Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4770

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
5,645,873	-		Psyr_4769	0.50	+0.5
5,645,911	-		Psyr_4769	0.53	+0.5
5,645,987	+		Psyr_4769	0.58	+0.3
5,646,246	+		Psyr_4769	0.76	-0.8
5,646,314	+		Psyr_4769	0.81	-0.3
5,646,314	+		Psyr_4769	0.81	-2.6
5,646,449	-				+0.5
5,646,449	-				+2.1
5,646,533	+				-2.9
5,646,533	+				-0.4
5,646,533	+				-1.5
5,646,534	-				+1.1
5,646,534	-				+3.1
5,646,681	+				-1.2
5,646,682	-				+3.0
5,646,716	+				-0.5
5,646,717	-				+2.8
5,646,718	+				-1.1
5,646,718	+				-0.9
5,646,719	-				+4.3
5,646,724	+				-1.0
5,646,744	+				-1.1
5,646,744	+				-3.0
5,646,744	+				-0.9
5,646,744	+				-3.0
5,646,745	-				+2.7
5,646,745	-				+2.6
5,646,745	-				+3.5
5,646,792	+				-2.5
5,646,807	+				-2.7
5,646,808	-				+3.5
5,646,811	-				+3.6
5,646,859	-				+4.5
5,646,875	+				+2.9
5,646,875	+				+3.2
5,647,027	+				+4.2
5,647,106	-		Psyr_4770	0.10	+3.1
5,647,118	-		Psyr_4770	0.11	+0.4
5,647,118	-		Psyr_4770	0.11	+3.1
5,647,171	+		Psyr_4770	0.13	+1.2
5,647,171	+		Psyr_4770	0.13	+2.9
5,647,172	-		Psyr_4770	0.13	+2.6
5,647,172	-				+4.2
5,647,196	+		Psyr_4770	0.14	+2.6
5,647,196	+		Psyr_4770	0.14	+1.9
5,647,197	-		Psyr_4770	0.14	+3.0
5,647,197	-		Psyr_4770	0.14	+1.9
5,647,197	-		Psyr_4770	0.14	+2.3
5,647,390	+		Psyr_4770	0.21	+2.7
5,647,391	-		Psyr_4770	0.21	+2.0
5,647,449	+		Psyr_4770	0.23	+1.6
5,647,450	-		Psyr_4770	0.23	+3.0
5,647,453	+		Psyr_4770	0.23	+3.2
5,647,453	+		Psyr_4770	0.23	+2.1
5,647,453	+		Psyr_4770	0.23	+4.1
5,647,453	+		Psyr_4770	0.23	+1.5
5,647,453	+		Psyr_4770	0.23	+2.4
5,647,453	+		Psyr_4770	0.23	+2.1
5,647,453	+		Psyr_4770	0.23	+3.0
5,647,453	+		Psyr_4770	0.23	+3.3
5,647,453	+		Psyr_4770	0.23	+3.3
5,647,454	-		Psyr_4770	0.23	+1.2
5,647,454	-		Psyr_4770	0.23	+0.3
5,647,454	-		Psyr_4770	0.23	+3.2
5,647,454	-		Psyr_4770	0.23	+2.8
5,647,454	-		Psyr_4770	0.23	+1.4
5,647,454	-		Psyr_4770	0.23	+2.7
5,647,454	-		Psyr_4770	0.23	+3.7
5,647,537	+		Psyr_4770	0.26	+1.5
5,647,571	-		Psyr_4770	0.27	+0.8
5,647,579	+		Psyr_4770	0.28	+4.1
5,647,579	+		Psyr_4770	0.28	+2.7
5,647,579	+		Psyr_4770	0.28	+2.3
5,647,580	-		Psyr_4770	0.28	+2.5
5,647,580	-		Psyr_4770	0.28	+4.1
5,647,707	+		Psyr_4770	0.32	+1.8
5,647,833	+		Psyr_4770	0.37	+1.5
5,647,859	+		Psyr_4770	0.38	+2.0
5,647,859	+		Psyr_4770	0.38	+3.7
5,647,859	+		Psyr_4770	0.38	+2.2
5,647,859	+		Psyr_4770	0.38	+1.1
5,647,860	-		Psyr_4770	0.38	+1.7
