Experiment: Xylemvessel barcodes T1L3P4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.22.1 and Xcc-8004.24.1 are separated by 219 nucleotides Xcc-8004.24.1 and Xcc-8004.25.1 are separated by 40 nucleotides Xcc-8004.25.1 and Xcc-8004.26.1 are separated by 11 nucleotides
Xcc-8004.22.1: Xcc-8004.22.1 - Long-chain fatty acid transport protein, at 19,513 to 20,853
Xcc-8004.22.1
Xcc-8004.24.1: Xcc-8004.24.1 - FIG056164: rhomboid family serine protease, at 21,073 to 21,765
Xcc-8004.24.1
Xcc-8004.25.1: Xcc-8004.25.1 - FIG01211097: hypothetical protein, at 21,806 to 22,114
Xcc-8004.25.1
Xcc-8004.26.1: Xcc-8004.26.1 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 22,126 to 23,100
Xcc-8004.26.1
Position (kb) 21
22 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 20.114 kb on + strand, within Xcc-8004.22.1 at 20.114 kb on + strand, within Xcc-8004.22.1 at 20.204 kb on + strand, within Xcc-8004.22.1 at 20.204 kb on + strand, within Xcc-8004.22.1 at 20.204 kb on + strand, within Xcc-8004.22.1 at 20.205 kb on - strand, within Xcc-8004.22.1 at 20.330 kb on + strand, within Xcc-8004.22.1 at 20.330 kb on + strand, within Xcc-8004.22.1 at 20.330 kb on + strand, within Xcc-8004.22.1 at 20.330 kb on + strand, within Xcc-8004.22.1 at 20.331 kb on - strand, within Xcc-8004.22.1 at 20.345 kb on + strand, within Xcc-8004.22.1 at 20.346 kb on - strand, within Xcc-8004.22.1 at 20.346 kb on - strand, within Xcc-8004.22.1 at 20.423 kb on + strand, within Xcc-8004.22.1 at 20.424 kb on - strand, within Xcc-8004.22.1 at 20.424 kb on - strand, within Xcc-8004.22.1 at 20.460 kb on + strand, within Xcc-8004.22.1 at 20.460 kb on + strand, within Xcc-8004.22.1 at 20.461 kb on - strand, within Xcc-8004.22.1 at 20.461 kb on - strand, within Xcc-8004.22.1 at 20.504 kb on + strand, within Xcc-8004.22.1 at 20.504 kb on + strand, within Xcc-8004.22.1 at 20.504 kb on + strand, within Xcc-8004.22.1 at 20.504 kb on + strand, within Xcc-8004.22.1 at 20.504 kb on + strand, within Xcc-8004.22.1 at 20.504 kb on + strand, within Xcc-8004.22.1 at 20.504 kb on + strand, within Xcc-8004.22.1 at 20.505 kb on - strand, within Xcc-8004.22.1 at 20.505 kb on - strand, within Xcc-8004.22.1 at 20.505 kb on - strand, within Xcc-8004.22.1 at 20.576 kb on + strand, within Xcc-8004.22.1 at 20.576 kb on + strand, within Xcc-8004.22.1 at 20.576 kb on + strand, within Xcc-8004.22.1 at 20.577 kb on - strand, within Xcc-8004.22.1 at 20.577 kb on - strand, within Xcc-8004.22.1 at 20.597 kb on + strand, within Xcc-8004.22.1 at 20.597 kb on + strand, within Xcc-8004.22.1 at 20.597 kb on + strand, within Xcc-8004.22.1 at 20.598 kb on - strand, within Xcc-8004.22.1 at 20.598 kb on - strand, within Xcc-8004.22.1 at 20.805 kb on + strand at 20.806 kb on - strand at 20.806 kb on - strand