Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1731.1

Experiment: Xylemvessel barcodes T1L3P4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1730.1 and Xcc-8004.1731.1 are separated by 153 nucleotidesXcc-8004.1731.1 and Xcc-8004.1732.1 are separated by 243 nucleotides Xcc-8004.1730.1: Xcc-8004.1730.1 - UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9), at 1,660,894 to 1,662,300 Xcc-8004.1730.1 Xcc-8004.1731.1: Xcc-8004.1731.1 - Dienelactone hydrolase family protein, at 1,662,454 to 1,663,254 Xcc-8004.1731.1 Xcc-8004.1732.1: Xcc-8004.1732.1 - hypothetical protein, at 1,663,498 to 1,664,496 Xcc-8004.1732.1 Position (kb) 1662 1663 1664Strain fitness (log2 ratio) -3 -2 -1 0 1at 1662.299 kb on - strandat 1662.592 kb on + strand, within Xcc-8004.1731.1at 1662.593 kb on - strand, within Xcc-8004.1731.1at 1662.700 kb on + strand, within Xcc-8004.1731.1at 1662.700 kb on + strand, within Xcc-8004.1731.1at 1662.701 kb on - strand, within Xcc-8004.1731.1at 1662.701 kb on - strand, within Xcc-8004.1731.1at 1662.704 kb on + strand, within Xcc-8004.1731.1at 1662.704 kb on + strand, within Xcc-8004.1731.1at 1662.704 kb on + strand, within Xcc-8004.1731.1at 1662.705 kb on - strand, within Xcc-8004.1731.1at 1662.705 kb on - strand, within Xcc-8004.1731.1at 1662.705 kb on - strand, within Xcc-8004.1731.1at 1662.725 kb on - strand, within Xcc-8004.1731.1at 1662.972 kb on + strand, within Xcc-8004.1731.1at 1663.183 kb on + strandat 1663.183 kb on + strandat 1663.183 kb on + strandat 1663.183 kb on + strandat 1663.184 kb on - strandat 1663.184 kb on - strandat 1663.248 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T1L3P4
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1,662,299 - +0.1
1,662,592 + Xcc-8004.1731.1 0.17 -0.8
1,662,593 - Xcc-8004.1731.1 0.17 -0.0
1,662,700 + Xcc-8004.1731.1 0.31 +0.2
1,662,700 + Xcc-8004.1731.1 0.31 -0.0
1,662,701 - Xcc-8004.1731.1 0.31 +0.4
1,662,701 - Xcc-8004.1731.1 0.31 -1.6
1,662,704 + Xcc-8004.1731.1 0.31 +0.4
1,662,704 + Xcc-8004.1731.1 0.31 -1.6
1,662,704 + Xcc-8004.1731.1 0.31 -0.4
1,662,705 - Xcc-8004.1731.1 0.31 +0.2
1,662,705 - Xcc-8004.1731.1 0.31 +1.2
1,662,705 - Xcc-8004.1731.1 0.31 -0.2
1,662,725 - Xcc-8004.1731.1 0.34 -1.1
1,662,972 + Xcc-8004.1731.1 0.65 -0.6
1,663,183 + -0.1
1,663,183 + -1.4
1,663,183 + -0.3
1,663,183 + -0.8
1,663,184 - +0.1
1,663,184 - -2.8
1,663,248 + +0.5

Or see this region's nucleotide sequence