Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4878

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
5,788,672	+				-1.9
5,788,672	+				+0.3
5,788,673	-				-2.5
5,788,676	+				-1.7
5,788,676	+				+0.6
5,788,677	-				+0.4
5,788,677	-				-1.0
5,788,701	-				+0.8
5,788,744	+				+1.5
5,788,744	+				-0.1
5,788,768	+				-1.3
5,788,769	-				+3.2
5,788,812	-				-0.2
5,788,871	+				-0.5
5,788,871	+				-1.8
5,788,871	+				-0.5
5,788,871	+				-0.2
5,788,872	-				+0.4
5,788,872	-				-0.1
5,788,872	-				+0.5
5,788,930	+		Psyr_4877	0.17	-0.9
5,788,930	+		Psyr_4877	0.17	-0.9
5,788,930	+		Psyr_4877	0.17	-1.1
5,788,930	+		Psyr_4877	0.17	-1.4
5,788,930	+		Psyr_4877	0.17	-0.0
5,788,931	-		Psyr_4877	0.17	+0.0
5,788,973	+		Psyr_4877	0.24	-0.2
5,788,973	+		Psyr_4877	0.24	+0.4
5,788,973	+		Psyr_4877	0.24	-0.6
5,788,973	+		Psyr_4877	0.24	+1.0
5,788,973	+		Psyr_4877	0.24	+3.8
5,788,973	+		Psyr_4877	0.24	-3.0
5,788,973	+		Psyr_4877	0.24	-0.1
5,788,973	+		Psyr_4877	0.24	-1.5
5,788,973	+		Psyr_4877	0.24	+1.0
5,788,974	-		Psyr_4877	0.24	-1.4
5,788,974	-		Psyr_4877	0.24	+1.1
5,788,974	-		Psyr_4877	0.24	-0.5
5,788,974	-		Psyr_4877	0.24	+0.6
5,788,974	-		Psyr_4877	0.24	+2.2
5,788,974	-		Psyr_4877	0.24	-0.6
5,788,974	-		Psyr_4877	0.24	-0.4
5,788,974	-		Psyr_4877	0.24	+0.1
5,789,025	+		Psyr_4877	0.32	+0.4
5,789,046	-		Psyr_4877	0.35	-0.3
5,789,049	+		Psyr_4877	0.36	+0.0
5,789,049	+		Psyr_4877	0.36	+1.0
5,789,050	-		Psyr_4877	0.36	+2.0
5,789,050	-		Psyr_4877	0.36	+0.7
5,789,138	+		Psyr_4877	0.49	-0.2
5,789,139	-		Psyr_4877	0.50	+0.9
5,789,139	-		Psyr_4877	0.50	-2.6
5,789,398	+				-0.2
5,789,398	+				-1.2
5,789,398	+				+1.4
5,789,398	+				-2.1
5,789,398	+				-2.5
5,789,398	+				-0.1
5,789,399	-				+1.1
5,789,497	-				+1.0
5,789,498	+				-0.5
5,789,498	+				+1.4
5,789,498	+				-1.5
5,789,498	+				-0.5
5,789,498	+				-0.5
5,789,498	+				+0.9
5,789,498	+				+0.5
5,789,498	+				+0.1
5,789,498	+				+1.4
5,789,498	+				-0.5
5,789,499	-				-0.5
5,789,499	-				+0.6
5,789,499	-				-0.0
5,789,499	-				+1.7
5,789,499	-				-1.0
5,789,499	-				-0.9
5,789,499	-				+1.2
5,789,499	-				+0.3
5,789,499	-				-2.7
5,789,499	-				-0.0
5,789,499	-				-1.7
5,789,542	+				-0.2
5,789,614	+				-1.5
5,789,624	+				-1.1
5,789,624	+				+1.0
5,789,625	-				-1.8
5,789,625	-				-0.9
5,789,625	-				-0.6
5,789,630	+				-0.7
