Experiment: library passed through aphids in food, 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4677 and Psyr_4678 are separated by 169 nucleotides Psyr_4678 and Psyr_4679 are separated by 609 nucleotides
Psyr_4677: Psyr_4677 - Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region, at 5,542,945 to 5,544,723
_4677
Psyr_4678: Psyr_4678 - GGDEF domain protein, at 5,544,893 to 5,546,191
_4678
Psyr_4679: Psyr_4679 - ISPsy9, transposase OrfA, at 5,546,801 to 5,547,340
_4679
Position (kb)
5544
5545
5546
5547 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 5544.257 kb on + strand, within Psyr_4677 at 5544.257 kb on + strand, within Psyr_4677 at 5544.257 kb on + strand, within Psyr_4677 at 5544.257 kb on + strand at 5544.257 kb on + strand, within Psyr_4677 at 5544.257 kb on + strand, within Psyr_4677 at 5544.257 kb on + strand, within Psyr_4677 at 5544.257 kb on + strand, within Psyr_4677 at 5544.257 kb on + strand, within Psyr_4677 at 5544.257 kb on + strand, within Psyr_4677 at 5544.257 kb on + strand, within Psyr_4677 at 5544.257 kb on + strand, within Psyr_4677 at 5544.258 kb on - strand, within Psyr_4677 at 5544.258 kb on - strand, within Psyr_4677 at 5544.258 kb on - strand, within Psyr_4677 at 5544.261 kb on + strand, within Psyr_4677 at 5544.261 kb on + strand, within Psyr_4677 at 5544.261 kb on + strand, within Psyr_4677 at 5544.261 kb on + strand, within Psyr_4677 at 5544.261 kb on + strand, within Psyr_4677 at 5544.261 kb on + strand, within Psyr_4677 at 5544.261 kb on + strand, within Psyr_4677 at 5544.262 kb on - strand, within Psyr_4677 at 5544.262 kb on - strand, within Psyr_4677 at 5544.262 kb on - strand, within Psyr_4677 at 5544.262 kb on - strand, within Psyr_4677 at 5544.262 kb on - strand, within Psyr_4677 at 5544.439 kb on + strand, within Psyr_4677 at 5544.440 kb on - strand, within Psyr_4677 at 5544.464 kb on + strand, within Psyr_4677 at 5544.465 kb on - strand, within Psyr_4677 at 5544.471 kb on + strand, within Psyr_4677 at 5544.471 kb on + strand, within Psyr_4677 at 5544.471 kb on + strand, within Psyr_4677 at 5544.472 kb on - strand, within Psyr_4677 at 5544.472 kb on - strand, within Psyr_4677 at 5544.472 kb on - strand, within Psyr_4677 at 5544.472 kb on - strand, within Psyr_4677 at 5544.473 kb on + strand, within Psyr_4677 at 5544.473 kb on + strand, within Psyr_4677 at 5544.473 kb on + strand, within Psyr_4677 at 5544.473 kb on + strand, within Psyr_4677 at 5544.474 kb on - strand, within Psyr_4677 at 5544.580 kb on - strand at 5544.711 kb on + strand at 5544.711 kb on + strand at 5544.713 kb on + strand at 5544.713 kb on + strand at 5544.713 kb on + strand at 5544.713 kb on + strand at 5544.713 kb on + strand at 5544.714 kb on - strand at 5544.857 kb on + strand at 5544.880 kb on + strand at 5544.881 kb on - strand at 5544.881 kb on - strand at 5544.984 kb on + strand at 5544.984 kb on + strand at 5544.984 kb on + strand at 5544.984 kb on + strand at 5544.984 kb on + strand at 5544.984 kb on + strand at 5544.984 kb on + strand at 5544.984 kb on + strand at 5544.985 kb on - strand at 5544.985 kb on - strand at 5544.985 kb on - strand at 5545.161 kb on + strand, within