Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3124.1

Experiment: Xylemvessel barcodes T1L3P4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3123.1 and Xcc-8004.3124.1 are separated by 312 nucleotidesXcc-8004.3124.1 and Xcc-8004.3125.1 are separated by 61 nucleotidesXcc-8004.3125.1 and Xcc-8004.3126.1 are separated by 65 nucleotides Xcc-8004.3123.1: Xcc-8004.3123.1 - Dihydropteroate synthase (EC 2.5.1.15), at 3,049,632 to 3,050,534 Xcc-8004.3123.1 Xcc-8004.3124.1: Xcc-8004.3124.1 - Cell division protein FtsH (EC 3.4.24.-), at 3,050,847 to 3,052,787 Xcc-8004.3124.1 Xcc-8004.3125.1: Xcc-8004.3125.1 - Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-), at 3,052,849 to 3,053,481 Xcc-8004.3125.1 Xcc-8004.3126.1: Xcc-8004.3126.1 - FIG004454: RNA binding protein, at 3,053,547 to 3,053,852 Xcc-8004.3126.1 Position (kb) 3050 3051 3052 3053Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3050.667 kb on + strandat 3050.667 kb on + strandat 3050.668 kb on - strandat 3050.849 kb on - strandat 3050.895 kb on - strandat 3052.811 kb on - strandat 3052.811 kb on - strandat 3052.811 kb on - strandat 3052.811 kb on - strandat 3052.811 kb on - strandat 3052.819 kb on - strandat 3052.819 kb on - strandat 3052.819 kb on - strandat 3052.842 kb on - strandat 3052.851 kb on - strandat 3052.851 kb on - strandat 3052.851 kb on - strandat 3052.851 kb on - strandat 3052.851 kb on - strandat 3052.851 kb on - strandat 3052.851 kb on - strandat 3052.851 kb on - strandat 3052.851 kb on - strandat 3052.851 kb on - strandat 3052.851 kb on - strandat 3052.851 kb on - strandat 3052.851 kb on - strandat 3052.851 kb on - strandat 3053.512 kb on + strandat 3053.512 kb on + strandat 3053.560 kb on + strandat 3053.560 kb on + strandat 3053.560 kb on + strandat 3053.560 kb on + strandat 3053.561 kb on - strandat 3053.561 kb on - strandat 3053.561 kb on - strandat 3053.561 kb on - strandat 3053.561 kb on - strandat 3053.561 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T1L3P4
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3,050,667 + -0.4
3,050,667 + -1.2
3,050,668 - +1.7
3,050,849 - -1.6
3,050,895 - +0.7
3,052,811 - +1.0
3,052,811 - +1.7
3,052,811 - -0.7
3,052,811 - -2.2
3,052,811 - -1.2
3,052,819 - +0.8
3,052,819 - -0.6
3,052,819 - +0.4
3,052,842 - +0.1
3,052,851 - -1.1
3,052,851 - +0.2
3,052,851 - +1.6
3,052,851 - +0.9
3,052,851 - -0.3
3,052,851 - +3.0
3,052,851 - +1.0
3,052,851 - -1.1
3,052,851 - -0.4
3,052,851 - -0.4
3,052,851 - -0.6
3,052,851 - +0.7
3,052,851 - -0.0
3,052,851 - -1.1
3,053,512 + -0.9
3,053,512 + -0.6
3,053,560 + -0.4
3,053,560 + +0.8
3,053,560 + -0.2
3,053,560 + -1.2
3,053,561 - +0.3
3,053,561 - +0.2
3,053,561 - +0.9
3,053,561 - +1.4
3,053,561 - -2.9
3,053,561 - -1.8

Or see this region's nucleotide sequence