Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4930

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
5,841,985	+				-1.3
5,841,985	+				-1.1
5,841,985	+				+0.8
5,841,998	+				+0.8
5,841,999	-				-2.1
5,842,043	+				+2.5
5,842,043	+				+0.4
5,842,044	-				-0.1
5,842,044	-				+1.2
5,842,044	-				-0.4
5,842,045	+				+0.2
5,842,045	+				-0.7
5,842,045	+				-1.6
5,842,046	-				-1.1
5,842,046	-				+3.9
5,842,046	-				+0.8
5,842,208	+		Psyr_4929	0.18	+1.1
5,842,208	+		Psyr_4929	0.18	-1.1
5,842,209	-		Psyr_4929	0.19	+0.5
5,842,209	-		Psyr_4929	0.19	+0.3
5,842,209	-		Psyr_4929	0.19	+1.2
5,842,236	+		Psyr_4929	0.24	-0.7
5,842,236	+		Psyr_4929	0.24	-0.8
5,842,236	+		Psyr_4929	0.24	-0.2
5,842,237	-		Psyr_4929	0.25	-0.3
5,842,241	+		Psyr_4929	0.25	-1.1
5,842,242	-		Psyr_4929	0.26	-1.3
5,842,242	-		Psyr_4929	0.26	-0.5
5,842,242	-		Psyr_4929	0.26	+0.5
5,842,242	-		Psyr_4929	0.26	-2.0
5,842,242	-		Psyr_4929	0.26	+1.4
5,842,242	-		Psyr_4929	0.26	+0.1
5,842,242	-		Psyr_4929	0.26	+0.7
5,842,288	+		Psyr_4929	0.35	-1.4
5,842,289	-		Psyr_4929	0.36	-0.4
5,842,333	+		Psyr_4929	0.45	+0.2
5,842,334	-		Psyr_4929	0.45	+0.0
5,842,334	-		Psyr_4929	0.45	+0.4
5,842,439	+		Psyr_4929	0.68	-0.5
5,842,439	+		Psyr_4929	0.68	-0.7
5,842,439	+		Psyr_4929	0.68	+1.6
5,842,439	+		Psyr_4929	0.68	-0.3
5,842,439	+		Psyr_4929	0.68	+1.1
5,842,439	+		Psyr_4929	0.68	+2.0
5,842,440	-		Psyr_4929	0.68	+1.2
5,842,440	-		Psyr_4929	0.68	+0.9
5,842,440	-		Psyr_4929	0.68	-0.3
5,842,440	-		Psyr_4929	0.68	-0.6
5,842,440	-		Psyr_4929	0.68	+2.0
5,842,440	-		Psyr_4929	0.68	-0.1
5,842,440	-		Psyr_4929	0.68	+0.1
5,842,645	+				-1.7
5,842,645	+				-0.7
5,842,646	-				-0.2
5,842,646	-				-0.1
5,842,646	-				-0.5
5,842,646	-				-1.5
5,842,673	+				+0.4
5,842,673	+				+0.1
5,842,673	+				-0.6
5,842,789	+				+1.1
5,842,789	+				-1.5
5,842,789	+				+0.1
5,842,789	+				+1.7
5,842,789	+				-0.6
5,842,789	+				-0.5
5,842,789	+				+0.8
5,842,789	+				-1.5
5,842,789	+				-0.0
5,842,789	+				-0.5
5,842,789	+				+1.4
5,842,789	+				+0.0
5,842,789	+				-0.9
5,842,791	+				-0.1
5,842,921	+				+0.4
5,842,921	+				-0.2
5,842,921	+				-2.0
5,842,922	-				-2.3
5,843,005	+		Psyr_4930	0.11	+0.9
5,843,005	+		Psyr_4930	0.11	+0.2
5,843,005	+		Psyr_4930	0.11	-0.9
5,843,005	+		Psyr_4930	0.11	+0.2
5,843,006	-		Psyr_4930	0.11	+2.3
5,843,006	-		Psyr_4930	0.11	+0.6
5,843,006	-		Psyr_4930	0.11	-0.2
5,843,006	-		Psyr_4930	0.11	-0.1
5,843,006	-		Psyr_4930	0.11	+0.7