5,647,860	-		Psyr_4770	0.38	+2.0
5,647,860	-		Psyr_4770	0.38	+3.5
5,647,933	+		Psyr_4770	0.41	+2.5
5,647,933	+		Psyr_4770	0.41	+2.0
5,647,937	+		Psyr_4770	0.41	+3.3
5,647,937	+		Psyr_4770	0.41	+3.4
5,647,937	+		Psyr_4770	0.41	+5.7
5,647,937	+		Psyr_4770	0.41	+3.1
5,647,937	+		Psyr_4770	0.41	+3.5
5,647,937	+		Psyr_4770	0.41	+3.4
5,647,938	-		Psyr_4770	0.41	+1.2
5,647,938	-		Psyr_4770	0.41	+5.0
5,647,938	-		Psyr_4770	0.41	+3.0
5,647,967	-		Psyr_4770	0.42	+3.8
5,648,117	-		Psyr_4770	0.48	+2.1
5,648,117	-		Psyr_4770	0.48	+2.4
5,648,147	-		Psyr_4770	0.49	+2.7
5,648,173	+		Psyr_4770	0.50	+2.6
5,648,173	+		Psyr_4770	0.50	+3.3
5,648,173	+		Psyr_4770	0.50	+0.3
5,648,173	+		Psyr_4770	0.50	+2.3
5,648,173	+		Psyr_4770	0.50	+2.1
5,648,173	+		Psyr_4770	0.50	+3.0
5,648,174	-		Psyr_4770	0.50	+3.6
5,648,174	-		Psyr_4770	0.50	+2.6
5,648,174	-		Psyr_4770	0.50	+2.0
5,648,174	-		Psyr_4770	0.50	+0.5
5,648,174	-		Psyr_4770	0.50	+2.0
5,648,174	-		Psyr_4770	0.50	+1.1
5,648,175	+		Psyr_4770	0.50	+1.6
5,648,185	+		Psyr_4770	0.50	+2.1
5,648,185	+		Psyr_4770	0.50	+3.8
5,648,185	+		Psyr_4770	0.50	+2.8
5,648,185	+		Psyr_4770	0.50	+2.4
5,648,186	-		Psyr_4770	0.50	+1.8
5,648,240	-		Psyr_4770	0.52	+4.0
5,648,453	+		Psyr_4770	0.60	+3.2
5,648,453	+		Psyr_4770	0.60	+3.3
5,648,453	+		Psyr_4770	0.60	+2.6
5,648,740	+		Psyr_4770	0.71	+3.1
5,648,740	+		Psyr_4770	0.71	+3.0
5,648,741	-		Psyr_4770	0.71	+2.4
5,648,741	-		Psyr_4770	0.71	+2.9
5,648,741	-		Psyr_4770	0.71	+6.9
5,648,741	-		Psyr_4770	0.71	+3.7
5,648,803	+		Psyr_4770	0.73	+0.7
5,648,803	+		Psyr_4770	0.73	+3.0
5,648,803	+		Psyr_4770	0.73	+0.4
5,648,803	+		Psyr_4770	0.73	+2.3
5,648,803	+		Psyr_4770	0.73	+3.3
5,648,804	-		Psyr_4770	0.73	+2.4
5,648,804	-		Psyr_4770	0.73	-1.7
5,648,804	-		Psyr_4770	0.73	+0.4
5,648,804	-		Psyr_4770	0.73	+2.0
5,648,804	-		Psyr_4770	0.73	+2.7
5,648,947	-		Psyr_4770	0.79	+3.6
5,649,030	-		Psyr_4770	0.82	+3.8
5,649,030	-		Psyr_4770	0.82	+2.4
5,649,159	+		Psyr_4770	0.86	+2.6
5,649,245	-		Psyr_4770	0.90	+1.6
5,649,245	-		Psyr_4770	0.90	+4.5
5,649,448	+				+2.6
5,649,572	-				+1.8
5,649,572	-				+0.6
5,649,575	-				+0.7
5,649,594	+				+1.2
5,649,594	+				-0.3
5,649,594	+				-1.9
5,649,595	-				+1.1
5,649,595	-				-0.9
5,649,595	-				+1.2
5,649,610	+				-2.0
5,649,610	+				+0.8
5,649,610	+				+0.6
5,649,610	+				-1.0
5,649,610	+				+1.0
5,649,610	+				-1.1
5,649,610	+				+0.9
5,649,610	+				-1.8
5,649,610	+				+1.5
5,649,610	+				+1.4
5,649,610	+				-0.6