Psyr_4678 at 5545.161 kb on + strand, within Psyr_4678 at 5545.392 kb on + strand, within Psyr_4678 at 5545.392 kb on + strand, within Psyr_4678 at 5545.392 kb on + strand, within Psyr_4678 at 5545.392 kb on + strand, within Psyr_4678 at 5545.392 kb on + strand, within Psyr_4678 at 5545.392 kb on + strand, within Psyr_4678 at 5545.392 kb on + strand, within Psyr_4678 at 5545.392 kb on + strand, within Psyr_4678 at 5545.392 kb on + strand, within Psyr_4678 at 5545.392 kb on + strand, within Psyr_4678 at 5545.392 kb on + strand, within Psyr_4678 at 5545.392 kb on + strand, within Psyr_4678 at 5545.393 kb on - strand, within Psyr_4678 at 5545.393 kb on - strand, within Psyr_4678 at 5545.393 kb on - strand, within Psyr_4678 at 5545.393 kb on - strand, within Psyr_4678 at 5545.393 kb on - strand, within Psyr_4678 at 5545.393 kb on - strand, within Psyr_4678 at 5545.393 kb on - strand, within Psyr_4678 at 5545.393 kb on - strand, within Psyr_4678 at 5545.393 kb on - strand, within Psyr_4678 at 5545.393 kb on - strand, within Psyr_4678 at 5545.393 kb on - strand, within Psyr_4678 at 5545.393 kb on - strand, within Psyr_4678 at 5545.393 kb on - strand, within Psyr_4678 at 5545.393 kb on - strand, within Psyr_4678 at 5545.393 kb on - strand, within Psyr_4678 at 5545.393 kb on - strand, within Psyr_4678 at 5545.393 kb on - strand, within Psyr_4678 at 5545.393 kb on - strand, within Psyr_4678 at 5545.477 kb on - strand, within Psyr_4678 at 5545.477 kb on - strand, within Psyr_4678 at 5545.674 kb on + strand, within Psyr_4678 at 5545.675 kb on - strand, within Psyr_4678 at 5545.860 kb on + strand, within Psyr_4678 at 5545.945 kb on - strand, within Psyr_4678 at 5545.945 kb on - strand, within Psyr_4678 at 5545.972 kb on - strand, within Psyr_4678 at 5545.974 kb on + strand, within Psyr_4678 at 5545.975 kb on - strand, within Psyr_4678 at 5545.983 kb on + strand, within Psyr_4678 at 5545.983 kb on + strand, within Psyr_4678 at 5545.983 kb on + strand, within Psyr_4678 at 5545.983 kb on + strand, within Psyr_4678 at 5545.983 kb on + strand, within Psyr_4678 at 5545.983 kb on + strand, within Psyr_4678 at 5545.983 kb on + strand, within Psyr_4678 at 5545.983 kb on + strand, within Psyr_4678 at 5545.983 kb on + strand, within Psyr_4678 at 5545.983 kb on + strand, within Psyr_4678 at 5545.983 kb on + strand, within Psyr_4678 at 5545.983 kb on + strand, within Psyr_4678 at 5545.983 kb on + strand, within Psyr_4678 at 5545.983 kb on + strand, within Psyr_4678 at 5545.983 kb on + strand, within Psyr_4678 at 5545.983 kb on + strand, within Psyr_4678 at 5545.983 kb on + strand, within Psyr_4678 at 5545.984 kb on - strand, within Psyr_4678 at 5545.984 kb on - strand, within Psyr_4678 at 5545.984 kb on - strand, within Psyr_4678 at 5545.984 kb on - strand, within Psyr_4678 at 5545.984 kb on - strand, within Psyr_4678 at 5545.984 kb on - strand, within Psyr_4678 at 5545.984 kb on - strand, within Psyr_4678 at 5545.984 kb on - strand, within Psyr_4678 at 5545.984 kb on - strand, within Psyr_4678 at 5545.984 kb on - strand, within Psyr_4678 at 5545.984 kb on - strand, within Psyr_4678 at 5546.034 kb on + strand, within Psyr_4678 