5,789,630	+				-0.5
5,789,630	+				-0.4
5,789,630	+				-1.3
5,789,630	+				-1.3
5,789,630	+				-0.1
5,789,630	+				+0.1
5,789,630	+				-0.9
5,789,631	-				+0.0
5,789,631	-				-2.3
5,789,631	-				+0.1
5,789,631	-				-2.3
5,789,631	-				-1.5
5,789,631	-				-0.0
5,789,631	-				+0.3
5,789,640	+				-0.9
5,789,640	+				-1.5
5,789,640	+				-1.6
5,789,640	+				-0.4
5,789,640	+				-0.4
5,789,640	+				+0.7
5,789,641	-				-1.8
5,789,641	-				-1.1
5,789,641	-				-0.9
5,789,642	+				-2.0
5,789,642	+				-1.0
5,789,642	+				+1.5
5,789,642	+				-0.7
5,789,642	+				+0.6
5,789,642	+				-1.8
5,789,642	+				-0.1
5,789,642	+				-2.7
5,789,642	+				-1.1
5,789,642	+				-0.7
5,789,642	+				-3.1
5,789,642	+				-0.5
5,789,642	+				-2.2
5,789,642	+				-3.9
5,789,643	-				-1.5
5,789,643	-				-1.2
5,789,643	-				-0.1
5,789,643	-				-1.9
5,789,643	-				-0.5
5,789,643	-				+3.2
5,789,643	-				-1.1
5,789,643	-				-2.1
5,789,643	-				-2.2
5,789,643	-				-0.8
5,789,643	-				+0.4
5,789,643	-				-0.1
5,789,643	-				+1.0
5,789,643	-				-2.8
5,789,643	-				-0.9
5,789,643	-				+1.1
5,789,643	-				-1.7
5,789,643	-				-2.9
5,789,643	-				-1.1
5,789,643	-				-0.7
5,789,643	-				-2.3
5,789,643	-				+0.5
5,789,643	-				+0.6
5,789,648	+				-1.3
5,789,648	+				-1.6
5,789,648	+				-2.6
5,789,648	+				-1.5
5,789,648	+				-1.5
5,789,648	+				-1.7
5,789,648	+				-1.2
5,789,648	+				-3.4
5,789,648	+				-2.4
5,789,648	+				-2.6
5,789,648	+				+1.3
5,789,649	-				-1.2
5,789,649	-				-1.0
5,789,649	-				+1.3
5,789,649	-				-1.8
5,789,649	-				-1.5
5,789,685	+				-1.9
5,789,685	+				-0.9
5,789,685	+				-2.1
5,789,685	+				-1.0
5,789,685	+				-2.1
5,789,686	-				-0.2
5,789,686	-				-1.0
5,789,686	-				-0.0
5,789,686	-				-0.7
5,789,688	+				-3.0
5,789,758	+				-0.4
5,789,758	+				+0.3
5,789,758	+				-0.2
5,789,758	+				-0.0
5,789,758	+				-0.3
5,789,759	-				-1.3
5,789,759	-				-0.3
5,789,759	-				-1.4
5,789,762	+				-1.5
5,789,762	+				-2.0
5,789,762	+				-0.4
5,789,775	+		Psyr_4878	0.11	+0.0
5,789,776	-		Psyr_4878	0.11	-2.0
5,789,843	+		Psyr_4878	0.16	-0.4
5,789,843	+		Psyr_4878	0.16	-1.3
5,789,844	-		Psyr_4878	0.16	-1.0
5,789,844	-		Psyr_4878	0.16	-2.4
5,789,891	+		Psyr_4878	0.19	-0.2
5,789,891	+		Psyr_4878	0.19	-1.6
5,789,891	+		Psyr_4878	0.19	-2.0
5,789,891	+		Psyr_4878	0.19	-2.1
5,789,891	+		Psyr_4878	0.19	-2.0
