Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4667

Experiment: library passed through aphids in food, 72 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4665 and Psyr_4666 are separated by 10 nucleotidesPsyr_4666 and Psyr_4667 are separated by 152 nucleotidesPsyr_4667 and Psyr_4668 are separated by 15 nucleotides Psyr_4665: Psyr_4665 - membrane protein, putative, at 5,529,313 to 5,530,389 _4665 Psyr_4666: Psyr_4666 - transcriptional regulator, AsnC family, at 5,530,400 to 5,530,861 _4666 Psyr_4667: Psyr_4667 - Tryptophan 2-monooxygenase, at 5,531,014 to 5,532,693 _4667 Psyr_4668: Psyr_4668 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase, at 5,532,709 to 5,533,503 _4668 Position (kb) 5531 5532 5533Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 5530.104 kb on + strand, within Psyr_4665at 5530.387 kb on + strandat 5530.388 kb on - strandat 5530.619 kb on + strand, within Psyr_4666at 5530.619 kb on + strand, within Psyr_4666at 5530.619 kb on + strand, within Psyr_4666at 5530.619 kb on + strand, within Psyr_4666at 5530.619 kb on + strand, within Psyr_4666at 5530.619 kb on + strand, within Psyr_4666at 5530.619 kb on + strand, within Psyr_4666at 5530.619 kb on + strand, within Psyr_4666at 5530.619 kb on + strand, within Psyr_4666at 5530.620 kb on - strand, within Psyr_4666at 5530.620 kb on - strand, within Psyr_4666at 5530.620 kb on - strand, within Psyr_4666at 5530.620 kb on - strand, within Psyr_4666at 5530.620 kb on - strand, within Psyr_4666at 5530.620 kb on - strand, within Psyr_4666at 5530.620 kb on - strand, within Psyr_4666at 5530.620 kb on - strand, within Psyr_4666at 5530.620 kb on - strand, within Psyr_4666at 5530.620 kb on - strand, within Psyr_4666at 5530.620 kb on - strand, within Psyr_4666at 5530.724 kb on + strand, within Psyr_4666at 5530.725 kb on - strand, within Psyr_4666at 5530.725 kb on - strand, within Psyr_4666at 5530.725 kb on - strand, within Psyr_4666at 5530.725 kb on - strand, within Psyr_4666at 5530.725 kb on - strand, within Psyr_4666at 5530.725 kb on - strand, within Psyr_4666at 5530.725 kb on - strand, within Psyr_4666at 5530.770 kb on + strand, within Psyr_4666at 5530.873 kb on + strandat 5530.873 kb on + strandat 5530.873 kb on + strandat 5530.874 kb on - strandat 5530.874 kb on - strandat 5530.952 kb on + strandat 5530.952 kb on + strandat 5530.952 kb on + strandat 5530.955 kb on + strandat 5530.975 kb on - strandat 5531.161 kb on - strandat 5531.194 kb on + strand, within Psyr_4667at 5531.230 kb on + strand, within Psyr_4667at 5531.230 kb on + strand, within Psyr_4667at 5531.231 kb on - strand, within Psyr_4667at 5531.231 kb on - strand, within Psyr_4667at 5531.347 kb on + strand, within Psyr_4667at 5531.347 kb on + strand, within Psyr_4667at 5531.347 kb on + strand, within Psyr_4667at 5531.348 