at 20.806 kb on - strand at 20.806 kb on - strand at 20.806 kb on - strand at 20.806 kb on - strand at 20.847 kb on + strand at 20.848 kb on - strand at 20.848 kb on - strand at 20.848 kb on - strand at 20.848 kb on - strand at 20.874 kb on - strand at 20.874 kb on - strand at 20.874 kb on - strand at 20.892 kb on + strand at 20.893 kb on - strand at 20.893 kb on - strand at 20.893 kb on - strand at 20.893 kb on - strand at 20.893 kb on - strand at 20.893 kb on - strand at 20.954 kb on + strand at 20.954 kb on + strand at 20.954 kb on + strand at 20.955 kb on - strand at 20.964 kb on + strand at 20.964 kb on + strand at 20.971 kb on + strand at 20.971 kb on + strand at 20.971 kb on + strand at 20.971 kb on + strand at 20.971 kb on + strand at 20.971 kb on + strand at 20.971 kb on + strand at 20.971 kb on + strand at 20.971 kb on + strand at 20.971 kb on + strand at 20.971 kb on + strand at 20.972 kb on - strand at 20.972 kb on - strand at 20.972 kb on - strand at 20.972 kb on - strand at 20.972 kb on - strand at 20.973 kb on + strand at 20.974 kb on - strand at 20.974 kb on - strand at 21.013 kb on - strand at 21.059 kb on - strand at 21.059 kb on - strand at 21.154 kb on + strand, within Xcc-8004.24.1 at 21.154 kb on + strand, within Xcc-8004.24.1 at 21.154 kb on + strand, within Xcc-8004.24.1 at 21.154 kb on + strand, within Xcc-8004.24.1 at 21.154 kb on + strand, within Xcc-8004.24.1 at 21.154 kb on + strand, within Xcc-8004.24.1 at 21.154 kb on + strand, within Xcc-8004.24.1 at 21.154 kb on + strand, within Xcc-8004.24.1 at 21.155 kb on - strand, within Xcc-8004.24.1 at 21.155 kb on - strand, within Xcc-8004.24.1 at 21.155 kb on - strand, within Xcc-8004.24.1 at 21.155 kb on - strand, within Xcc-8004.24.1 at 21.155 kb on - strand, within Xcc-8004.24.1 at 21.192 kb on + strand, within Xcc-8004.24.1 at 21.192 kb on + strand, within Xcc-8004.24.1 at 21.192 kb on + strand, within Xcc-8004.24.1 at 21.192 kb on + strand, within Xcc-8004.24.1 at 21.192 kb on + strand, within Xcc-8004.24.1 at 21.192 kb on + strand, within Xcc-8004.24.1 at 21.192 kb on + strand, within Xcc-8004.24.1 at 21.192 kb on + strand, within Xcc-8004.24.1 at 21.192 kb on + strand, within Xcc-8004.24.1 at 21.192 kb on + strand, within Xcc-8004.24.1 at 21.193 kb on - strand, within Xcc-8004.24.1 at 21.193 kb on - strand, within Xcc-8004.24.1 at 21.193 kb on - strand, within Xcc-8004.24.1 at 21.193 kb on - strand, within Xcc-8004.24.1 at 21.511 kb on + strand, within Xcc-8004.24.1 at 21.511 kb on + strand, within Xcc-8004.24.1 at 21.511 kb on + strand, within Xcc-8004.24.1 at 21.511 kb on + strand, within Xcc-8004.24.1 at 21.511 kb on + strand, within Xcc-8004.24.1 at 21.511 kb on + strand, within Xcc-8004.24.1 at 21.511 kb on + strand, within Xcc-8004.24.1 at 