5,789,892	-		Psyr_4878	0.20	-0.6
5,789,892	-		Psyr_4878	0.20	-0.7
5,789,892	-		Psyr_4878	0.20	-2.8
5,789,892	-		Psyr_4878	0.20	-1.1
5,789,892	-		Psyr_4878	0.20	+0.4
5,789,963	+		Psyr_4878	0.25	-1.4
5,789,963	+		Psyr_4878	0.25	-0.2
5,789,963	+		Psyr_4878	0.25	-0.2
5,789,964	-		Psyr_4878	0.25	-0.9
5,789,964	-		Psyr_4878	0.25	-1.5
5,789,964	-		Psyr_4878	0.25	-2.0
5,789,964	-		Psyr_4878	0.25	+1.2
5,789,964	-		Psyr_4878	0.25	-1.8
5,789,964	-		Psyr_4878	0.25	+3.3
5,789,964	-		Psyr_4878	0.25	-1.3
5,789,982	+		Psyr_4878	0.26	-2.5
5,790,010	+		Psyr_4878	0.28	-0.6
5,790,010	+		Psyr_4878	0.28	-3.2
5,790,010	+		Psyr_4878	0.28	-0.6
5,790,010	+		Psyr_4878	0.28	-2.0
5,790,010	+		Psyr_4878	0.28	-0.7
5,790,010	+		Psyr_4878	0.28	-1.1
5,790,010	+		Psyr_4878	0.28	-2.2
5,790,010	+		Psyr_4878	0.28	-0.6
5,790,011	-		Psyr_4878	0.28	-0.3
5,790,011	-		Psyr_4878	0.28	-1.1
5,790,030	-		Psyr_4878	0.30	-1.6
5,790,030	-		Psyr_4878	0.30	-1.2
5,790,030	-		Psyr_4878	0.30	+0.1
5,790,095	+		Psyr_4878	0.35	-0.5
5,790,096	-		Psyr_4878	0.35	-1.9
5,790,096	-		Psyr_4878	0.35	-2.0
5,790,096	-		Psyr_4878	0.35	-0.9
5,790,096	-		Psyr_4878	0.35	-1.2
5,790,096	-		Psyr_4878	0.35	-1.0
5,790,138	+		Psyr_4878	0.38	-2.2
5,790,174	-		Psyr_4878	0.40	-2.6
5,790,296	+		Psyr_4878	0.50	-1.6
5,790,296	+		Psyr_4878	0.50	-1.2
5,790,296	+		Psyr_4878	0.50	-3.0
5,790,296	+		Psyr_4878	0.50	-2.1
5,790,297	-		Psyr_4878	0.50	+0.5
5,790,297	-		Psyr_4878	0.50	-1.9
5,790,297	-		Psyr_4878	0.50	+0.4
5,790,317	+		Psyr_4878	0.51	+0.3
5,790,317	+		Psyr_4878	0.51	-1.8
5,790,320	+		Psyr_4878	0.51	-0.2
5,790,320	+		Psyr_4878	0.51	-3.9
5,790,320	+		Psyr_4878	0.51	-3.1
5,790,321	-		Psyr_4878	0.51	-0.9
5,790,323	+		Psyr_4878	0.52	+0.3
5,790,323	+		Psyr_4878	0.52	+3.1
5,790,323	+		Psyr_4878	0.52	+1.4
5,790,323	+		Psyr_4878	0.52	+0.0
5,790,323	+		Psyr_4878	0.52	-1.3
5,790,324	-		Psyr_4878	0.52	-1.1
5,790,324	-		Psyr_4878	0.52	-3.5
5,790,324	-		Psyr_4878	0.52	-3.0
5,790,471	+		Psyr_4878	0.63	-2.7
5,790,471	+		Psyr_4878	0.63	-0.7
5,790,472	-		Psyr_4878	0.63	-2.2
5,790,576	+		Psyr_4878	0.70	-1.1
5,790,597	+		Psyr_4878	0.72	-2.2
5,790,660	+		Psyr_4878	0.77	-1.4
5,790,660	+		Psyr_4878	0.77	-1.2
5,790,660	+		Psyr_4878	0.77	-0.2
5,790,660	+		Psyr_4878	0.77	-0.3
5,790,660	+		Psyr_4878	0.77	-1.5
5,790,678	+		Psyr_4878	0.78	-1.4
5,790,678	+		Psyr_4878	0.78	-0.9
