Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4678

Experiment: library passed through aphids in food, 72 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4677 and Psyr_4678 are separated by 169 nucleotidesPsyr_4678 and Psyr_4679 are separated by 609 nucleotides Psyr_4677: Psyr_4677 - Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region, at 5,542,945 to 5,544,723 _4677 Psyr_4678: Psyr_4678 - GGDEF domain protein, at 5,544,893 to 5,546,191 _4678 Psyr_4679: Psyr_4679 - ISPsy9, transposase OrfA, at 5,546,801 to 5,547,340 _4679 Position (kb) 5544 5545 5546 5547Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 5544.257 kb on + strand, within Psyr_4677at 5544.257 kb on + strand, within Psyr_4677at 5544.257 kb on + strand, within Psyr_4677at 5544.257 kb on + strandat 5544.257 kb on + strand, within Psyr_4677at 5544.257 kb on + strand, within Psyr_4677at 5544.257 kb on + strand, within Psyr_4677at 5544.257 kb on + strand, within Psyr_4677at 5544.257 kb on + strand, within Psyr_4677at 5544.257 kb on + strand, within Psyr_4677at 5544.257 kb on + strand, within Psyr_4677at 5544.257 kb on + strand, within Psyr_4677at 5544.258 kb on - strand, within Psyr_4677at 5544.258 kb on - strand, within Psyr_4677at 5544.258 kb on - strand, within Psyr_4677at 5544.261 kb on + strand, within Psyr_4677at 5544.261 kb on + strand, within Psyr_4677at 5544.261 kb on + strand, within Psyr_4677at 5544.261 kb on + strand, within Psyr_4677at 5544.261 kb on + strand, within Psyr_4677at 5544.261 kb on + strand, within Psyr_4677at 5544.261 kb on + strand, within Psyr_4677at 5544.262 kb on - strand, within Psyr_4677at 5544.262 kb on - strand, within Psyr_4677at 5544.262 kb on - strand, within Psyr_4677at 5544.262 kb on - strand, within Psyr_4677at 5544.262 kb on - strand, within Psyr_4677at 5544.439 kb on + strand, within Psyr_4677at 5544.440 kb on - strand, within Psyr_4677at 5544.464 kb on + strand, within Psyr_4677at 5544.465 kb on - strand, within Psyr_4677at 5544.471 kb on + strand, within Psyr_4677at 5544.471 kb on + strand, within Psyr_4677at 5544.471 kb on + strand, within Psyr_4677at 5544.472 kb on - strand, within Psyr_4677at 5544.472 kb on - strand, within Psyr_4677at 5544.472 kb on - strand, within Psyr_4677at 5544.472 kb on - strand, within Psyr_4677at 5544.473 kb on + strand, within Psyr_4677at 5544.473 kb on + strand, within Psyr_4677at 5544.473 kb on + strand, within Psyr_4677at 5544.473 kb on + strand, within Psyr_4677at 5544.474 kb on - strand, within Psyr_4677at 5544.580 kb on - strandat 5544.711 kb on + strandat 5544.711 kb on + strandat 5544.713 kb on + strandat 5544.713 kb on + strandat 5544.713 kb on + strandat 5544.713 kb on + strandat 5544.713 kb on + strandat 5544.714 kb on - strandat 5544.857 kb on + strandat 5544.880 kb on + strandat 5544.881 kb on - strandat 5544.881 kb on - strandat 5544.984 kb on + strandat 5544.984 kb on + strandat 5544.984 kb on + strandat 5544.984 kb on + strandat 5544.984 kb on + strandat 5544.984 kb on + strandat 5544.984 kb on + strandat 5544.984 kb on + strandat 5544.985 kb on - strandat 5544.985 kb on - strandat 5544.985 kb on - strandat 5545.161 kb on + strand, within Psyr_4678at 5545.161 kb on + strand, within Psyr_4678at 5545.392 kb on + strand, within Psyr_4678at 5545.392 kb on + strand, within Psyr_4678at 5545.392 kb on + strand, within Psyr_4678at 5545.392 kb on + strand, within Psyr_4678at 5545.392 kb on + strand, within Psyr_4678at 5545.392 kb on + strand, within Psyr_4678at 5545.392 kb on + strand, within Psyr_4678at 5545.392 kb on + strand, within Psyr_4678at 5545.392 kb on + strand, within Psyr_4678at 5545.392 kb on + strand, within Psyr_4678at 5545.392 kb on + strand, within Psyr_4678at 5545.392 kb on + strand, within Psyr_4678at 5545.393 kb on - strand, within Psyr_4678at 5545.393 kb on - strand, within Psyr_4678at 5545.393 kb on - strand, within Psyr_4678at 5545.393 kb on - strand, within Psyr_4678at 5545.393 kb on - strand, within Psyr_4678at 5545.393 kb on - strand, within Psyr_4678at 5545.393 kb on - strand, within Psyr_4678at 5545.393 kb on - strand, within Psyr_4678at 5545.393 kb on - strand, within Psyr_4678at 5545.393 kb on - strand, within Psyr_4678at 5545.393 kb on - strand, within Psyr_4678at 5545.393 kb on - strand, within Psyr_4678at 5545.393 kb on - strand, within Psyr_4678at 5545.393 kb on - strand, within Psyr_4678at 5545.393 kb on - strand, within Psyr_4678at 5545.393 kb on - strand, within Psyr_4678at 5545.393 kb on - strand, within Psyr_4678at 5545.393 kb on - strand, within Psyr_4678at 5545.477 kb on - strand, within Psyr_4678at 5545.477 kb on - strand, within Psyr_4678at 5545.674 kb on + strand, within Psyr_4678at 5545.675 kb on - strand, within Psyr_4678at 5545.860 kb on + strand, within Psyr_4678at 5545.945 kb on - strand, within Psyr_4678at 5545.945 kb on - strand, within Psyr_4678at 5545.972 kb on - strand, within Psyr_4678at 5545.974 kb on + strand, within Psyr_4678at 5545.975 kb on - strand, within Psyr_4678at 5545.983 kb on + strand, within Psyr_4678at 5545.983 kb on + strand, within Psyr_4678at 5545.983 kb on + strand, within Psyr_4678at 5545.983 kb on + strand, within Psyr_4678at 5545.983 kb on + strand, within Psyr_4678at 5545.983 kb on + strand, within Psyr_4678at 5545.983 kb on + strand, within Psyr_4678at 5545.983 kb on + strand, within Psyr_4678at 5545.983 kb on + strand, within Psyr_4678at 5545.983 kb on + strand, within Psyr_4678at 5545.983 kb on + strand, within Psyr_4678at 5545.983 kb on + strand, within Psyr_4678at 5545.983 kb on + strand, within Psyr_4678at 5545.983 kb on + strand, within Psyr_4678at 5545.983 kb on + strand, within Psyr_4678at 5545.983 kb on + strand, within Psyr_4678at 5545.983 kb on + strand, within Psyr_4678at 5545.984 kb on - strand, within Psyr_4678at 5545.984 kb on - strand, within Psyr_4678at 5545.984 kb on - strand, within Psyr_4678at 5545.984 kb on - strand, within Psyr_4678at 5545.984 kb on - strand, within Psyr_4678at 5545.984 kb on - strand, within Psyr_4678at 5545.984 kb on - strand, within Psyr_4678at 5545.984 kb on - strand, within Psyr_4678at 5545.984 kb on - strand, within Psyr_4678at 5545.984 kb on - strand, within Psyr_4678at 5545.984 kb on - strand, within Psyr_4678at 5546.034 kb on + strand, within Psyr_4678at 5546.034 kb on + strand, within