Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2291.1

Experiment: Xylemvessel barcodes T1L3P4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2289.1 and Xcc-8004.2290.1 are separated by 10 nucleotidesXcc-8004.2290.1 and Xcc-8004.2291.1 are separated by 28 nucleotidesXcc-8004.2291.1 and Xcc-8004.2292.1 are separated by 62 nucleotides Xcc-8004.2289.1: Xcc-8004.2289.1 - hypothetical protein, at 2,240,829 to 2,241,548 Xcc-8004.2289.1 Xcc-8004.2290.1: Xcc-8004.2290.1 - Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase, at 2,241,559 to 2,242,326 Xcc-8004.2290.1 Xcc-8004.2291.1: Xcc-8004.2291.1 - Pro-zeta-carotene desaturase, prolycopene producing (EC 1.-.-.-), at 2,242,355 to 2,243,044 Xcc-8004.2291.1 Xcc-8004.2292.1: Xcc-8004.2292.1 - Polygalacturonase (EC 3.2.1.15), at 2,243,107 to 2,244,825 Xcc-8004.2292.1 Position (kb) 2242 2243 2244Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2241.892 kb on + strand, within Xcc-8004.2290.1at 2241.892 kb on + strand, within Xcc-8004.2290.1at 2242.004 kb on - strand, within Xcc-8004.2290.1at 2242.004 kb on - strand, within Xcc-8004.2290.1at 2242.004 kb on - strand, within Xcc-8004.2290.1at 2242.004 kb on - strand, within Xcc-8004.2290.1at 2242.153 kb on + strand, within Xcc-8004.2290.1at 2242.153 kb on + strand, within Xcc-8004.2290.1at 2242.153 kb on + strand, within Xcc-8004.2290.1at 2242.153 kb on + strand, within Xcc-8004.2290.1at 2242.153 kb on + strand, within Xcc-8004.2290.1at 2242.154 kb on - strand, within Xcc-8004.2290.1at 2242.154 kb on - strand, within Xcc-8004.2290.1at 2242.154 kb on - strand, within Xcc-8004.2290.1at 2242.154 kb on - strand, within Xcc-8004.2290.1at 2242.154 kb on - strand, within Xcc-8004.2290.1at 2242.154 kb on - strand, within Xcc-8004.2290.1at 2242.985 kb on + strandat 2242.985 kb on + strandat 2243.108 kb on + strandat 2243.108 kb on + strandat 2243.108 kb on + strandat 2243.108 kb on + strandat 2243.108 kb on + strandat 2243.109 kb on - strandat 2243.109 kb on - strandat 2243.109 kb on - strandat 2243.138 kb on + strandat 2243.397 kb on - strand, within Xcc-8004.2292.1at 2243.397 kb on - strand, within Xcc-8004.2292.1at 2243.397 kb on - strand, within Xcc-8004.2292.1at 2243.504 kb on + strand, within Xcc-8004.2292.1at 2243.504 kb on + strand, within Xcc-8004.2292.1at 2243.505 kb on - strand, within Xcc-8004.2292.1at 2243.518 kb on + strand, within Xcc-8004.2292.1at 2243.571 kb on - strand, within Xcc-8004.2292.1at 2243.604 kb on + strand, within Xcc-8004.2292.1at 2243.735 kb on + strand, within Xcc-8004.2292.1at 2243.735 kb on + strand, within Xcc-8004.2292.1at 2243.736 kb on - strand, within Xcc-8004.2292.1at 2243.739 kb on - strand, within Xcc-8004.2292.1at 2243.835 kb on + strand, within Xcc-8004.2292.1at 2243.837 kb on + strand, within Xcc-8004.2292.1at 2243.838 kb on - strand, within Xcc-8004.2292.1at 2243.838 kb on - strand, within Xcc-8004.2292.1at 2243.838 kb on - strand, within Xcc-8004.2292.1at 2243.838 kb on - strand, within Xcc-8004.2292.1at 2244.026 kb on + strand, within Xcc-8004.2292.1at 2244.036 kb on + strand, within Xcc-8004.2292.1at 2244.037 kb on - strand, within Xcc-8004.2292.1at 2244.037 kb on - strand, within Xcc-8004.2292.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T1L3P4
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2,241,892 + Xcc-8004.2290.1 0.43 -2.2
2,241,892 + Xcc-8004.2290.1 0.43 -0.0
2,242,004 - Xcc-8004.2290.1 0.58 +0.3
2,242,004 - Xcc-8004.2290.1 0.58 +0.8
2,242,004 - Xcc-8004.2290.1 0.58 +0.8
2,242,004 - Xcc-8004.2290.1 0.58 -2.8
2,242,153 + Xcc-8004.2290.1 0.77 -0.6
2,242,153 + Xcc-8004.2290.1 0.77 +1.8
2,242,153 + Xcc-8004.2290.1 0.77 -1.5
2,242,153 + Xcc-8004.2290.1 0.77 +0.7
2,242,153 + Xcc-8004.2290.1 0.77 +0.7
2,242,154 - Xcc-8004.2290.1 0.77 -0.3
2,242,154 - Xcc-8004.2290.1 0.77 -0.1
2,242,154 - Xcc-8004.2290.1 0.77 +0.1
2,242,154 - Xcc-8004.2290.1 0.77 +0.5
2,242,154 - Xcc-8004.2290.1 0.77 -2.1
2,242,154 - Xcc-8004.2290.1 0.77 -1.8
2,242,985 + -1.1
2,242,985 + -0.9
2,243,108 + -0.9
2,243,108 + +0.9
2,243,108 + +0.5
2,243,108 + -0.4
2,243,108 + -0.5
2,243,109 - +0.1
2,243,109 - +0.4
2,243,109 - -0.2
2,243,138 + -1.0
2,243,397 - Xcc-8004.2292.1 0.17 -1.5
2,243,397 - Xcc-8004.2292.1 0.17 -0.4
2,243,397 - Xcc-8004.2292.1 0.17 +1.5
2,243,504 + Xcc-8004.2292.1 0.23 -2.0
2,243,504 + Xcc-8004.2292.1 0.23 +0.8
2,243,505 - Xcc-8004.2292.1 0.23 -0.9
2,243,518 + Xcc-8004.2292.1 0.24 +0.9
2,243,571 - Xcc-8004.2292.1 0.27 -0.9
2,243,604 + Xcc-8004.2292.1 0.29 -1.1
2,243,735 + Xcc-8004.2292.1 0.37 +0.4
2,243,735 + Xcc-8004.2292.1 0.37 +0.1
2,243,736 - Xcc-8004.2292.1 0.37 +0.3
2,243,739 - Xcc-8004.2292.1 0.37 -1.9
2,243,835 + Xcc-8004.2292.1 0.42 -0.8
2,243,837 + Xcc-8004.2292.1 0.42 +0.6
2,243,838 - Xcc-8004.2292.1 0.43 -1.8
2,243,838 - Xcc-8004.2292.1 0.43 -1.7
2,243,838 - Xcc-8004.2292.1 0.43 +2.1
2,243,838 - Xcc-8004.2292.1 0.43 +0.3
2,244,026 + Xcc-8004.2292.1 0.53 -1.5
2,244,036 + Xcc-8004.2292.1 0.54 +0.1
2,244,037 - Xcc-8004.2292.1 0.54 -0.4
2,244,037 - Xcc-8004.2292.1 0.54 -0.1

Or see this region's nucleotide sequence