kb on - strand, within Psyr_4667at 5531.348 kb on - strand, within Psyr_4667at 5531.348 kb on - strand, within Psyr_4667at 5531.348 kb on - strand, within Psyr_4667at 5531.440 kb on + strand, within Psyr_4667at 5531.440 kb on + strand, within Psyr_4667at 5531.440 kb on + strand, within Psyr_4667at 5531.440 kb on + strand, within Psyr_4667at 5531.440 kb on + strand, within Psyr_4667at 5531.440 kb on + strand, within Psyr_4667at 5531.440 kb on + strand, within Psyr_4667at 5531.441 kb on - strand, within Psyr_4667at 5531.441 kb on - strand, within Psyr_4667at 5531.441 kb on - strand, within Psyr_4667at 5531.441 kb on - strand, within Psyr_4667at 5531.441 kb on - strand, within Psyr_4667at 5531.441 kb on - strand, within Psyr_4667at 5531.441 kb on - strand, within Psyr_4667at 5531.443 kb on + strand, within Psyr_4667at 5531.444 kb on - strand, within Psyr_4667at 5531.623 kb on + strand, within Psyr_4667at 5531.623 kb on + strand, within Psyr_4667at 5531.623 kb on + strand, within Psyr_4667at 5531.624 kb on - strand, within Psyr_4667at 5531.682 kb on - strand, within Psyr_4667at 5531.682 kb on - strand, within Psyr_4667at 5531.682 kb on - strand, within Psyr_4667at 5531.980 kb on + strand, within Psyr_4667at 5531.981 kb on - strand, within Psyr_4667at 5532.089 kb on - strand, within Psyr_4667at 5532.089 kb on - strand, within Psyr_4667at 5532.208 kb on + strand, within Psyr_4667at 5532.208 kb on + strand, within Psyr_4667at 5532.208 kb on + strand, within Psyr_4667at 5532.208 kb on + strand, within Psyr_4667at 5532.208 kb on + strand, within Psyr_4667at 5532.208 kb on + strand, within Psyr_4667at 5532.209 kb on - strand, within Psyr_4667at 5532.209 kb on - strand, within Psyr_4667at 5532.209 kb on - strand, within Psyr_4667at 5532.209 kb on - strand, within Psyr_4667at 5532.209 kb on - strand, within Psyr_4667at 5532.209 kb on - strand, within Psyr_4667at 5532.209 kb on - strand, within Psyr_4667at 5532.209 kb on - strand, within Psyr_4667at 5532.257 kb on - strand, within Psyr_4667at 5532.317 kb on + strand, within Psyr_4667at 5532.317 kb on + strand, within Psyr_4667at 5532.318 kb on - strand, within Psyr_4667at 5532.318 kb on - strand, within Psyr_4667at 5532.318 kb on - strand, within Psyr_4667at 5532.343 kb on + strand, within Psyr_4667at 5532.387 kb on + strand, within Psyr_4667at 5532.458 kb on - strand, within Psyr_4667at 5532.458 kb on - strand, within Psyr_4667at 5532.472 kb on + strand, within Psyr_4667at 5532.473 kb on - strand, within Psyr_4667at 5532.473 kb on - strand, within Psyr_4667at 5532.473 kb on - strand, within Psyr_4667at 5532.473 kb on - strand, within Psyr_4667at 5532.473 kb on - strand, within Psyr_4667at 5532.496 kb on - strand, within Psyr_4667at 5532.724 kb on + strandat 5532.725 kb on - strandat 5532.848 kb on - strand, within