Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4493

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
5,353,111	+		Psyr_4491	0.17	-1.8
5,353,111	+		Psyr_4491	0.17	-2.1
5,353,111	+		Psyr_4491	0.17	-0.4
5,353,112	-		Psyr_4491	0.17	+0.6
5,353,530	-		Psyr_4491	0.79	-0.7
5,353,656	+				+0.8
5,353,669	+				-0.1
5,353,709	+				+1.1
5,353,709	+				-3.5
5,353,709	+				+0.0
5,353,709	+				-0.1
5,353,709	+				+1.0
5,353,709	+				-0.1
5,353,709	+				-0.2
5,353,710	-				+1.0
5,353,710	-				+0.7
5,353,710	-				-0.4
5,353,710	-				-0.7
5,353,885	-		Psyr_4492	0.71	+0.9
5,353,885	-		Psyr_4492	0.71	-2.8
5,354,007	+				-0.0
5,354,007	+				-3.2
5,354,007	+				+0.6
5,354,008	-				+0.6
5,354,008	-				-1.7
5,354,008	-				+0.5
5,354,008	-				+1.0
5,354,008	-				+1.2
5,354,008	-				+0.5
5,354,074	+				+0.3
5,354,075	-				+0.3
5,354,075	-				+0.3
5,354,075	-				+0.3
5,354,080	+				-0.1
5,354,114	+				+0.0
5,354,125	+				-0.9
5,354,125	+				-0.5
5,354,125	+				-0.2
5,354,125	+				+2.5
5,354,125	+				-1.1
5,354,125	+				+1.7
5,354,125	+				+0.1
5,354,125	+				+0.1
5,354,125	+				-0.8
5,354,125	+				-0.4
5,354,126	-				+0.3
5,354,137	+				+0.2
5,354,138	-				-0.3
5,354,138	-				+0.1
5,354,138	-				-0.9
5,354,138	-				-0.7
5,354,138	-				-1.0
5,354,174	-				+2.8
5,354,174	-				+1.2
5,354,174	-				-0.8
5,354,176	+				+0.7
5,354,177	-				-0.8
5,354,177	-				-0.2
5,354,208	+				-0.7
5,354,208	+				-0.5
5,354,208	+				-0.3
5,354,208	+				+1.2
5,354,209	-				+0.6
5,354,209	-				+0.4
5,354,209	-				-0.2
5,354,263	+				+1.1
5,354,264	-				+0.7
5,354,264	-				+0.4
5,354,264	-				+1.3
5,354,330	+				-0.3
5,354,331	-				-0.1
5,354,331	-				-1.1
5,354,332	+				+0.8
5,354,332	+				-0.7
5,354,333	-				+0.6
5,354,389	-		Psyr_4493	0.10	+1.1
5,354,443	-		Psyr_4493	0.12	-0.0
5,354,450	+		Psyr_4493	0.12	+2.0
5,354,450	+		Psyr_4493	0.12	+0.3
5,354,450	+		Psyr_4493	0.12	+0.5
5,354,450	+		Psyr_4493	0.12	+0.3
5,354,450	+		Psyr_4493	0.12	+0.2
5,354,450	+		Psyr_4493	0.12	-2.2
5,354,450	+		Psyr_4493	0.12	-1.8
5,354,451	-		Psyr_4493	0.12	+0.1
5,354,451	-		Psyr_4493	0.12	+0.8
5,354,451	-		Psyr_4493	0.12	+2.3
5,354,451	-		Psyr_4493	0.12	-0.6
5,354,451	-		Psyr_4493	0.12	-0.1
5,354,451	-		Psyr_4493	0.12	+1.7
5,354,451	-		Psyr_4493	0.12	-0.2
5,354,451	-		Psyr_4493	0.12	-1.5