21.511 kb on + strand, within Xcc-8004.24.1 at 21.512 kb on - strand, within Xcc-8004.24.1 at 21.512 kb on - strand, within Xcc-8004.24.1 at 21.512 kb on - strand, within Xcc-8004.24.1 at 21.512 kb on - strand, within Xcc-8004.24.1 at 21.512 kb on - strand, within Xcc-8004.24.1 at 21.512 kb on - strand, within Xcc-8004.24.1 at 21.512 kb on - strand, within Xcc-8004.24.1 at 21.637 kb on + strand, within Xcc-8004.24.1 at 21.637 kb on + strand, within Xcc-8004.24.1 at 21.638 kb on - strand, within Xcc-8004.24.1 at 21.638 kb on - strand, within Xcc-8004.24.1 at 21.638 kb on - strand, within Xcc-8004.24.1 at 21.638 kb on - strand, within Xcc-8004.24.1 at 21.638 kb on - strand, within Xcc-8004.24.1 at 21.706 kb on + strand at 21.707 kb on - strand at 21.707 kb on - strand at 21.715 kb on + strand at 21.715 kb on + strand at 21.715 kb on + strand at 21.715 kb on + strand at 21.715 kb on + strand at 21.715 kb on + strand at 21.715 kb on + strand at 21.715 kb on + strand at 21.715 kb on + strand at 21.715 kb on + strand at 21.716 kb on - strand at 21.716 kb on - strand at 21.716 kb on - strand at 21.716 kb on - strand at 21.716 kb on - strand at 21.716 kb on - strand at 21.716 kb on - strand at 21.716 kb on - strand at 21.716 kb on - strand at 21.716 kb on - strand at 21.716 kb on - strand at 21.716 kb on - strand at 21.716 kb on - strand at 21.716 kb on - strand at 21.716 kb on - strand at 21.716 kb on - strand at 21.716 kb on - strand at 21.716 kb on - strand at 21.763 kb on + strand at 21.763 kb on + strand at 21.763 kb on + strand at 21.764 kb on - strand at 21.764 kb on - strand at 21.782 kb on + strand at 21.782 kb on + strand at 21.782 kb on + strand at 21.783 kb on - strand at 21.783 kb on - strand at 21.783 kb on - strand at 21.783 kb on - strand at 21.783 kb on - strand at 21.785 kb on - strand at 21.785 kb on - strand at 21.785 kb on - strand at 21.809 kb on + strand at 21.809 kb on + strand at 21.809 kb on + strand at 21.809 kb on + strand at 21.809 kb on + strand at 21.809 kb on + strand at 21.809 kb on + strand at 21.810 kb on - strand at 21.810 kb on - strand at 21.810 kb on - strand at 21.810 kb on - strand at 21.810 kb on - strand at 21.842 kb on + strand, within Xcc-8004.25.1 at 21.843 kb on - strand, within Xcc-8004.25.1 at 21.843 kb on - strand, within Xcc-8004.25.1 at 21.843 kb on - strand, within Xcc-8004.25.1 at 21.843 kb on - strand, within Xcc-8004.25.1 at 21.843 kb on - strand, within Xcc-8004.25.1 at 21.843 kb on - strand, within Xcc-8004.25.1 at 21.851 kb on + strand, within Xcc-8004.25.1 at 21.852 kb on - strand, within Xcc-8004.25.1 at 21.852 kb on - strand, within Xcc-8004.25.1 at 22.138 kb on + strand at 22.265 kb on + strand, within Xcc-8004.26.1 at 22.266 kb on - strand, within Xcc-8004.26.1 at 22.266 kb on - strand, within Xcc-8004.26.1 at 22.281 kb on + strand, within Xcc-8004.26.1 at 22.281 kb on + strand, within Xcc-8004.26.1 at 22.282 kb on - strand, within Xcc-8004.26.1 at 22.481 kb on - strand, within Xcc-8004.26.1 at 22.678 kb on + strand, within Xcc-8004.26.1 at 22.679 kb on - strand, within Xcc-8004.26.