Experiment: library passed through aphids in food, 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4667 and Psyr_4668 are separated by 15 nucleotides
Psyr_4667: Psyr_4667 - Tryptophan 2-monooxygenase, at 5,531,014 to 5,532,693
_4667
Psyr_4668: Psyr_4668 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase, at 5,532,709 to 5,533,503
_4668
Position (kb)
5532
5533
5534 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 5531.980 kb on + strand, within Psyr_4667 at 5531.981 kb on - strand, within Psyr_4667 at 5532.089 kb on - strand, within Psyr_4667 at 5532.089 kb on - strand, within Psyr_4667 at 5532.208 kb on + strand, within Psyr_4667 at 5532.208 kb on + strand, within Psyr_4667 at 5532.208 kb on + strand, within Psyr_4667 at 5532.208 kb on + strand, within Psyr_4667 at 5532.208 kb on + strand, within Psyr_4667 at 5532.208 kb on + strand, within Psyr_4667 at 5532.209 kb on - strand, within Psyr_4667 at 5532.209 kb on - strand, within Psyr_4667 at 5532.209 kb on - strand, within Psyr_4667 at 5532.209 kb on - strand, within Psyr_4667 at 5532.209 kb on - strand, within Psyr_4667 at 5532.209 kb on - strand, within Psyr_4667 at 5532.209 kb on - strand, within Psyr_4667 at 5532.209 kb on - strand, within Psyr_4667 at 5532.257 kb on - strand, within Psyr_4667 at 5532.317 kb on + strand, within Psyr_4667 at 5532.317 kb on + strand, within Psyr_4667 at 5532.318 kb on - strand, within Psyr_4667 at 5532.318 kb on - strand, within Psyr_4667 at 5532.318 kb on - strand, within Psyr_4667 at 5532.343 kb on + strand, within Psyr_4667 at 5532.387 kb on + strand, within Psyr_4667 at 5532.458 kb on - strand, within Psyr_4667 at 5532.458 kb on - strand, within Psyr_4667 at 5532.472 kb on + strand, within Psyr_4667 at 5532.473 kb on - strand, within Psyr_4667 at 5532.473 kb on - strand, within Psyr_4667 at 5532.473 kb on - strand, within Psyr_4667 at 5532.473 kb on - strand, within Psyr_4667 at 5532.473 kb on - strand, within Psyr_4667 at 5532.496 kb on - strand, within Psyr_4667 at 5532.724 kb on + strand at 5532.725 kb on - strand at 5532.848 kb on - strand, within Psyr_4668 at 5532.953 kb on - strand, within Psyr_4668 at 5532.988 kb on + strand, within Psyr_4668 at 5532.988 kb on + strand, within Psyr_4668 at 5532.988 kb on + strand, within Psyr_4668 at 5532.988 kb on + strand, within Psyr_4668 at 5532.988 kb on + strand, within Psyr_4668 at 5532.988 kb on + strand, within Psyr_4668 at 5532.989 kb on - strand, within Psyr_4668 at 5532.989 kb on - strand, within Psyr_4668 at 5532.989 kb on - strand, within Psyr_4668 at 5532.989 kb on - strand, within Psyr_4668 at 5532.989 kb on - strand, within Psyr_4668 at 5532.989 kb on - strand, within Psyr_4668 at 5533.036 kb on + strand, within Psyr_4668 at 5533.037 kb on - strand, within