Psyr_4668at 5532.953 kb on - strand, within Psyr_4668at 5532.988 kb on + strand, within Psyr_4668at 5532.988 kb on + strand, within Psyr_4668at 5532.988 kb on + strand, within Psyr_4668at 5532.988 kb on + strand, within Psyr_4668at 5532.988 kb on + strand, within Psyr_4668at 5532.988 kb on + strand, within Psyr_4668at 5532.989 kb on - strand, within Psyr_4668at 5532.989 kb on - strand, within Psyr_4668at 5532.989 kb on - strand, within Psyr_4668at 5532.989 kb on - strand, within Psyr_4668at 5532.989 kb on - strand, within Psyr_4668at 5532.989 kb on - strand, within Psyr_4668at 5533.036 kb on + strand, within Psyr_4668at 5533.037 kb on - strand, within Psyr_4668at 5533.170 kb on + strand, within Psyr_4668at 5533.235 kb on - strand, within Psyr_4668at 5533.288 kb on + strand, within Psyr_4668at 5533.288 kb on + strand, within Psyr_4668at 5533.288 kb on + strand, within Psyr_4668at 5533.289 kb on - strand, within Psyr_4668at 5533.289 kb on - strand, within Psyr_4668at 5533.298 kb on - strand, within Psyr_4668at 5533.306 kb on + strand, within Psyr_4668at 5533.306 kb on + strand, within Psyr_4668at 5533.306 kb on + strand, within Psyr_4668at 5533.306 kb on + strand, within Psyr_4668at 5533.307 kb on - strand, within Psyr_4668at 5533.307 kb on - strand, within Psyr_4668at 5533.307 kb on - strand, within Psyr_4668at 5533.307 kb on - strand, within Psyr_4668at 5533.333 kb on + strand, within Psyr_4668at 5533.459 kb on + strandat 5533.459 kb on + strandat 5533.460 kb on - strandat 5533.460 kb on - strandat 5533.486 kb on + strandat 5533.486 kb on + strandat 5533.487 kb on - strandat 5533.488 kb on + strandat 5533.488 kb on + strandat 5533.488 kb on + strandat 5533.488 kb on + strandat 5533.488 kb on + strandat 5533.488 kb on + strandat 5533.488 kb on + strandat 5533.489 kb on - strandat 5533.489 kb on - strandat 5533.489 kb on - strandat 5533.522 kb on + strandat 5533.523 kb on - strandat 5533.548 kb on + strandat 5533.549 kb on - strandat 5533.554 kb on + strandat 5533.554 kb on + strandat 5533.554 kb on + strandat 5533.554 kb on + strandat 5533.554 kb on + strandat 5533.554 kb on + strandat 5533.554 kb on + strandat 5533.554 kb on + strandat 5533.554 kb on + strandat 5533.555 kb on - strandat 5533.555 kb on - strandat 5533.555 kb on - strandat 5533.555 kb on - strandat 5533.556 kb on + strandat 5533.557 kb on - strandat 5533.557 kb on - strandat 5533.557 kb on - strandat 5533.557 kb on - strandat 5533.560 kb on + strandat 5533.560 kb on + strandat 5533.560 kb on + strandat 5533.560 kb on + strandat 5533.561 kb on - strandat 5533.561 kb on - strandat 5533.561 kb on - strandat 5533.590 kb on + strandat 5533.590 kb on + strandat 5533.590 kb on + strandat 5533.590 kb on + strandat 5533.590 kb on + strandat 5533.591 kb on - strandat 5533.591 kb on - strandat 5533.591 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours