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T1L3P4 remove 20,114 + Xcc-8004.22.1 0.45 +0.2 20,114 + Xcc-8004.22.1 0.45 -0.4 20,204 + Xcc-8004.22.1 0.52 -0.0 20,204 + Xcc-8004.22.1 0.52 +0.1 20,204 + Xcc-8004.22.1 0.52 -1.4 20,205 - Xcc-8004.22.1 0.52 +1.5 20,330 + Xcc-8004.22.1 0.61 -1.6 20,330 + Xcc-8004.22.1 0.61 +0.6 20,330 + Xcc-8004.22.1 0.61 +0.7 20,330 + Xcc-8004.22.1 0.61 -0.3 20,331 - Xcc-8004.22.1 0.61 -1.5 20,345 + Xcc-8004.22.1 0.62 -0.9 20,346 - Xcc-8004.22.1 0.62 +0.3 20,346 - Xcc-8004.22.1 0.62 -0.2 20,423 + Xcc-8004.22.1 0.68 +0.1 20,424 - Xcc-8004.22.1 0.68 +0.8 20,424 - Xcc-8004.22.1 0.68 -1.8 20,460 + Xcc-8004.22.1 0.71 +0.6 20,460 + Xcc-8004.22.1 0.71 -2.4 20,461 - Xcc-8004.22.1 0.71 -1.7 20,461 - Xcc-8004.22.1 0.71 -0.6 20,504 + Xcc-8004.22.1 0.74 -0.4 20,504 + Xcc-8004.22.1 0.74 +1.4 20,504 + Xcc-8004.22.1 0.74 +0.8 20,504 + Xcc-8004.22.1 0.74 -0.1 20,504 + Xcc-8004.22.1 0.74 +0.3 20,504 + Xcc-8004.22.1 0.74 +0.5 20,504 + Xcc-8004.22.1 0.74 +0.8 20,505 - Xcc-8004.22.1 0.74 +0.6 20,505 - Xcc-8004.22.1 0.74 -1.7 20,505 - Xcc-8004.22.1 0.74 -0.5 20,576 + Xcc-8004.22.1 0.79 -0.0 20,576 + Xcc-8004.22.1 0.79 -0.1 20,576 + Xcc-8004.22.1 0.79 -1.4 20,577 - Xcc-8004.22.1 0.79 +0.4 20,577 - Xcc-8004.22.1 0.79 -0.0 20,597 + Xcc-8004.22.1 0.81 -1.9 20,597 + Xcc-8004.22.1 0.81 +0.1 20,597 + Xcc-8004.22.1 0.81 -1.2 20,598 - Xcc-8004.22.1 0.81 -0.1 20,598 - Xcc-8004.22.1 0.81 -0.0 20,805 + +0.3 20,806 - -0.5 20,806 - +0.7 20,806 - -1.2 20,806 - -1.6 20,806 - +0.2 20,806 - +2.0 20,847 + +0.5 20,848 - -0.6 20,848 - +0.6 20,848 - +0.6 20,848 - -1.1 20,874 - +0.7 20,874 - -0.1 20,874 - -1.0 20,892 + +0.8 20,893 - +0.7 20,893 - +0.3 20,893 - +0.2 20,893 - +0.2 20,893 - +0.1 20,893 - -3.7 20,954 + +0.6 20,954 + +0.6 20,954 + +1.0 20,955 - -0.7 20,964 + +2.0 20,964 + +0.0 20,971 + +0.8 20,971 + +0.4 20,971 + -0.9 20,971 + +0.5 20,971 + -0.3 20,971 + -0.1 20,971 + -0.2 20,971 + -0.9 20,971 + -0.0 20,971 + -0.5 20,971 + +0.1 20,972 - -0.7 20,972 - -3.1 20,972 - -1.4 20,972 - +1.1 20,972 - -1.2 20,973 + -0.4 20,974 - -2.0 20,974 - +0.1 21,013 - -0.0 21,059 - +0.5 21,059 - +0.7 21,154 + Xcc-8004.24.1 0.12 -1.3 21,154 + Xcc-8004.24.1 0.12 -1.2 21,154 + Xcc-8004.24.1 0.12 +0.4 21,154 + Xcc-8004.24.1 0.12 +0.5 21,154 + Xcc-8004.24.1 0.12 -1.4 21,154 + Xcc-8004.24.1 0.12 -0.6 21,154 + Xcc-8004.24.1 0.12 -0.0 21,154 + Xcc-8004.24.1 0.12 -1.5 21,155 - Xcc-8004.24.1 0.12 -3.6 21,155 - Xcc-8004.24.1 0.12 -1.5 21,155 - Xcc-8004.24.1 