Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1185.1

Experiment: Xylemvessel barcodes T1L3P4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1184.1 and Xcc-8004.1185.1 overlap by 4 nucleotidesXcc-8004.1185.1 and Xcc-8004.1186.1 overlap by 4 nucleotidesXcc-8004.1186.1 and Xcc-8004.1187.1 overlap by 4 nucleotides Xcc-8004.1184.1: Xcc-8004.1184.1 - TPR domain protein in aerotolerance operon, at 1,119,233 to 1,121,041 Xcc-8004.1184.1 Xcc-8004.1185.1: Xcc-8004.1185.1 - BatA (Bacteroides aerotolerance operon), at 1,121,038 to 1,122,045 Xcc-8004.1185.1 Xcc-8004.1186.1: Xcc-8004.1186.1 - FIG01211734: hypothetical protein, at 1,122,042 to 1,122,497 Xcc-8004.1186.1 Xcc-8004.1187.1: Xcc-8004.1187.1 - hypothetical protein PA3071, at 1,122,494 to 1,123,465 Xcc-8004.1187.1 Position (kb) 1121 1122 1123Strain fitness (log2 ratio) -3 -2 -1 0 1at 1120.329 kb on + strand, within Xcc-8004.1184.1at 1120.373 kb on - strand, within Xcc-8004.1184.1at 1120.373 kb on - strand, within Xcc-8004.1184.1at 1120.373 kb on - strand, within Xcc-8004.1184.1at 1120.373 kb on - strand, within Xcc-8004.1184.1at 1120.614 kb on + strand, within Xcc-8004.1184.1at 1120.615 kb on - strand, within Xcc-8004.1184.1at 1120.765 kb on - strand, within Xcc-8004.1184.1at 1120.765 kb on - strand, within Xcc-8004.1184.1at 1120.765 kb on - strand, within Xcc-8004.1184.1at 1120.765 kb on - strand, within Xcc-8004.1184.1at 1120.765 kb on - strand, within Xcc-8004.1184.1at 1120.824 kb on + strand, within Xcc-8004.1184.1at 1120.824 kb on + strand, within Xcc-8004.1184.1at 1120.824 kb on + strand, within Xcc-8004.1184.1at 1120.825 kb on - strand, within Xcc-8004.1184.1at 1120.825 kb on - strand, within Xcc-8004.1184.1at 1120.825 kb on - strand, within Xcc-8004.1184.1at 1120.825 kb on - strand, within Xcc-8004.1184.1at 1121.105 kb on + strandat 1121.105 kb on + strandat 1121.108 kb on + strandat 1121.108 kb on + strandat 1121.109 kb on - strandat 1121.109 kb on - strandat 1121.177 kb on + strand, within Xcc-8004.1185.1at 1121.178 kb on - strand, within Xcc-8004.1185.1at 1121.309 kb on + strand, within Xcc-8004.1185.1at 1121.309 kb on + strand, within Xcc-8004.1185.1at 1121.310 kb on - strand, within Xcc-8004.1185.1at 1121.310 kb on - strand, within Xcc-8004.1185.1at 1121.310 kb on - strand, within Xcc-8004.1185.1at 1121.310 kb on - strand, within Xcc-8004.1185.1at 1121.347 kb on + strand, within Xcc-8004.1185.1at 1121.582 kb on + strand, within Xcc-8004.1185.1at 1121.583 kb on - strand, within Xcc-8004.1185.1at 1121.583 kb on - strand, within Xcc-8004.1185.1at 1121.599 kb on + strand, within Xcc-8004.1185.1at 1121.600 kb on - strand, within Xcc-8004.1185.1at 1121.903 kb on + strand, within Xcc-8004.1185.1at 1121.904 kb on - strand, within Xcc-8004.1185.1at 1122.517 kb on + strandat 1122.517 kb on + strandat 1122.518 kb on - strandat 1122.518 kb on - strandat 1122.518 kb on - strandat 1122.518 kb on - strandat 1122.518 kb on - strandat 1122.854 kb on + strand, within Xcc-8004.1187.1at 1122.854 kb on + strand, within Xcc-8004.1187.1at 1122.918 kb on + strand, within Xcc-8004.1187.1at 1122.919 kb on - strand, within Xcc-8004.1187.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T1L3P4
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1,120,329 + Xcc-8004.1184.1 0.61 +0.6
1,120,373 - Xcc-8004.1184.1 0.63 +0.3
1,120,373 - Xcc-8004.1184.1 0.63 +1.2
1,120,373 - Xcc-8004.1184.1 0.63 +1.3
1,120,373 - Xcc-8004.1184.1 0.63 -1.5
1,120,614 + Xcc-8004.1184.1 0.76 -1.2
1,120,615 - Xcc-8004.1184.1 0.76 -1.0
1,120,765 - Xcc-8004.1184.1 0.85 -0.9
1,120,765 - Xcc-8004.1184.1 0.85 -3.4
1,120,765 - Xcc-8004.1184.1 0.85 -0.1
1,120,765 - Xcc-8004.1184.1 0.85 -1.2
1,120,765 - Xcc-8004.1184.1 0.85 +0.8
1,120,824 + Xcc-8004.1184.1 0.88 +0.9
1,120,824 + Xcc-8004.1184.1 0.88 -0.7
1,120,824 + Xcc-8004.1184.1 0.88 +1.3
1,120,825 - Xcc-8004.1184.1 0.88 +0.3
1,120,825 - Xcc-8004.1184.1 0.88 -0.2
1,120,825 - Xcc-8004.1184.1 0.88 +0.5
1,120,825 - Xcc-8004.1184.1 0.88 +1.0
1,121,105 + +1.2
1,121,105 + -0.7
1,121,108 + +0.2
1,121,108 + -0.2
1,121,109 - +0.8
1,121,109 - -2.1
1,121,177 + Xcc-8004.1185.1 0.14 +0.3
1,121,178 - Xcc-8004.1185.1 0.14 +0.0
1,121,309 + Xcc-8004.1185.1 0.27 +0.2
1,121,309 + Xcc-8004.1185.1 0.27 +0.5
1,121,310 - Xcc-8004.1185.1 0.27 -1.2
1,121,310 - Xcc-8004.1185.1 0.27 -2.2
1,121,310 - Xcc-8004.1185.1 0.27 +0.2
1,121,310 - Xcc-8004.1185.1 0.27 -1.5
1,121,347 + Xcc-8004.1185.1 0.31 -1.4
1,121,582 + Xcc-8004.1185.1 0.54 +0.7
1,121,583 - Xcc-8004.1185.1 0.54 +0.2
1,121,583 - Xcc-8004.1185.1 0.54 -0.5
1,121,599 + Xcc-8004.1185.1 0.56 +0.3
1,121,600 - Xcc-8004.1185.1 0.56 -0.9
1,121,903 + Xcc-8004.1185.1 0.86 -2.0
1,121,904 - Xcc-8004.1185.1 0.86 +0.3
1,122,517 + +0.6
1,122,517 + +1.3
1,122,518 - +0.6
1,122,518 - -1.6
1,122,518 - +0.4
1,122,518 - +0.4
1,122,518 - +0.2
1,122,854 + Xcc-8004.1187.1 0.37 +0.5
1,122,854 + Xcc-8004.1187.1 0.37 -0.0
1,122,918 + Xcc-8004.1187.1 0.44 +0.9
1,122,919 - Xcc-8004.1187.1 0.44 -0.6

Or see this region's nucleotide sequence