5,649,610	+				+0.7
5,649,611	-				-0.8
5,649,611	-				-0.5
5,649,611	-				+0.8
5,649,611	-				+2.7
5,649,611	-				+0.1
5,649,611	-				+1.1
5,649,611	-				+1.0
5,649,611	-				-2.7
5,649,611	-				+0.7
5,649,611	-				+1.2
5,649,614	+				-1.2
5,649,614	+				-1.3
5,649,614	+				+1.2
5,649,614	+				+0.6
5,649,614	+				+3.1
5,649,614	+				+1.8
5,649,614	+				-1.8
5,649,614	+				-3.0
5,649,614	+				+1.1
5,649,614	+				-0.5
5,649,614	+				-1.5
5,649,615	-				+1.9
5,649,615	-				-0.3
5,649,615	-				+0.7
5,649,615	-				+3.0
5,649,615	-				+4.3
5,649,615	-				+2.1
5,649,615	-				-0.5
5,649,615	-				+0.3
5,649,615	-				+0.6
5,649,615	-				-1.5
5,649,615	-				-1.2
5,649,615	-				+0.3
5,649,615	-				-0.0
5,649,615	-				+0.8
5,649,615	-				+1.3
5,649,615	-				-0.6
5,649,615	-				+0.1
5,649,666	-				+0.7
5,649,695	+				+0.0
5,649,710	+				+1.5
5,649,710	+				+0.8
5,649,711	-				-1.0
5,649,711	-				+1.3
5,649,753	+		Psyr_4771	0.12	+0.7
5,649,753	+		Psyr_4771	0.12	-0.2
5,649,753	+		Psyr_4771	0.12	-0.2
5,649,753	+		Psyr_4771	0.12	+0.9
5,649,753	+		Psyr_4771	0.12	+0.0
5,649,753	+		Psyr_4771	0.12	-0.3
5,649,937	+		Psyr_4771	0.41	-0.2
5,649,937	+		Psyr_4771	0.41	-0.2
5,649,938	-		Psyr_4771	0.41	-0.8
5,649,992	-		Psyr_4771	0.49	-0.7
5,649,992	-		Psyr_4771	0.49	+1.4
5,650,108	+		Psyr_4771	0.67	-0.8
5,650,108	+		Psyr_4771	0.67	-0.5
5,650,109	-		Psyr_4771	0.67	+1.4
5,650,109	-		Psyr_4771	0.67	+1.6
5,650,243	+		Psyr_4771	0.88	+1.4
5,650,243	+		Psyr_4771	0.88	-0.2
5,650,255	+		Psyr_4771	0.90	+1.0
5,650,255	+		Psyr_4771	0.90	-1.4
5,650,255	+		Psyr_4771	0.90	+1.5
5,650,255	+		Psyr_4771	0.90	-1.7
5,650,256	-				+0.4
5,650,398	+				-0.1
5,650,398	+				+1.2
5,650,401	+				-0.7
5,650,401	+				+0.0
5,650,491	+				-0.1
5,650,492	-				+1.1
5,650,492	-				+0.1
5,650,492	-				-0.2
5,650,492	-				+0.6
5,650,492	-				+0.1
5,650,492	-				-0.2
5,650,492	-				+0.7
5,650,495	+				+1.8
5,650,495	+				-0.6
5,650,495	+				+0.7
5,650,495	+				+0.4
5,650,495	+				+0.7
5,650,495	+				+0.8
5,650,495	+				+1.2
5,650,495	+				-0.9
5,650,495	+				+0.1
5,650,495	+				-0.1
5,650,495	+				+1.7
5,650,495	+				-0.1
5,650,495	+				+1.3
5,650,495	+				+0.7
5,650,495	+				+0.9
5,650,496	-				-1.2
5,650,496	-				+0.6
5,650,496	-				-1.3
5,650,496	-				+0.3
5,650,496	-				+0.2
5,650,496	-				+1.0
5,650,496	-				+1.0
5,650,496	-				+0.1
5,650,496	-				+1.5
5,650,496	-				-0.7
5,650,496	-				+1.7
5,650,496	-				-0.5
5,650,497	+				-0.7