Experiment: Xylemvessel barcodes T1L3P4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.143.1 and Xcc-8004.144.1 are separated by 12 nucleotides Xcc-8004.144.1 and Xcc-8004.145.1 are separated by 78 nucleotides Xcc-8004.145.1 and Xcc-8004.146.1 overlap by 4 nucleotides Xcc-8004.146.1 and Xcc-8004.148.1 are separated by 273 nucleotides
Xcc-8004.143.1: Xcc-8004.143.1 - hypothetical protein, at 132,161 to 132,337
Xcc-8004.143.1
Xcc-8004.144.1: Xcc-8004.144.1 - Putative protein-S-isoprenylcysteine methyltransferase, at 132,350 to 132,994
Xcc-8004.144.1
Xcc-8004.145.1: Xcc-8004.145.1 - two-component system sensor protein, at 133,073 to 134,302
Xcc-8004.145.1
Xcc-8004.146.1: Xcc-8004.146.1 - Two-component system regulatory protein, at 134,299 to 134,931
Xcc-8004.146.1
Xcc-8004.148.1: Xcc-8004.148.1 - hypothetical protein, at 135,205 to 136,578
Xcc-8004.148.1
Position (kb) 133
134
135 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 132.101 kb on + strand at 132.101 kb on + strand at 132.101 kb on + strand at 132.101 kb on + strand at 132.101 kb on + strand at 132.102 kb on - strand at 132.102 kb on - strand at 132.102 kb on - strand at 132.102 kb on - strand at 132.154 kb on + strand at 132.154 kb on + strand at 132.155 kb on - strand at 132.155 kb on - strand at 132.155 kb on - strand at 132.155 kb on - strand at 132.225 kb on - strand, within Xcc-8004.143.1 at 132.225 kb on - strand, within Xcc-8004.143.1 at 132.256 kb on + strand, within Xcc-8004.143.1 at 132.256 kb on + strand, within Xcc-8004.143.1 at 132.256 kb on + strand, within Xcc-8004.143.1 at 132.256 kb on + strand, within Xcc-8004.143.1 at 132.257 kb on - strand, within Xcc-8004.143.1 at 132.257 kb on - strand, within Xcc-8004.143.1 at 132.314 kb on - strand, within Xcc-8004.143.1 at 132.390 kb on + strand at 132.391 kb on - strand at 132.391 kb on - strand at 132.400 kb on - strand at 132.526 kb on - strand, within Xcc-8004.144.1 at 132.549 kb on + strand, within Xcc-8004.144.1 at 132.550 kb on - strand, within Xcc-8004.144.1 at 132.867 kb on + strand, within Xcc-8004.144.1 at 132.867 kb on + strand, within Xcc-8004.144.1 at 132.868 kb on - strand, within Xcc-8004.144.1 at 133.533 kb on + strand, within Xcc-8004.145.1 at 133.533 kb on + strand, within Xcc-8004.145.1 at 133.534 kb on - strand, within Xcc-8004.145.1 at 133.550 kb on + strand, within Xcc-8004.145.1 at 133.550 kb on + strand, within Xcc-8004.145.1 at 133.550 kb on + strand, within Xcc-8004.145.1 at 133.550 kb on + strand, within Xcc-8004.145.1 at 133.550 kb on + strand, within Xcc-8004.145.1 at 133.551 kb on - strand, within Xcc-8004.145.1 at 133.551 kb on - strand, within Xcc-8004.145.1 at 133.551 kb on - strand, within Xcc-8004.145.1 at 133.551 kb on - strand, within Xcc-8004.145.1 at 133.551 kb on - strand, within Xcc-8004.145.1 at 133.551 kb on - strand, within Xcc-8004.145.1 at 133.604 kb on + strand, within Xcc-8004.145.1 at 133.604 kb on + strand, within Xcc-8004.145.1 at 133.604 kb on + strand, within Xcc-8004.145.1 at 133.604 kb on + strand, within Xcc-8004.145.1 at 133.604 kb on + strand, within Xcc-8004.145.1 at 133.605 kb on - strand, within Xcc-8004.145.1 at 133.605 kb on - strand, within Xcc-8004.145.1 at 133.605 kb on - strand, within Xcc-8004.145.1 at 133.605 kb on - strand, within Xcc-8004.145.1 at 133.605 kb on - strand, within Xcc-8004.145.1 at 133.605 kb on - strand, within Xcc-8004.145.1 at 133.605 kb on - strand, within Xcc-8004.145.1 at 133.643 kb on + strand, within Xcc-8004.145.1 at 133.643 kb on + strand, within Xcc-8004.145.1 at 133.643 kb on + strand, within Xcc-8004.145.1 at 133.643 kb on + strand, within Xcc-8004.145.1 at 133.643 kb on + strand, within Xcc-8004.145.1 at 133.643 kb on + strand, within Xcc-8004.145.1 at 133.643 kb on + strand, within Xcc-8004.145.1 at 133.643 kb on + strand, within Xcc-8004.145.1 at 133.643 kb on + strand, within Xcc-8004.145.1 at 133.643 kb on + strand, within Xcc-8004.145.1 at 133.644 kb on - strand, within Xcc-8004.145.1 at 133.644 kb on - strand, within Xcc-8004.145.1 at 133.644 kb on - strand, within Xcc-8004.145.1 at 133.683 kb on - strand, within Xcc-8004.145.1 at 133.683 kb on - strand, within Xcc-8004.145.1 at 133.683 kb on - strand, within Xcc-8004.145.1 at 133.683 kb on - strand, within Xcc-8004.145.1 at 133.683 kb on - strand, within Xcc-8004.145.1 at 133.944 kb on + strand, within Xcc-8004.145.1 at 133.945 kb on - strand, within Xcc-8004.145.1 at 133.945 kb on - strand, within Xcc-8004.145.1 at 133.945 kb on - strand, within Xcc-8004.145.1 at 133.945 kb on - strand, within Xcc-8004.145.1 at 133.945 kb on - strand, within Xcc-8004.145.1 at 133.945 kb on - strand, within Xcc-8004.145.1 at 133.945 kb on - strand, within Xcc-8004.145.1 at 133.945 kb on - strand, within Xcc-8004.145.1 at 134.526 kb on + strand, within Xcc-8004.146.1 at 134.711 kb on - strand, within Xcc-8004.146.1 at 134.792 kb on - strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.848 kb on + strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.849 kb on - strand, within Xcc-8004.146.1 at 134.913 kb on + strand at 134.913 kb on + strand at 134.913 kb on + strand at 134.913 kb on + strand at 134.913 kb on + strand at 134.913 kb on + strand at 134.914 kb on - strand at 134.914 kb on - strand at 134.914 kb on - strand at 134.914 kb on - strand at 134.914 kb on - strand at 134.914 kb on - strand at 134.914 kb on - strand at 134.976 kb on - strand at 134.976 kb on - strand at 134.976 kb on - strand at 134.976 kb on - strand at 134.976 kb on - strand at 134.976 kb on - strand at 134.976 kb on - strand at 134.976 kb on - strand at 134.976 kb on - strand at 134.976 kb on - strand at 134.978 kb on - strand at 134.978 kb on - strand at 134.978 kb on - strand at 134.978 kb on - strand at 134.978 kb on - strand at 134.978 kb on - strand at 134.978 kb on - strand at 134.978 kb on - strand at 134.978 kb on - strand at 134.978 kb on - strand at 134.978 kb on - strand at 134.978 kb on - strand at 134.998 kb on - strand at 134.998 kb on - strand at 135.102 kb on + strand at 135.102 kb on + strand at 135.102 kb on + strand at 135.111 kb on + strand at 135.111 kb on + strand at 135.111 kb on + strand at 135.111 kb on + strand at 135.111 kb on + strand at 135.111 kb on + strand at 135.111 kb on + strand at 135.120 kb on + strand at 135.120 kb on + strand at 135.156 kb on - strand at 135.206 kb on + strand at 135.207 kb on - strand at 135.207 kb on - strand at 135.207 kb on - strand at 135.258 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T1L3P4 remove 132,101 + -0.9 132,101 + -2.1 132,101 + +0.5 132,101 + +0.8 132,101 + +0.3 132,102 - +1.2 132,102 - -0.4 132,102 - -0.0 132,102 - +0.4 132,154 + -1.4 132,154 + -0.6 132,155 - +0.4 132,155 - -0.2 132,155 - +1.5 132,155 - -0.3 132,225 - Xcc-8004.143.1 0.36 -0.2 132,225 - Xcc-8004.143.1 0.36 +0.3 132,256 + Xcc-8004.143.1 0.54 +1.9 132,256 + Xcc-8004.143.1 0.54 -2.6 132,256 + Xcc-8004.143.1 0.54 -0.6 132,256 + Xcc-8004.143.1 0.54 +1.4 132,257 - Xcc-8004.143.1 0.54 +0.4 132,257 - Xcc-8004.143.1 0.54 -1.0 132,314 - Xcc-8004.143.1 0.86 +0.5 132,390 + -0.6 132,391 - +0.7 132,391 - -0.5 132,400 - +0.1 132,526 - Xcc-8004.144.1 0.27 -2.1 132,549 + Xcc-8004.144.1 0.31 +0.2 132,550 - Xcc-8004.144.1 0.31 +0.8 132,867 + Xcc-8004.144.1 0.80 -0.4 132,867 + Xcc-8004.144.1 0.80 +0.6 132,868 - Xcc-8004.144.1 0.80 -1.5 133,533 + Xcc-8004.145.1 0.37 +0.8 133,533 + Xcc-8004.145.1 0.37 -0.9 133,534 - Xcc-8004.145.1 0.37 -0.3 133,550 + Xcc-8004.145.1 0.39 -0.0 133,550 + Xcc-8004.145.1 0.39 +1.7 133,550 + Xcc-8004.145.1 0.39 -0.7 133,550 + Xcc-8004.145.1 0.39 -0.9 133,550 + Xcc-8004.145.1 0.39 -3.1 133,551 - Xcc-8004.145.1 0.39 -0.6 133,551 - Xcc-8004.145.1 0.39 -0.1 133,551 - Xcc-8004.145.1 0.39 +0.7 133,551 - Xcc-8004.145.1 0.39 -0.4 133,551 - Xcc-8004.145.1 0.39 -0.7 133,551 - Xcc-8004.145.1 0.39 +0.4 133,604 + Xcc-8004.145.1 0.43 -2.4 133,604 + Xcc-8004.145.1 0.43 +1.0 133,604 + Xcc-8004.145.1 0.43 -0.7 133,604 + Xcc-8004.145.1 0.43 -0.6 133,604 + Xcc-8004.145.1 0.43 -0.5 133,605 - Xcc-8004.145.1 0.43 +0.2 133,605 - Xcc-8004.145.1 0.43 -0.0 133,605 - Xcc-8004.145.1 0.43 +2.1 133,605 - Xcc-8004.145.1 0.43 -0.9 133,605 - Xcc-8004.145.1 0.43 -1.1 133,605 - Xcc-8004.145.1 0.43 -0.4 133,605 - Xcc-8004.145.1 0.43 +0.3 133,643 + Xcc-8004.145.1 0.46 -1.4 133,643 + Xcc-8004.145.1 0.46 -1.2 133,643 + Xcc-8004.145.1 0.46 -0.4 133,643 + Xcc-8004.145.1 0.46 -0.3 133,643 + Xcc-8004.145.1 0.46 -0.4 133,643 + Xcc-8004.145.1 0.46 -1.7 133,643 + Xcc-8004.145.1 0.46 +1.6 133,643 + Xcc-8004.145.1 0.46 -0.5 133,643 + Xcc-8004.145.1 0.46 +0.3 133,643 + Xcc-8004.145.1 0.46 -0.4 133,644 - Xcc-8004.145.1 0.46 +0.3 133,644 - Xcc-8004.145.1 0.46 -0.4 133,644 - Xcc-8004.145.1 0.46 +0.4 133,683 - Xcc-8004.145.1 0.50 +0.1 133,683 - Xcc-8004.145.1 0.50 +0.2 133,683 - Xcc-8004.145.1 0.50 +0.1 133,683 - Xcc-8004.145.1 0.50 -1.7 133,683 - Xcc-8004.145.1 0.50 +0.4 133,944 + Xcc-8004.145.1 0.71 -1.7 133,945 - Xcc-8004.145.1 0.71 -0.7 133,945 - Xcc-8004.145.1 0.71 -0.5 133,945 - Xcc-8004.145.1 0.71 -0.3 133,945 - Xcc-8004.145.1 0.71 +0.3 133,945 - Xcc-8004.145.1 0.71 -0.5 