Experiment: Xylemvessel barcodes T1L3P4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3123.1 and Xcc-8004.3124.1 are separated by 312 nucleotides Xcc-8004.3124.1 and Xcc-8004.3125.1 are separated by 61 nucleotides Xcc-8004.3125.1 and Xcc-8004.3126.1 are separated by 65 nucleotides
Xcc-8004.3123.1: Xcc-8004.3123.1 - Dihydropteroate synthase (EC 2.5.1.15), at 3,049,632 to 3,050,534
Xcc-8004.3123.1
Xcc-8004.3124.1: Xcc-8004.3124.1 - Cell division protein FtsH (EC 3.4.24.-), at 3,050,847 to 3,052,787
Xcc-8004.3124.1
Xcc-8004.3125.1: Xcc-8004.3125.1 - Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-), at 3,052,849 to 3,053,481
Xcc-8004.3125.1
Xcc-8004.3126.1: Xcc-8004.3126.1 - FIG004454: RNA binding protein, at 3,053,547 to 3,053,852
Xcc-8004.3126.1
Position (kb)
3050
3051
3052
3053 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3050.667 kb on + strand at 3050.667 kb on + strand at 3050.668 kb on - strand at 3050.849 kb on - strand at 3050.895 kb on - strand at 3052.811 kb on - strand at 3052.811 kb on - strand at 3052.811 kb on - strand at 3052.811 kb on - strand at 3052.811 kb on - strand at 3052.819 kb on - strand at 3052.819 kb on - strand at 3052.819 kb on - strand at 3052.842 kb on - strand at 3052.851 kb on - strand at 3052.851 kb on - strand at 3052.851 kb on - strand at 3052.851 kb on - strand at 3052.851 kb on - strand at 3052.851 kb on - strand at 3052.851 kb on - strand at 3052.851 kb on - strand at 3052.851 kb on - strand at 3052.851 kb on - strand at 3052.851 kb on - strand at 3052.851 kb on - strand at 3052.851 kb on - strand at 3052.851 kb on - strand at 3053.512 kb on + strand at 3053.512 kb on + strand at 3053.560 kb on + strand at 3053.560 kb on + strand at 3053.560 kb on + strand at 3053.560 kb on + strand at 3053.561 kb on - strand at 3053.561 kb on - strand at 3053.561 kb on - strand at 3053.561 kb on - strand at 3053.561 kb on - strand at 3053.561 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T1L3P4 remove 3,050,667 + -0.4 3,050,667 + -1.2 3,050,668 - +1.7 3,050,849 - -1.6 3,050,895 - +0.7 3,052,811 - +1.0 3,052,811 - +1.7 3,052,811 - -0.7 3,052,811 - -2.2 3,052,811 - -1.2 3,052,819 - +0.8 3,052,819 - -0.6 3,052,819 - +0.4 3,052,842 - +0.1 3,052,851 - -1.1 3,052,851 - +0.2 3,052,851 - +1.6 3,052,851 - +0.9 3,052,851 - -0.3 3,052,851 - +3.0 3,052,851 - +1.0 3,052,851 - -1.1 3,052,851 - -0.4 3,052,851 - -0.4 3,052,851 - -0.6 3,052,851 - +0.7 3,052,851 - -0.0 3,052,851 - -1.1 3,053,512 + -0.9 3,053,512 + -0.6 3,053,560 + -0.4 3,053,560 + +0.8 3,053,560 + -0.2 3,053,560 + -1.2 3,053,561 - +0.3 3,053,561 - +0.2 3,053,561 - +0.9 3,053,561 - +1.4 3,053,561 - -2.9 3,053,561 - -1.8
Or see this region's nucleotide sequence