.30 -0.5
3,864,093 - Xcc-8004.3984.1 0.30 +0.4
3,864,093 - Xcc-8004.3984.1 0.30 +0.6
3,864,093 - Xcc-8004.3984.1 0.30 -0.5
3,864,134 + Xcc-8004.3984.1 0.40 +0.5
3,864,134 + Xcc-8004.3984.1 0.40 -1.0
3,864,134 + Xcc-8004.3984.1 0.40 +0.5
3,864,134 + Xcc-8004.3984.1 0.40 +0.7
3,864,134 + Xcc-8004.3984.1 0.40 -0.5
3,864,134 + Xcc-8004.3984.1 0.40 +0.7
3,864,134 + Xcc-8004.3984.1 0.40 +0.6
3,864,134 + Xcc-8004.3984.1 0.40 +1.1
3,864,135 - Xcc-8004.3984.1 0.40 -1.5
3,864,135 - Xcc-8004.3984.1 0.40 -1.7
3,864,135 - Xcc-8004.3984.1 0.40 -0.4
3,864,135 - Xcc-8004.3984.1 0.40 -1.5
3,864,135 - Xcc-8004.3984.1 0.40 +1.7
3,864,135 - Xcc-8004.3984.1 0.40 -1.6
3,864,135 - Xcc-8004.3984.1 0.40 -0.6
3,864,135 - Xcc-8004.3984.1 0.40 +1.2
3,864,135 - Xcc-8004.3984.1 0.40 -0.3
3,864,180 + Xcc-8004.3984.1 0.50 -1.4
3,864,206 - Xcc-8004.3984.1 0.56 -0.8
3,864,325 + Xcc-8004.3984.1 0.83 +0.6
3,864,326 - Xcc-8004.3984.1 0.84 -0.8

Or see this region's nucleotide sequence