133,945 - Xcc-8004.145.1 0.71 -1.0 133,945 - Xcc-8004.145.1 0.71 -0.2 133,945 - Xcc-8004.145.1 0.71 +0.3 134,526 + Xcc-8004.146.1 0.36 +0.8 134,711 - Xcc-8004.146.1 0.65 -1.7 134,792 - Xcc-8004.146.1 0.78 -0.6 134,848 + Xcc-8004.146.1 0.87 +1.1 134,848 + Xcc-8004.146.1 0.87 +1.4 134,848 + Xcc-8004.146.1 0.87 +0.6 134,848 + Xcc-8004.146.1 0.87 +0.1 134,848 + Xcc-8004.146.1 0.87 +0.6 134,848 + Xcc-8004.146.1 0.87 +0.3 134,848 + Xcc-8004.146.1 0.87 -0.5 134,848 + Xcc-8004.146.1 0.87 -0.7 134,848 + Xcc-8004.146.1 0.87 -1.2 134,848 + Xcc-8004.146.1 0.87 -0.1 134,848 + Xcc-8004.146.1 0.87 -2.3 134,848 + Xcc-8004.146.1 0.87 +0.8 134,848 + Xcc-8004.146.1 0.87 -0.2 134,848 + Xcc-8004.146.1 0.87 -1.0 134,848 + Xcc-8004.146.1 0.87 -1.8 134,848 + Xcc-8004.146.1 0.87 +0.3 134,848 + Xcc-8004.146.1 0.87 +0.7 134,848 + Xcc-8004.146.1 0.87 -0.9 134,848 + Xcc-8004.146.1 0.87 -1.2 134,848 + Xcc-8004.146.1 0.87 +0.2 134,848 + Xcc-8004.146.1 0.87 +1.3 134,849 - Xcc-8004.146.1 0.87 -0.6 134,849 - Xcc-8004.146.1 0.87 +0.0 134,849 - Xcc-8004.146.1 0.87 +0.4 134,849 - Xcc-8004.146.1 0.87 -1.2 134,849 - Xcc-8004.146.1 0.87 +0.3 134,849 - Xcc-8004.146.1 0.87 -0.6 134,849 - Xcc-8004.146.1 0.87 +2.7 134,849 - Xcc-8004.146.1 0.87 +0.7 134,849 - Xcc-8004.146.1 0.87 +0.5 134,849 - Xcc-8004.146.1 0.87 -3.4 134,849 - Xcc-8004.146.1 0.87 +0.3 134,849 - Xcc-8004.146.1 0.87 +2.2 134,849 - Xcc-8004.146.1 0.87 +0.7 134,849 - Xcc-8004.146.1 0.87 -0.9 134,849 - Xcc-8004.146.1 0.87 +0.4 134,849 - Xcc-8004.146.1 0.87 -0.9 134,849 - Xcc-8004.146.1 0.87 -0.5 134,849 - Xcc-8004.146.1 0.87 +2.0 134,849 - Xcc-8004.146.1 0.87 +0.7 134,849 - Xcc-8004.146.1 0.87 -0.3 134,849 - Xcc-8004.146.1 0.87 +1.0 134,849 - Xcc-8004.146.1 0.87 -0.2 134,849 - Xcc-8004.146.1 0.87 -1.0 134,849 - Xcc-8004.146.1 0.87 -1.1 134,849 - Xcc-8004.146.1 0.87 -0.3 134,849 - Xcc-8004.146.1 0.87 -0.0 134,849 - Xcc-8004.146.1 0.87 +1.6 134,849 - Xcc-8004.146.1 0.87 -1.7 134,849 - Xcc-8004.146.1 0.87 +1.0 134,849 - Xcc-8004.146.1 0.87 +0.6 134,849 - Xcc-8004.146.1 0.87 -1.7 134,849 - Xcc-8004.146.1 0.87 +0.1 134,849 - Xcc-8004.146.1 0.87 -0.4 134,849 - Xcc-8004.146.1 0.87 +1.4 134,849 - Xcc-8004.146.1 0.87 -1.5 134,913 + +0.8 134,913 + -1.0 134,913 + +0.9 134,913 + -1.3 134,913 + -2.9 134,913 + -1.0 134,914 - +0.1 134,914 - +0.3 134,914 - +0.9 134,914 - -0.8 134,914 - +0.9 134,914 - +0.1 134,914 - +0.2 134,976 - -0.1 134,976 - -0.1 134,976 - -1.1 134,976 - -0.5 134,976 - +1.3 134,976 - -0.4 134,976 - +1.8 134,976 - -0.7 134,976 - +1.2 134,976 - -0.9 134,978 - -0.7 134,978 - +1.0 134,978 - -0.4 134,978 - -1.3 134,978 - -2.2 134,978 - +0.6 134,978 - +1.9 134,978 - -0.9 134,978 - -0.6 134,978 - -2.9 134,978 - +0.6 134,978 - +0.5 134,998 - +0.4 134,998 - -2.4 135,102 + +1.0 135,102 + -0.4 135,102 + +1.6 135,111 + -1.2 135,111 + -0.6 135,111 + +0.6 135,111 + -0.7 135,111 + -0.3 135,111 + -1.8 135,111 + -1.8 135,120 + -3.1 135,120 + +0.2 135,156 - +1.0 135,206 + -1.0 135,207 - +0.4 135,207 - +1.5 135,207 - +0.5 135,258 - +0.9
Or see this region's nucleotide sequence