5,790,681	+		Psyr_4878	0.78	-1.5
5,790,681	+		Psyr_4878	0.78	-0.8
5,790,681	+		Psyr_4878	0.78	-0.5
5,790,681	+		Psyr_4878	0.78	-3.6
5,790,681	+		Psyr_4878	0.78	-0.8
5,790,681	+		Psyr_4878	0.78	-1.9
5,790,681	+		Psyr_4878	0.78	-0.9
5,790,682	-		Psyr_4878	0.78	-2.0
5,790,697	-		Psyr_4878	0.79	-1.2
5,790,733	+		Psyr_4878	0.82	-1.6
5,790,775	-		Psyr_4878	0.85	+1.2
5,790,863	+				-1.2
5,790,863	+				-2.4
5,790,863	+				-1.3
5,790,863	+				-1.2
5,790,864	-				-0.3
5,790,870	+				-0.3
5,790,871	-				-1.7
5,790,871	-				-0.2
5,790,892	-				-0.8
5,790,892	-				-1.7
5,790,934	+				-1.1
5,790,934	+				-0.0
5,790,934	+				-1.9
5,790,935	-				-3.1
5,790,935	-				-1.7
5,790,976	+				-0.8
5,790,976	+				-2.6
5,790,976	+				-2.2
5,790,976	+				-0.2
5,790,977	-				-2.2
5,790,977	-				-0.8
5,790,977	-				-1.7
5,790,979	+				-1.0
5,790,979	+				-0.9
5,790,979	+				-2.4
5,790,980	-				+4.1
5,790,980	-				+0.1
5,790,980	-				-1.2
5,790,980	-				-0.1
5,790,980	-				-0.4
5,790,980	-				-0.4
5,791,004	+				-0.7
5,791,006	+				-0.6
5,791,043	-				-1.4
5,791,102	+				-1.6
5,791,103	-				-1.3
5,791,103	-				-0.1
5,791,103	-				+0.8
5,791,240	+				-0.5
5,791,258	+				-1.9
5,791,374	+				-0.2
5,791,375	-				+0.8
5,791,375	-				+0.2
5,791,405	+				-1.5
5,791,405	+				+0.1
5,791,406	-				+1.7
5,791,406	-				+1.2
5,791,406	-				+0.2
5,791,525	+		Psyr_4879	0.26	+3.6
5,791,730	+		Psyr_4879	0.72	+0.7
5,791,730	+		Psyr_4879	0.72	-1.3
5,791,731	-		Psyr_4879	0.73	+0.7
5,791,731	-		Psyr_4879	0.73	+0.0
5,791,731	-		Psyr_4879	0.73	-0.6
5,791,731	-		Psyr_4879	0.73	-1.9
5,791,776	-		Psyr_4879	0.83	-2.1
5,791,811	-				-0.2
5,791,817	-				-0.1
5,791,835	+				-0.6
5,791,836	-				+0.1
5,791,851	-				+1.3
5,791,938	+				+0.9
5,791,938	+				+0.1
5,791,938	+				-0.5
5,791,938	+				+2.1
5,791,938	+				-0.6
5,791,938	+				-0.1
5,791,939	-				-1.1
5,791,939	-				-1.3
5,791,942	+				+1.7
5,791,943	-				-2.1
5,791,943	-				+1.2
5,791,943	-				+0.2
5,791,943	-				-1.6
5,791,943	-				+0.6
5,791,943	-				+0.9
5,791,945	+				-0.7
5,791,945	+				+1.2
5,791,945	+				-0.7
5,791,945	+				-0.7
5,791,945	+				+0.1
5,791,945	+				+1.1
5,791,945	+				+0.6
5,791,946	-				+0.7
5,791,946	-				-0.9
5,791,946	-				-1.8
5,791,946	-				+0.9
5,791,946	-				-1.2
5,791,971	+				-0.1
5,791,971	+				+0.1
5,791,972	-				+0.5
5,791,972	-				-2.1