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5,530,104 + Psyr_4665 0.73 -0.3
5,530,387 + +0.2
5,530,388 - -0.0
5,530,619 + Psyr_4666 0.47 -0.8
5,530,619 + Psyr_4666 0.47 +0.3
5,530,619 + Psyr_4666 0.47 -1.6
5,530,619 + Psyr_4666 0.47 +1.0
5,530,619 + Psyr_4666 0.47 -1.4
5,530,619 + Psyr_4666 0.47 +0.4
5,530,619 + Psyr_4666 0.47 +0.0
5,530,619 + Psyr_4666 0.47 -1.4
5,530,619 + Psyr_4666 0.47 -2.3
5,530,620 - Psyr_4666 0.48 +0.0
5,530,620 - Psyr_4666 0.48 +0.1
5,530,620 - Psyr_4666 0.48 -0.5
5,530,620 - Psyr_4666 0.48 -2.2
5,530,620 - Psyr_4666 0.48 -1.9
5,530,620 - Psyr_4666 0.48 -0.2
5,530,620 - Psyr_4666 0.48 +1.3
5,530,620 - Psyr_4666 0.48 -0.7
5,530,620 - Psyr_4666 0.48 -0.7
5,530,620 - Psyr_4666 0.48 +1.1
5,530,620 - Psyr_4666 0.48 -1.9
5,530,724 + Psyr_4666 0.70 -0.4
5,530,725 - Psyr_4666 0.70 +0.2
5,530,725 - Psyr_4666 0.70 +0.4
5,530,725 - Psyr_4666 0.70 +2.3
5,530,725 - Psyr_4666 0.70 +1.1
5,530,725 - Psyr_4666 0.70 +0.6
5,530,725 - Psyr_4666 0.70 +0.6
5,530,725 - Psyr_4666 0.70 +0.5
5,530,770 + Psyr_4666 0.80 -1.4
5,530,873 + -1.1
5,530,873 + +3.2
5,530,873 + -0.3
5,530,874 - +0.2
5,530,874 - -1.3
5,530,952 + +1.2
5,530,952 + -0.3
5,530,952 + +0.7
5,530,955 + -0.3
5,530,975 - +1.2
5,531,161 - -2.0
5,531,194 + Psyr_4667 0.11 -1.3
5,531,230 + Psyr_4667 0.13 +0.8
5,531,230 + Psyr_4667 0.13 +0.1
5,531,231 - Psyr_4667 0.13 -0.7
5,531,231 - Psyr_4667 0.13 -1.3
5,531,347 + Psyr_4667 0.20 -0.2
5,531,347 + Psyr_4667 0.20 +2.2
5,531,347 + Psyr_4667 0.20 +0.0
5,531,348 - Psyr_4667 0.20 +0.9
5,531,348 - Psyr_4667 0.20 +1.1
5,531,348 - Psyr_4667 0.20 +0.0
5,531,348 - Psyr_4667 0.20 -1.4
5,531,440 + Psyr_4667 0.25 +0.6
5,531,440 + Psyr_4667 0.25 +1.1
5,531,440 + Psyr_4667 0.25 -1.4
5,531,440 + Psyr_4667 0.25 -1.1
5,531,440 + Psyr_4667 0.25 +0.9
5,531,440 + Psyr_4667 0.25 -2.3
5,531,440 + Psyr_4667 0.25 +1.5
5,531,441 - Psyr_4667 0.25 -0.6
5,531,441 - Psyr_4667 0.25 +1.5
5,531,441 - Psyr_4667 0.25 -1.4
5,531,441 - Psyr_4667 0.25 -1.4
5,531,441 - Psyr_4667 0.25 -0.2
5,531,441 - Psyr_4667 0.25 -0.4
5,531,441 - Psyr_4667 0.25 -0.9
5,531,443 + Psyr_4667 0.26 -0.6
5,531,444 - Psyr_4667 0.26 -0.6
5,531,623 + Psyr_4667 0.36 +5.0
5,531,623 + Psyr_4667 0.36 -0.5
5,531,623 + Psyr_4667 0.36 +1.7
5,531,624 - Psyr_4667 0.36 -0.1
5,531,682 - Psyr_4667 0.40 -0.3
5,531,682 - Psyr_4667 0.40 +0.9
5,531,682 - Psyr_4667 0.40 -1.7
5,531,980 + Psyr_4667 0.57 +0.9
5,531,981 - Psyr_4667 0.58 +4.0
5,532,089 - Psyr_4667 0.64 +0.6
5,532,089 - Psyr_4667 0.64 -0.2
5,532,208 + Psyr_4667 0.71 +1.1
5,532,208 + Psyr_4667 0.71 -0.5
5,532,208 + Psyr_4667 0.71 +0.6
5,532,208 + Psyr_4667 0.71 +0.8
5,532,208 + Psyr_4667 0.71 -0.9
5,532,208 + Psyr_4667 0.71 -1.1
5,532,209 - Psyr_4667 0.71 +0.5
5,532,209 - Psyr_4667 0.71 +0.9