Psyr_4668 at 5533.170 kb on + strand, within Psyr_4668 at 5533.235 kb on - strand, within Psyr_4668 at 5533.288 kb on + strand, within Psyr_4668 at 5533.288 kb on + strand, within Psyr_4668 at 5533.288 kb on + strand, within Psyr_4668 at 5533.289 kb on - strand, within Psyr_4668 at 5533.289 kb on - strand, within Psyr_4668 at 5533.298 kb on - strand, within Psyr_4668 at 5533.306 kb on + strand, within Psyr_4668 at 5533.306 kb on + strand, within Psyr_4668 at 5533.306 kb on + strand, within Psyr_4668 at 5533.306 kb on + strand, within Psyr_4668 at 5533.307 kb on - strand, within Psyr_4668 at 5533.307 kb on - strand, within Psyr_4668 at 5533.307 kb on - strand, within Psyr_4668 at 5533.307 kb on - strand, within Psyr_4668 at 5533.333 kb on + strand, within Psyr_4668 at 5533.459 kb on + strand at 5533.459 kb on + strand at 5533.460 kb on - strand at 5533.460 kb on - strand at 5533.486 kb on + strand at 5533.486 kb on + strand at 5533.487 kb on - strand at 5533.488 kb on + strand at 5533.488 kb on + strand at 5533.488 kb on + strand at 5533.488 kb on + strand at 5533.488 kb on + strand at 5533.488 kb on + strand at 5533.488 kb on + strand at 5533.489 kb on - strand at 5533.489 kb on - strand at 5533.489 kb on - strand at 5533.522 kb on + strand at 5533.523 kb on - strand at 5533.548 kb on + strand at 5533.549 kb on - strand at 5533.554 kb on + strand at 5533.554 kb on + strand at 5533.554 kb on + strand at 5533.554 kb on + strand at 5533.554 kb on + strand at 5533.554 kb on + strand at 5533.554 kb on + strand at 5533.554 kb on + strand at 5533.554 kb on + strand at 5533.555 kb on - strand at 5533.555 kb on - strand at 5533.555 kb on - strand at 5533.555 kb on - strand at 5533.556 kb on + strand at 5533.557 kb on - strand at 5533.557 kb on - strand at 5533.557 kb on - strand at 5533.557 kb on - strand at 5533.560 kb on + strand at 5533.560 kb on + strand at 5533.560 kb on + strand at 5533.560 kb on + strand at 5533.561 kb on - strand at 5533.561 kb on - strand at 5533.561 kb on - strand at 5533.590 kb on + strand at 5533.590 kb on + strand at 5533.590 kb on + strand at 5533.590 kb on + strand at 5533.590 kb on + strand at 5533.591 kb on - strand at 5533.591 kb on - strand at 5533.591 kb on - strand at 5533.839 kb on - strand at 5533.839 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours remove 5,531,980 + Psyr_4667 0.57 +0.9 5,531,981 - Psyr_4667 0.58 +4.0 5,532,089 - Psyr_4667 0.64 +0.6 5,532,089 - Psyr_4667 0.64 -0.2 5,532,208 + Psyr_4667 0.71 +1.1 5,532,208 + Psyr_4667 0.71 -0.5 5,532,208 + Psyr_4667 0.71 +0.6 5,532,208 + Psyr_4667 0.71 +0.8 5,532,208 + Psyr_4667 0.71 -0.9 5,532,208 + Psyr_4667 0.71 -1.1 5,532,209 - Psyr_4667 0.71 +0.5 5,532,209 - Psyr_4667 0.71 +0.9 5,532,209 - Psyr_4667 0.71 -0.0 5,532,209 - Psyr_4667 