5,843,022	+		Psyr_4930	0.12	+0.0
5,843,082	+		Psyr_4930	0.17	-0.5
5,843,082	+		Psyr_4930	0.17	-2.1
5,843,086	+				+0.5
5,843,086	+		Psyr_4930	0.17	-1.4
5,843,086	+		Psyr_4930	0.17	-1.3
5,843,087	-		Psyr_4930	0.18	+0.0
5,843,087	-		Psyr_4930	0.18	+0.1
5,843,087	-		Psyr_4930	0.18	-1.1
5,843,087	-		Psyr_4930	0.18	+0.8
5,843,087	-		Psyr_4930	0.18	-1.5
5,843,098	+		Psyr_4930	0.18	+0.2
5,843,098	+		Psyr_4930	0.18	-0.7
5,843,098	+		Psyr_4930	0.18	-0.0
5,843,098	+		Psyr_4930	0.18	+3.0
5,843,098	+		Psyr_4930	0.18	-0.2
5,843,098	+		Psyr_4930	0.18	-0.3
5,843,099	-		Psyr_4930	0.19	+0.6
5,843,099	-		Psyr_4930	0.19	-1.3
5,843,099	-		Psyr_4930	0.19	+1.7
5,843,102	+		Psyr_4930	0.19	+0.7
5,843,102	+		Psyr_4930	0.19	-0.2
5,843,102	+		Psyr_4930	0.19	+0.4
5,843,103	-		Psyr_4930	0.19	+0.0
5,843,103	-		Psyr_4930	0.19	+0.4
5,843,141	-		Psyr_4930	0.22	-1.4
5,843,188	+		Psyr_4930	0.25	-1.9
5,843,188	+		Psyr_4930	0.25	-0.7
5,843,203	+		Psyr_4930	0.27	-0.4
5,843,203	+		Psyr_4930	0.27	+1.5
5,843,203	+		Psyr_4930	0.27	+1.4
5,843,204	-		Psyr_4930	0.27	-0.5
5,843,204	-		Psyr_4930	0.27	-1.5
5,843,204	-		Psyr_4930	0.27	-0.1
5,843,204	-		Psyr_4930	0.27	-0.3
5,843,204	-		Psyr_4930	0.27	-1.3
5,843,204	-		Psyr_4930	0.27	+0.5
5,843,261	-		Psyr_4930	0.31	+0.2
5,843,446	+		Psyr_4930	0.46	-3.1
5,843,446	+		Psyr_4930	0.46	-1.0
5,843,446	+		Psyr_4930	0.46	-0.4
5,843,446	+		Psyr_4930	0.46	-0.1
5,843,446	+		Psyr_4930	0.46	+0.7
5,843,446	+		Psyr_4930	0.46	-0.6
5,843,446	+		Psyr_4930	0.46	-1.3
5,843,446	+		Psyr_4930	0.46	+0.8
5,843,446	+		Psyr_4930	0.46	-0.6
5,843,447	-		Psyr_4930	0.46	-0.2
5,843,447	-		Psyr_4930	0.46	+0.4
5,843,447	-		Psyr_4930	0.46	+0.5
5,843,447	-		Psyr_4930	0.46	+0.2
5,843,447	-		Psyr_4930	0.46	-0.2
5,843,447	-		Psyr_4930	0.46	-1.4
5,843,447	-		Psyr_4930	0.46	-0.6
5,843,447	-		Psyr_4930	0.46	+1.0
5,843,447	-		Psyr_4930	0.46	-0.5
5,843,447	-		Psyr_4930	0.46	+0.5
5,843,447	-		Psyr_4930	0.46	-0.5
5,843,447	-		Psyr_4930	0.46	+1.4
5,843,447	-		Psyr_4930	0.46	+1.2
5,843,447	-		Psyr_4930	0.46	-1.1
5,843,447	-		Psyr_4930	0.46	+0.4
5,843,462	-		Psyr_4930	0.47	+0.9
5,843,497	+		Psyr_4930	0.50	-0.2
5,843,497	+		Psyr_4930	0.50	+0.7
5,843,498	-		Psyr_4930	0.50	-0.6
5,843,498	-		Psyr_4930	0.50	-1.0
5,843,498	-		Psyr_4930	0.50	-0.3
5,843,498	-		Psyr_4930	0.50	+0.2
5,843,530	+		Psyr_4930	0.52	-1.0
5,843,651	+		Psyr_4930	0.62	-2.2
5,843,652	-		Psyr_4930	0.62	+2.4
5,843,652	-		Psyr_4930	0.62	-2.1
5,843,668	+		Psyr_4930	0.63	-0.5