0.12 +0.1 21,155 - Xcc-8004.24.1 0.12 -1.3 21,155 - Xcc-8004.24.1 0.12 -0.9 21,192 + Xcc-8004.24.1 0.17 -0.0 21,192 + Xcc-8004.24.1 0.17 -1.7 21,192 + Xcc-8004.24.1 0.17 +1.1 21,192 + Xcc-8004.24.1 0.17 -0.6 21,192 + Xcc-8004.24.1 0.17 -0.6 21,192 + Xcc-8004.24.1 0.17 +0.5 21,192 + Xcc-8004.24.1 0.17 -1.3 21,192 + Xcc-8004.24.1 0.17 +0.8 21,192 + Xcc-8004.24.1 0.17 +0.3 21,192 + Xcc-8004.24.1 0.17 +0.4 21,193 - Xcc-8004.24.1 0.17 -1.5 21,193 - Xcc-8004.24.1 0.17 +0.4 21,193 - Xcc-8004.24.1 0.17 +0.3 21,193 - Xcc-8004.24.1 0.17 -0.4 21,511 + Xcc-8004.24.1 0.63 +0.1 21,511 + Xcc-8004.24.1 0.63 -0.7 21,511 + Xcc-8004.24.1 0.63 +1.0 21,511 + Xcc-8004.24.1 0.63 -2.2 21,511 + Xcc-8004.24.1 0.63 -0.5 21,511 + Xcc-8004.24.1 0.63 -1.4 21,511 + Xcc-8004.24.1 0.63 -1.4 21,511 + Xcc-8004.24.1 0.63 +1.5 21,512 - Xcc-8004.24.1 0.63 -1.6 21,512 - Xcc-8004.24.1 0.63 -0.6 21,512 - Xcc-8004.24.1 0.63 +0.7 21,512 - Xcc-8004.24.1 0.63 -0.2 21,512 - Xcc-8004.24.1 0.63 +0.6 21,512 - Xcc-8004.24.1 0.63 -1.0 21,512 - Xcc-8004.24.1 0.63 -1.7 21,637 + Xcc-8004.24.1 0.81 -2.4 21,637 + Xcc-8004.24.1 0.81 +0.1 21,638 - Xcc-8004.24.1 0.82 -1.9 21,638 - Xcc-8004.24.1 0.82 -1.4 21,638 - Xcc-8004.24.1 0.82 -1.4 21,638 - Xcc-8004.24.1 0.82 -0.8 21,638 - Xcc-8004.24.1 0.82 +0.4 21,706 + +1.0 21,707 - -3.0 21,707 - -0.9 21,715 + -0.9 21,715 + -1.0 21,715 + -1.2 21,715 + +1.0 21,715 + -1.4 21,715 + +0.3 21,715 + -0.4 21,715 + +0.4 21,715 + +0.4 21,715 + +0.4 21,716 - -1.4 21,716 - -1.5 21,716 - +2.2 21,716 - -1.4 21,716 - +2.4 21,716 - -1.7 21,716 - -0.6 21,716 - +1.0 21,716 - -0.4 21,716 - -0.9 21,716 - -0.5 21,716 - -0.6 21,716 - -1.2 21,716 - -1.9 21,716 - -0.2 21,716 - -1.7 21,716 - +1.7 21,716 - -0.5 21,763 + -0.1 21,763 + +0.9 21,763 + -0.6 21,764 - -0.0 21,764 - -0.2 21,782 + +0.7 21,782 + -0.5 21,782 + -1.1 21,783 - -0.6 21,783 - +1.5 21,783 - +1.2 21,783 - -1.1 21,783 - +0.5 21,785 - -1.2 21,785 - -0.3 21,785 - -2.1 21,809 + -2.7 21,809 + +0.0 21,809 + -3.4 21,809 + +0.3 21,809 + +1.0 21,809 + +0.9 21,809 + -0.7 21,810 - -0.4 21,810 - +1.1 21,810 - +0.5 21,810 - -1.8 21,810 - -2.9 21,842 + Xcc-8004.25.1 0.12 +0.1 21,843 - Xcc-8004.25.1 0.12 -0.1 21,843 - Xcc-8004.25.1 0.12 +0.6 21,843 - Xcc-8004.25.1 0.12 +0.4 21,843 - Xcc-8004.25.1 0.12 -0.7 21,843 - Xcc-8004.25.1 0.12 -2.1 21,843 - Xcc-8004.25.1 0.12 -0.7 21,851 + Xcc-8004.25.1 0.15 -2.4 21,852 - Xcc-8004.25.1 0.15 +1.4 21,852 - Xcc-8004.25.1 0.15 -0.0 22,138 + -0.3 22,265 + Xcc-8004.26.1 0.14 +0.2 22,266 - Xcc-8004.26.1 0.14 -0.1 22,266 - Xcc-8004.26.1 0.14 +0.8 22,281 + Xcc-8004.26.1 0.16 +0.3 22,281 + Xcc-8004.26.1 0.16 -1.8 22,282 - Xcc-8004.26.1 0.16 +0.6 22,481 - Xcc-8004.26.1 0.36 +0.3 22,678 + Xcc-8004.26.1 0.57 +0.3 22,679 - Xcc-8004.26.1 0.57 -1.6
Or see this region's nucleotide sequence