0.71 -0.4 5,532,209 - Psyr_4667 0.71 -0.1 5,532,209 - Psyr_4667 0.71 +0.1 5,532,209 - Psyr_4667 0.71 +0.9 5,532,209 - Psyr_4667 0.71 -2.1 5,532,257 - Psyr_4667 0.74 +1.0 5,532,317 + Psyr_4667 0.78 -0.3 5,532,317 + Psyr_4667 0.78 +0.2 5,532,318 - Psyr_4667 0.78 -1.7 5,532,318 - Psyr_4667 0.78 -1.1 5,532,318 - Psyr_4667 0.78 +0.7 5,532,343 + Psyr_4667 0.79 -1.2 5,532,387 + Psyr_4667 0.82 -0.7 5,532,458 - Psyr_4667 0.86 +1.5 5,532,458 - Psyr_4667 0.86 -1.4 5,532,472 + Psyr_4667 0.87 -2.6 5,532,473 - Psyr_4667 0.87 -0.9 5,532,473 - Psyr_4667 0.87 +2.1 5,532,473 - Psyr_4667 0.87 +1.5 5,532,473 - Psyr_4667 0.87 +0.3 5,532,473 - Psyr_4667 0.87 +1.7 5,532,496 - Psyr_4667 0.88 -0.9 5,532,724 + +0.9 5,532,725 - +1.9 5,532,848 - Psyr_4668 0.17 -1.1 5,532,953 - Psyr_4668 0.31 -1.1 5,532,988 + Psyr_4668 0.35 -0.5 5,532,988 + Psyr_4668 0.35 +0.3 5,532,988 + Psyr_4668 0.35 -0.2 5,532,988 + Psyr_4668 0.35 +0.1 5,532,988 + Psyr_4668 0.35 -0.7 5,532,988 + Psyr_4668 0.35 -0.5 5,532,989 - Psyr_4668 0.35 +0.7 5,532,989 - Psyr_4668 0.35 +0.5 5,532,989 - Psyr_4668 0.35 -0.5 5,532,989 - Psyr_4668 0.35 -0.8 5,532,989 - Psyr_4668 0.35 +0.8 5,532,989 - Psyr_4668 0.35 +0.6 5,533,036 + Psyr_4668 0.41 +0.1 5,533,037 - Psyr_4668 0.41 +1.0 5,533,170 + Psyr_4668 0.58 -0.9 5,533,235 - Psyr_4668 0.66 +2.2 5,533,288 + Psyr_4668 0.73 +0.1 5,533,288 + Psyr_4668 0.73 -3.1 5,533,288 + Psyr_4668 0.73 +0.3 5,533,289 - Psyr_4668 0.73 -1.3 5,533,289 - Psyr_4668 0.73 -2.4 5,533,298 - Psyr_4668 0.74 +1.5 5,533,306 + Psyr_4668 0.75 +0.8 5,533,306 + Psyr_4668 0.75 +0.5 5,533,306 + Psyr_4668 0.75 -0.4 5,533,306 + Psyr_4668 0.75 +1.1 5,533,307 - Psyr_4668 0.75 +0.6 5,533,307 - Psyr_4668 0.75 -0.9 5,533,307 - Psyr_4668 0.75 -0.5 5,533,307 - Psyr_4668 0.75 -1.6 5,533,333 + Psyr_4668 0.78 -1.4 5,533,459 + +0.3 5,533,459 + +2.0 5,533,460 - -1.1 5,533,460 - +1.7 5,533,486 + +0.7 5,533,486 + -0.2 5,533,487 - -1.6 5,533,488 + +0.1 5,533,488 + -0.4 5,533,488 + +5.6 5,533,488 + +0.9 5,533,488 + -1.3 5,533,488 + +1.6 5,533,488 + +0.8 5,533,489 - +1.0 5,533,489 - +0.5 5,533,489 - +0.7 5,533,522 + -0.6 5,533,523 - +1.0 5,533,548 + -1.8 5,533,549 - -1.4 5,533,554 + +0.3 5,533,554 + -0.8 5,533,554 + +0.7 5,533,554 + -0.8 5,533,554 + -0.0 5,533,554 + -0.0 5,533,554 + +1.9 5,533,554 + -0.8 5,533,554 + +0.4 5,533,555 - -1.6 5,533,555 - +0.4 5,533,555 - +1.1 5,533,555 - -1.2 5,533,556 + +1.6 5,533,557 - +1.3 5,533,557 - -0.4 5,533,557 - -0.3 5,533,557 - -0.5 5,533,560 + -0.0 5,533,560 + +1.1 5,533,560 + +1.2 5,533,560 + -0.5 5,533,561 - -1.0 5,533,561 - +0.5 5,533,561 - +0.0 5,533,590 + +1.5 5,533,590 + +0.6 5,533,590 + -0.5 5,533,590 + -0.4 5,533,590 + -2.6 5,533,591 - -0.5 5,533,591 - -0.6 5,533,591 - -0.5 5,533,839 - +1.7 5,533,839 - +0.7
Or see this region's nucleotide sequence