5,532,209 - Psyr_4667 0.71 -0.0
5,532,209 - Psyr_4667 0.71 -0.4
5,532,209 - Psyr_4667 0.71 -0.1
5,532,209 - Psyr_4667 0.71 +0.1
5,532,209 - Psyr_4667 0.71 +0.9
5,532,209 - Psyr_4667 0.71 -2.1
5,532,257 - Psyr_4667 0.74 +1.0
5,532,317 + Psyr_4667 0.78 -0.3
5,532,317 + Psyr_4667 0.78 +0.2
5,532,318 - Psyr_4667 0.78 -1.7
5,532,318 - Psyr_4667 0.78 -1.1
5,532,318 - Psyr_4667 0.78 +0.7
5,532,343 + Psyr_4667 0.79 -1.2
5,532,387 + Psyr_4667 0.82 -0.7
5,532,458 - Psyr_4667 0.86 +1.5
5,532,458 - Psyr_4667 0.86 -1.4
5,532,472 + Psyr_4667 0.87 -2.6
5,532,473 - Psyr_4667 0.87 -0.9
5,532,473 - Psyr_4667 0.87 +2.1
5,532,473 - Psyr_4667 0.87 +1.5
5,532,473 - Psyr_4667 0.87 +0.3
5,532,473 - Psyr_4667 0.87 +1.7
5,532,496 - Psyr_4667 0.88 -0.9
5,532,724 + +0.9
5,532,725 - +1.9
5,532,848 - Psyr_4668 0.17 -1.1
5,532,953 - Psyr_4668 0.31 -1.1
5,532,988 + Psyr_4668 0.35 -0.5
5,532,988 + Psyr_4668 0.35 +0.3
5,532,988 + Psyr_4668 0.35 -0.2
5,532,988 + Psyr_4668 0.35 +0.1
5,532,988 + Psyr_4668 0.35 -0.7
5,532,988 + Psyr_4668 0.35 -0.5
5,532,989 - Psyr_4668 0.35 +0.7
5,532,989 - Psyr_4668 0.35 +0.5
5,532,989 - Psyr_4668 0.35 -0.5
5,532,989 - Psyr_4668 0.35 -0.8
5,532,989 - Psyr_4668 0.35 +0.8
5,532,989 - Psyr_4668 0.35 +0.6
5,533,036 + Psyr_4668 0.41 +0.1
5,533,037 - Psyr_4668 0.41 +1.0
5,533,170 + Psyr_4668 0.58 -0.9
5,533,235 - Psyr_4668 0.66 +2.2
5,533,288 + Psyr_4668 0.73 +0.1
5,533,288 + Psyr_4668 0.73 -3.1
5,533,288 + Psyr_4668 0.73 +0.3
5,533,289 - Psyr_4668 0.73 -1.3
5,533,289 - Psyr_4668 0.73 -2.4
5,533,298 - Psyr_4668 0.74 +1.5
5,533,306 + Psyr_4668 0.75 +0.8
5,533,306 + Psyr_4668 0.75 +0.5
5,533,306 + Psyr_4668 0.75 -0.4
5,533,306 + Psyr_4668 0.75 +1.1
5,533,307 - Psyr_4668 0.75 +0.6
5,533,307 - Psyr_4668 0.75 -0.9
5,533,307 - Psyr_4668 0.75 -0.5
5,533,307 - Psyr_4668 0.75 -1.6
5,533,333 + Psyr_4668 0.78 -1.4
5,533,459 + +0.3
5,533,459 + +2.0
5,533,460 - -1.1
5,533,460 - +1.7
5,533,486 + +0.7
5,533,486 + -0.2
5,533,487 - -1.6
5,533,488 + +0.1
5,533,488 + -0.4
5,533,488 + +5.6
5,533,488 + +0.9
5,533,488 + -1.3
5,533,488 + +1.6
5,533,488 + +0.8
5,533,489 - +1.0
5,533,489 - +0.5
5,533,489 - +0.7
5,533,522 + -0.6
5,533,523 - +1.0
5,533,548 + -1.8
5,533,549 - -1.4
5,533,554 + +0.3
5,533,554 + -0.8
5,533,554 + +0.7
5,533,554 + -0.8
5,533,554 + -0.0
5,533,554 + -0.0
5,533,554 + +1.9
5,533,554 + -0.8
5,533,554 + +0.4
5,533,555 - -1.6
5,533,555 - +0.4
5,533,555 - +1.1
5,533,555 - -1.2
5,533,556 + +1.6
5,533,557 - +1.3
5,533,557 - -0.4
5,533,557 - -0.3
5,533,557 - -0.5
5,533,560 + -0.0
5,533,560 + +1.1
5,533,560 + +1.2
5,533,560 + -0.5
5,533,561 - -1.0
5,533,561 - +0.5
5,533,561 - +0.0
5,533,590 + +1.5
5,533,590 + +0.6
5,533,590 + -0.5
5,533,590 + -0.4
5,533,590 + -2.6
5,533,591 - -0.5
5,533,591 - -0.6
5,533,591 - -0.5

Or see this region's nucleotide sequence