at 5546.034 kb on + strand, within Psyr_4678 at 5546.034 kb on + strand, within Psyr_4678 at 5546.035 kb on - strand, within Psyr_4678 at 5546.035 kb on - strand, within Psyr_4678 at 5546.062 kb on + strand at 5546.062 kb on + strand at 5546.062 kb on + strand at 5546.062 kb on + strand at 5546.063 kb on - strand at 5546.108 kb on + strand at 5546.108 kb on + strand at 5546.108 kb on + strand at 5546.108 kb on + strand at 5546.108 kb on + strand at 5546.109 kb on - strand at 5546.109 kb on - strand at 5546.109 kb on - strand at 5546.109 kb on - strand at 5546.113 kb on - strand at 5546.113 kb on - strand at 5546.113 kb on - strand at 5546.200 kb on - strand at 5546.235 kb on - strand at 5546.325 kb on - strand at 5546.348 kb on - strand at 5546.348 kb on - strand at 5546.348 kb on - strand at 5546.374 kb on + strand at 5546.374 kb on + strand at 5546.375 kb on - strand at 5546.375 kb on - strand at 5546.404 kb on + strand at 5546.404 kb on + strand at 5546.404 kb on + strand at 5546.405 kb on - strand at 5546.405 kb on - strand at 5546.423 kb on + strand at 5546.423 kb on + strand at 5546.423 kb on + strand at 5546.424 kb on - strand at 5546.424 kb on - strand at 5546.424 kb on - strand at 5546.424 kb on - strand at 5546.424 kb on - strand at 5546.506 kb on + strand at 5546.653 kb on + strand at 5546.653 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours remove 5,544,257 + Psyr_4677 0.74 -0.4 5,544,257 + Psyr_4677 0.74 -0.6 5,544,257 + Psyr_4677 0.74 +0.4 5,544,257 + +0.1 5,544,257 + Psyr_4677 0.74 +1.1 5,544,257 + Psyr_4677 0.74 -1.4 5,544,257 + Psyr_4677 0.74 -0.5 5,544,257 + Psyr_4677 0.74 -0.4 5,544,257 + Psyr_4677 0.74 +5.3 5,544,257 + Psyr_4677 0.74 +0.1 5,544,257 + Psyr_4677 0.74 +0.5 5,544,257 + Psyr_4677 0.74 -0.1 5,544,258 - Psyr_4677 0.74 -0.3 5,544,258 - Psyr_4677 0.74 +0.5 5,544,258 - Psyr_4677 0.74 -0.6 5,544,261 + Psyr_4677 0.74 -1.4 5,544,261 + Psyr_4677 0.74 -0.7 5,544,261 + Psyr_4677 0.74 +0.8 5,544,261 + Psyr_4677 0.74 -0.7 5,544,261 + Psyr_4677 0.74 +2.3 5,544,261 + Psyr_4677 0.74 +0.3 5,544,261 + Psyr_4677 0.74 +0.8 5,544,262 - Psyr_4677 0.74 -0.3 5,544,262 - Psyr_4677 0.74 -1.2 5,544,262 - Psyr_4677 0.74 -1.7 5,544,262 - Psyr_4677 0.74 -0.8 5,544,262 - Psyr_4677 0.74 +0.2 5,544,439 + Psyr_4677 0.84 +0.3 5,544,440 - Psyr_4677 0.84 -1.4 5,544,464 + Psyr_4677 0.85 -0.5 5,544,465 - Psyr_4677 0.85 +0.9 5,544,471 + Psyr_4677 0.86 -0.6 5,544,471 + Psyr_4677 0.86 -1.9 5,544,471 + Psyr_4677 0.86 +0.1 5,544,472 - Psyr_4677 0.86 -0.3 5,544,472 - Psyr_4677 0.86 -2.5 5,544,472 - Psyr_4677 0.86 -0.3 5,544,472 - Psyr_4677 0.86 -0.8 5,544,473 + Psyr_4677 0.86 +1.5 5,544,473 + Psyr_4677 0.86 -1.3 5,544,473 + Psyr_4677 0.86 +1.5 5,544,473 + Psyr_4677 0.86 -2.0 5,544,474 - Psyr_4677 0.86 +1.1 5,544,580 - +2.6 5,544,711 + +2.3 5,544,711 + -1.9 5,544,713 + -0.9 5,544,713 + -0.8 5,544,713 + -1.2 5,544,713 + +0.3 5,544,713 + -1.4 5,544,714 - -0.2 5,544,857 + +0.7 5,544,880 + -1.8 5,544,881 - -2.3 5,544,881 - -0.1 5,544,984 + -0.6 5,544,984 + +0.2 5,544,984 + -1.5 5,544,984 + +0.4 5,544,984 + -2.6 5,544,984 + -1.6 5,544,984 + -1.9 5,544,984 + -1.6 5,544,985 - +2.2 5,544,985 - -3.0 5,544,985 - -3.9 5,545,161 + Psyr_4678 0.21 -1.4 5,545,161 + Psyr_4678 0.21 +0.2 5,545,392 + Psyr_4678 0.38 -0.8 5,545,392 + Psyr_4678 0.38 -1.6 5,545,392 + Psyr_4678 0.38 -3.8 5,545,392 + Psyr_4678 0.38 +1.0 5,545,392 + Psyr_4678 0.38 -2.5 5,545,392 + Psyr_4678 0.38 -3.2 5,545,392 + Psyr_4678 0.38 -2.9 5,545,392 + Psyr_4678 0.38 -1.0 5,545,392 + Psyr_4678 0.38 -1.3 5,545,392 + Psyr_4678 0.38 -0.9 5,545,392 + Psyr_4678 0.38 -1.8 5,545,392 + Psyr_4678 0.38 -2.2 5,545,393 - Psyr_4678 0.38 -1.4 5,545,393 - Psyr_4678 0.38 -0.7 5,545,393 - Psyr_4678 0.38 -2.1 5,545,393 - Psyr_4678 0.38 -1.3 5,545,393 - Psyr_4678 0.38 -0.3 5,545,393 - Psyr_4678 0.38 -0.6 5,545,393 - Psyr_4678 0.38 -2.3 5,545,393 - Psyr_4678 0.38 -0.6 5,545,393 - Psyr_4678 0.38 +0.7 5,545,393 - Psyr_4678 0.38 -2.4 5,545,393 - Psyr_4678 0.38 -2.8 5,545,393 - Psyr_4678 0.38 -2.6 5,545,393 - Psyr_4678 0.38 -1.3 5,545,393 - Psyr_4678 0.38 -3.3 5,545,393 - Psyr_4678 0.38 -2.6 5,545,393 - Psyr_4678 0.38 +0.6 5,545,393 - Psyr_4678 0.38 -0.6 5,545,393 - Psyr_4678 0.38 -0.4 5,545,477 - Psyr_4678 0.45 -2.6 5,545,477 - Psyr_4678 0.45 -2.1 5,545,674 + Psyr_4678 0.60 -1.4 5,545,675 - Psyr_4678 0.60 -0.6 5,545,860 + Psyr_4678 0.74 +0.1 5,545,945 - Psyr_4678 0.81 -1.6 5,545,945 - Psyr_4678 0.81 -2.2 5,545,972 - Psyr_4678 0.83 -1.0 5,545,974 + Psyr_4678 0.83 -2.9 5,545,975 - Psyr_4678 0.83 -1.2 5,545,983 + Psyr_4678 0.84 -1.0 5,545,983 + Psyr_4678 0.84 -1.9 5,545,983 + Psyr_4678 0.84 -1.9 5,545,983 + Psyr_4678 0.84 +0.4 5,545,983 + Psyr_4678 0.84 -0.3 5,545,983 + Psyr_4678 0.84 -1.1 5,545,983 + Psyr_4678 0.84 +2.1 5,545,983 + Psyr_4678 0.84 -1.9 5,545,983 + Psyr_4678 0.84 -1.9 5,545,983 + Psyr_4678 0.84 -0.7 5,545,983 + Psyr_4678 0.84 -2.2 5,545,983 + Psyr_4678 0.84 -1.9 5,545,983 + Psyr_4678 0.84 +1.2 5,545,983 + Psyr_4678 0.84 -2.8 5,545,983 + Psyr_4678 0.84 +0.5 5,545,983 + Psyr_4678 0.84 -2.9 5,545,983 + Psyr_4678 0.84 -1.3 5,545,984 - Psyr_4678 0.84 -2.2 5,545,984 - Psyr_4678 0.84 -2.2 5,545,984 - Psyr_4678 0.84 -3.1 5,545,984 - Psyr_4678 0.84 -1.8 5,545,984 - Psyr_4678 0.84 -0.3 5,545,984 - Psyr_4678 0.84 -2.1 5,545,984 - Psyr_4678 0.84 -1.8 5,545,984 - Psyr_4678 0.84 -2.1 5,545,984 - Psyr_4678 0.84 -1.2 5,545,984 - Psyr_4678 0.84 -0.7 5,545,984 - Psyr_4678 0.84 -1.6 5,546,034 + Psyr_4678 0.88 -1.4 5,546,034 + Psyr_4678 0.88 +2.0 5,546,034 + Psyr_4678 0.88 -0.1 5,546,035 - Psyr_4678 0.88 -3.1 5,546,035 - Psyr_4678 0.88 +1.3 5,546,062 + -0.5 5,546,062 + -1.6 5,546,062 + -0.3 5,546,062 + -0.6 5,546,063 - -3.3 5,546,108 + -2.5 5,546,108 + -1.3 5,546,108 + -1.4 5,546,108 + -1.8 5,546,108 + -1.5 5,546,109 - -1.6 5,546,109 - +0.4 5,546,109 - -3.4 5,546,109 - +0.7 5,546,113 - +0.2 5,546,113 - -2.1 5,546,113 - +1.2 5,546,200 - -3.9 5,546,235 - +2.3 5,546,325 - +2.2 5,546,348 - +2.3 5,546,348 - +1.1 5,546,348 - +1.0 5,546,374 + -1.4 5,546,374 + +0.2 5,546,375 - +2.9 5,546,375 - +0.1 5,546,404 + -0.6 5,546,404 + +1.8 5,546,404 + -1.2 5,546,405 - +1.5 5,546,405 - -0.8 5,546,423 + -0.9 5,546,423 + +1.9 5,546,423 + -1.9 5,546,424 - -0.9 5,546,424 - +1.5 5,546,424 - +0.8 5,546,424 - +0.4 5,546,424 - +1.8 5,546,506 + +0.0 5,546,653 + +1.2 5,546,653 + +0.4
Or see this region's nucleotide sequence