5,843,668	+		Psyr_4930	0.63	-1.1
5,843,668	+		Psyr_4930	0.63	-0.4
5,843,669	-		Psyr_4930	0.63	-0.3
5,843,698	+		Psyr_4930	0.65	-0.2
5,843,699	-		Psyr_4930	0.66	+0.3
5,843,699	-		Psyr_4930	0.66	+1.5
5,843,734	+		Psyr_4930	0.68	+3.5
5,843,734	+		Psyr_4930	0.68	-0.7
5,843,734	+		Psyr_4930	0.68	-0.3
5,843,882	-		Psyr_4930	0.80	-0.5
5,844,007	+		Psyr_4930	0.90	-0.1
5,844,007	+		Psyr_4930	0.90	+0.2
5,844,007	+		Psyr_4930	0.90	+1.4
5,844,007	+		Psyr_4930	0.90	+0.6
5,844,007	+		Psyr_4930	0.90	+1.5
5,844,007	+		Psyr_4930	0.90	+1.7
5,844,007	+		Psyr_4930	0.90	+0.0
5,844,007	+		Psyr_4930	0.90	+1.8
5,844,008	-		Psyr_4930	0.90	+0.1
5,844,008	-		Psyr_4930	0.90	-1.2
5,844,008	-		Psyr_4930	0.90	+1.0
5,844,008	-		Psyr_4930	0.90	+0.4
5,844,008	-		Psyr_4930	0.90	+1.6
5,844,122	+				-1.2
5,844,123	-				-1.1
5,844,132	-				+2.7
5,844,250	+				+0.1
5,844,250	+				+0.1
5,844,251	-				+0.8
5,844,261	+				-0.6
5,844,261	+				-0.2
5,844,261	+				+4.3
5,844,261	+				+0.7
5,844,261	+				-0.1
5,844,262	-				+0.0
5,844,262	-				+0.8
5,844,262	-				+1.4
5,844,262	-				-0.1
5,844,262	-				-0.2
5,844,262	-				+0.4
5,844,262	-				-1.7
5,844,354	+				+0.3
5,844,354	+				-0.4
5,844,354	+				-2.7
5,844,355	-				-0.4
5,844,554	+				+0.1
5,844,555	-				+0.3
5,844,555	-				-1.2
5,844,595	+				+0.0
5,844,602	-				-0.6
5,844,602	-				-2.2
5,844,602	-				+0.8
5,844,626	+				-1.3
5,844,656	-				+0.7
5,844,684	+				+1.1
5,844,685	-				+1.5
5,844,728	+				-1.8
5,844,729	-				+2.1
5,844,731	+				+0.5
5,844,732	-				-1.1
5,844,732	-				+0.1
5,844,732	-				+1.2
5,844,762	+				-0.5
5,844,763	-				-0.1
5,844,766	+				-0.6
5,844,773	-				+1.3
5,844,773	-				+0.2
5,844,773	-				+1.4
5,844,773	-				-0.2
5,844,773	-				+0.3
5,844,777	-				-0.7
5,844,779	+				-0.0
5,844,786	+				+0.2
5,844,786	+				+0.4
5,844,842	+				-0.2
5,844,842	+				+2.2
5,844,842	+				-0.0
5,844,843	-				+0.4
5,844,843	-				-0.2
5,844,843	-				+1.0
5,844,843	-				-0.2
5,844,843	-				+0.2
5,844,981	+		Psyr_4932	0.18	-0.5
5,844,981	+		Psyr_4932	0.18	+0.1
5,844,981	+		Psyr_4932	0.18	+1.4
5,844,981	+		Psyr_4932	0.18	+0.3
5,844,981	+		Psyr_4932	0.18	+9.2
5,844,981	+		Psyr_4932	0.18	+0.3
5,844,982	-		Psyr_4932	0.18	-0.3
5,844,982	-		Psyr_4932	0.18	+0.7
5,844,982	-		Psyr_4932	0.18	-1.7
5,844,982	-		Psyr_4932	0.18	+0.4
5,844,982	-		Psyr_4932	0.18	+0.4
5,844,982	-		Psyr_4932	0.18	+1.1
5,844,982	-		Psyr_4932	0.18	-0.6
5,845,090	+		Psyr_4932	0.28	-0.2
5,845,100	-		Psyr_4932	0.28	-1.4