Psyr_4678at 5546.034 kb on + strand, within Psyr_4678at 5546.035 kb on - strand, within Psyr_4678at 5546.035 kb on - strand, within Psyr_4678at 5546.062 kb on + strandat 5546.062 kb on + strandat 5546.062 kb on + strandat 5546.062 kb on + strandat 5546.063 kb on - strandat 5546.108 kb on + strandat 5546.108 kb on + strandat 5546.108 kb on + strandat 5546.108 kb on + strandat 5546.108 kb on + strandat 5546.109 kb on - strandat 5546.109 kb on - strandat 5546.109 kb on - strandat 5546.109 kb on - strandat 5546.113 kb on - strandat 5546.113 kb on - strandat 5546.113 kb on - strandat 5546.200 kb on - strandat 5546.235 kb on - strandat 5546.325 kb on - strandat 5546.348 kb on - strandat 5546.348 kb on - strandat 5546.348 kb on - strandat 5546.374 kb on + strandat 5546.374 kb on + strandat 5546.375 kb on - strandat 5546.375 kb on - strandat 5546.404 kb on + strandat 5546.404 kb on + strandat 5546.404 kb on + strandat 5546.405 kb on - strandat 5546.405 kb on - strandat 5546.423 kb on + strandat 5546.423 kb on + strandat 5546.423 kb on + strandat 5546.424 kb on - strandat 5546.424 kb on - strandat 5546.424 kb on - strandat 5546.424 kb on - strandat 5546.424 kb on - strandat 5546.506 kb on + strandat 5546.653 kb on + strandat 5546.653 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours
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5,544,257 + Psyr_4677 0.74 -0.4
5,544,257 + Psyr_4677 0.74 -0.6
5,544,257 + Psyr_4677 0.74 +0.4
5,544,257 + +0.1
5,544,257 + Psyr_4677 0.74 +1.1
5,544,257 + Psyr_4677 0.74 -1.4
5,544,257 + Psyr_4677 0.74 -0.5
5,544,257 + Psyr_4677 0.74 -0.4
5,544,257 + Psyr_4677 0.74 +5.3
5,544,257 + Psyr_4677 0.74 +0.1
5,544,257 + Psyr_4677 0.74 +0.5
5,544,257 + Psyr_4677 0.74 -0.1
5,544,258 - Psyr_4677 0.74 -0.3
5,544,258 - Psyr_4677 0.74 +0.5
5,544,258 - Psyr_4677 0.74 -0.6
5,544,261 + Psyr_4677 0.74 -1.4
5,544,261 + Psyr_4677 0.74 -0.7
5,544,261 + Psyr_4677 0.74 +0.8
5,544,261 + Psyr_4677 0.74 -0.7
5,544,261 + Psyr_4677 0.74 +2.3
5,544,261 + Psyr_4677 0.74 +0.3
5,544,261 + Psyr_4677 0.74 +0.8
5,544,262 - Psyr_4677 0.74 -0.3
5,544,262 - Psyr_4677 0.74 -1.2
5,544,262 - Psyr_4677 0.74 -1.7
5,544,262 - Psyr_4677 0.74 -0.8
5,544,262 - Psyr_4677 0.74 +0.2
5,544,439 + Psyr_4677 0.84 +0.3
5,544,440 - Psyr_4677 0.84 -1.4
5,544,464 + Psyr_4677 0.85 -0.5
5,544,465 - Psyr_4677 0.85 +0.9
5,544,471 + Psyr_4677 0.86 -0.6
5,544,471 + Psyr_4677 0.86 -1.9
5,544,471 + Psyr_4677 0.86 +0.1
5,544,472 - Psyr_4677 0.86 -0.3
5,544,472 - Psyr_4677 0.86 -2.5
5,544,472 - Psyr_4677 0.86 -0.3
5,544,472 - Psyr_4677 0.86 -0.8
5,544,473 + Psyr_4677 0.86 +1.5
5,544,473 + Psyr_4677 0.86 -1.3
5,544,473 + Psyr_4677 0.86 +1.5
5,544,473 + Psyr_4677 0.86 -2.0
5,544,474 - Psyr_4677 0.86 +1.1
5,544,580 - +2.6
5,544,711 + +2.3
5,544,711 + -1.9
5,544,713 + -0.9
5,544,713 + -0.8
5,544,713 + -1.2
5,544,713 + +0.3
5,544,713 + -1.4
5,544,714 - -0.2
5,544,857 + +0.7
5,544,880 + -1.8
5,544,881 - -2.3
5,544,881 - -0.1
5,544,984 + -0.6
5,544,984 + +0.2
5,544,984 + -1.5
5,544,984 + +0.4
5,544,984 + -2.6
5,544,984 + -1.6
5,544,984 + -1.9
5,544,984 + -1.6
5,544,985 - +2.2
5,544,985 - -3.0
5,544,985 - -3.9
5,545,161 + Psyr_4678 0.21 -1.4
5,545,161 + Psyr_4678 0.21 +0.2
5,545,392 + Psyr_4678 0.38 -0.8
5,545,392 + Psyr_4678 0.38 -1.6
5,545,392 + Psyr_4678 0.38 -3.8
5,545,392 + Psyr_4678 0.38 +1.0
5,545,392 + Psyr_4678 0.38 -2.5
5,545,392 + Psyr_4678 0.38 -3.2
5,545,392 + Psyr_4678 0.38 -2.9
5,545,392 + Psyr_4678 0.38 -1.0
5,545,392 + Psyr_4678 0.38 -1.3
5,545,392 + Psyr_4678 0.38 -0.9
5,545,392 + Psyr_4678 0.38 -1.8
5,545,392 + Psyr_4678 0.38 -2.2
5,545,393 - Psyr_4678 0.38 -1.4
5,545,393 - Psyr_4678 0.38 -0.7
5,545,393 - Psyr_4678 0.38 -2.1
5,545,393 - Psyr_4678 0.38 -1.3
5,545,393 - Psyr_4678 0.38 -0.3
5,545,393 - Psyr_4678 0.38 -0.6
5,545,393 - Psyr_4678 0.38 -2.3
5,545,393 - Psyr_4678 0.38 -0.6
5,545,393 - Psyr_4678 0.38 +0.7
5,545,393 - Psyr_4678 0.38 -2.4
5,545,393 - Psyr_4678 0.38 -2.8
5,545,393 - Psyr_4678 0.38 -2.6
5,545,393 - Psyr_4678 0.38 -1.3
5,545,393 - Psyr_4678 0.38 -3.3
5,545,393 - Psyr_4678 0.38 -2.6
5,545,393 - Psyr_4678 0.38 +0.6
5,545,393 - Psyr_4678 0.38 -0.6
5,545,393 - Psyr_4678 0.38 -0.4
5,545,477 - Psyr_4678 0.45 -2.6
5,545,477 - Psyr_4678 0.45 -2.1
5,545,674 + Psyr_4678 0.60 -1.4
5,545,675 - Psyr_4678 0.60 -0.6
5,545,860 + Psyr_4678 0.74 +0.1
5,545,945 - Psyr_4678 0.81 -1.6
5,545,945 - Psyr_4678 0.81 -2.2
5,545,972 - Psyr_4678 0.83 -1.0
5,545,974 + Psyr_4678 0.83 -2.9
5,545,975 - Psyr_4678 0.83 -1.2
5,545,983 + Psyr_4678 0.84 -1.0
5,545,983 + Psyr_4678 0.84 -1.9
5,545,983 + Psyr_4678 0.84 -1.9
5,545,983 + Psyr_4678 0.84 +0.4
5,545,983 + Psyr_4678 0.84 -0.3
5,545,983 + Psyr_4678 0.84 -1.1
5,545,983 + Psyr_4678 0.84 +2.1
5,545,983 + Psyr_4678 0.84 -1.9
5,545,983 + Psyr_4678 0.84 -1.9
5,545,983 + Psyr_4678 0.84 -0.7
5,545,983 + Psyr_4678 0.84 -2.2
5,545,983 + Psyr_4678 0.84 -1.9
5,545,983 + Psyr_4678 0.84 +1.2
5,545,983 + Psyr_4678 0.84 -2.8
5,545,983 + Psyr_4678 0.84 +0.5
5,545,983 + Psyr_4678 0.84 -2.9
5,545,983 + Psyr_4678 0.84 -1.3
5,545,984 - Psyr_4678 0.84 -2.2
5,545,984 - Psyr_4678 0.84 -2.2
5,545,984 - Psyr_4678 0.84 -3.1
5,545,984 - Psyr_4678 0.84 -1.8
5,545,984 - Psyr_4678 0.84 -0.3
5,545,984 - Psyr_4678 0.84 -2.1
5,545,984 - Psyr_4678 0.84 -1.8
5,545,984 - Psyr_4678 0.84 -2.1
5,545,984 - Psyr_4678 0.84 -1.2
5,545,984 - Psyr_4678 0.84 -0.7
5,545,984 - Psyr_4678 0.84 -1.6
5,546,034 + Psyr_4678 0.88 -1.4
5,546,034 + Psyr_4678 0.88 +2.0
5,546,034 + Psyr_4678 0.88 -0.1
5,546,035 - Psyr_4678 0.88 -3.1
5,546,035 - Psyr_4678 0.88 +1.3
5,546,062 + -0.5
5,546,062 + -1.6
5,546,062 + -0.3
5,546,062 + -0.6
5,546,063 - -3.3
5,546,108 + -2.5
5,546,108 + -1.3
5,546,108 + -1.4
5,546,108 + -1.8
5,546,108 + -1.5
5,546,109 - -1.6
5,546,109 - +0.4
5,546,109 - -3.4
5,546,109 - +0.7
5,546,113 - +0.2
5,546,113 - -2.1
5,546,113 - +1.2
5,546,200 - -3.9
5,546,235 - +2.3
5,546,325 - +2.2
5,546,348 - +2.3
5,546,348 - +1.1
5,546,348 - +1.0
5,546,374 + -1.4
5,546,374 + +0.2
5,546,375 - +2.9
5,546,375 - +0.1
5,546,404 + -0.6
5,546,404 + +1.8
5,546,404 + -1.2
5,546,405 - +1.5
5,546,405 - -0.8
5,546,423 + -0.9
5,546,423 + +1.9
5,546,423 + -1.9
5,546,424 - -0.9
5,546,424 - +1.5
5,546,424 - +0.8
5,546,424 - +0.4
5,546,424 - +1.8
5,546,506 + +0.0
5,546,653 + +1.2
5,546,653 + +0.4

Or see this region's nucleotide sequence