5,354,451	-		Psyr_4493	0.12	+3.1
5,354,451	-		Psyr_4493	0.12	+0.3
5,354,451	-		Psyr_4493	0.12	-0.7
5,354,453	-		Psyr_4493	0.13	-0.9
5,354,453	-		Psyr_4493	0.13	+1.7
5,354,462	+		Psyr_4493	0.13	+0.6
5,354,519	+		Psyr_4493	0.15	+0.1
5,354,519	+		Psyr_4493	0.15	+0.3
5,354,520	-		Psyr_4493	0.15	+0.3
5,354,541	+		Psyr_4493	0.16	+0.3
5,354,541	+		Psyr_4493	0.16	+0.5
5,354,542	-		Psyr_4493	0.16	+1.8
5,354,542	-		Psyr_4493	0.16	+2.7
5,354,542	-		Psyr_4493	0.16	-0.2
5,354,554	+		Psyr_4493	0.16	-1.5
5,354,555	-		Psyr_4493	0.16	-3.1
5,354,582	+		Psyr_4493	0.17	-1.7
5,354,582	+		Psyr_4493	0.17	+0.2
5,354,582	+		Psyr_4493	0.17	-0.6
5,354,632	+		Psyr_4493	0.19	+2.5
5,354,633	-		Psyr_4493	0.19	+1.1
5,354,633	-		Psyr_4493	0.19	+0.3
5,354,722	+		Psyr_4493	0.22	-0.2
5,354,723	-		Psyr_4493	0.22	-1.0
5,354,778	-		Psyr_4493	0.24	+1.5
5,354,796	-		Psyr_4493	0.24	+0.4
5,354,840	-		Psyr_4493	0.26	+1.1
5,354,922	+		Psyr_4493	0.29	-0.4
5,354,961	+		Psyr_4493	0.30	+0.7
5,354,962	-		Psyr_4493	0.30	-1.2
5,354,962	-		Psyr_4493	0.30	+1.3
5,355,048	+		Psyr_4493	0.33	-1.8
5,355,050	+		Psyr_4493	0.33	-0.3
5,355,050	+		Psyr_4493	0.33	-1.5
5,355,051	-		Psyr_4493	0.33	+1.4
5,355,051	-		Psyr_4493	0.33	-0.4
5,355,051	-		Psyr_4493	0.33	+0.8
5,355,051	-		Psyr_4493	0.33	-0.0
5,355,051	-		Psyr_4493	0.33	+0.6
5,355,052	+		Psyr_4493	0.33	+0.7
5,355,052	+		Psyr_4493	0.33	-0.5
5,355,053	-		Psyr_4493	0.33	-0.1
5,355,053	-		Psyr_4493	0.33	+0.3
5,355,200	+		Psyr_4493	0.38	+0.7
5,355,200	+		Psyr_4493	0.38	+0.6
5,355,200	+		Psyr_4493	0.38	-0.3
5,355,200	+		Psyr_4493	0.38	+1.8
5,355,200	+		Psyr_4493	0.38	+0.2
5,355,200	+		Psyr_4493	0.38	+1.9
5,355,200	+		Psyr_4493	0.38	+0.9
5,355,201	-		Psyr_4493	0.38	+1.1
5,355,201	-		Psyr_4493	0.38	+0.1
5,355,232	+		Psyr_4493	0.39	-0.9
5,355,233	-		Psyr_4493	0.39	+0.2
5,355,297	-		Psyr_4493	0.41	+0.1
5,355,297	-		Psyr_4493	0.41	+0.0
5,355,297	-		Psyr_4493	0.41	+0.0
5,355,297	-		Psyr_4493	0.41	+0.7
5,355,302	+		Psyr_4493	0.42	+0.9
5,355,302	+		Psyr_4493	0.42	-1.5
5,355,302	+		Psyr_4493	0.42	+1.5
5,355,303	-		Psyr_4493	0.42	+0.9
5,355,311	+		Psyr_4493	0.42	+2.6
5,355,311	+		Psyr_4493	0.42	+0.4
5,355,312	-		Psyr_4493	0.42	-0.5
5,355,312	-		Psyr_4493	0.42	-1.1
5,355,344	+		Psyr_4493	0.43	+1.7
5,355,344	+		Psyr_4493	0.43	-1.9
5,355,345	-		Psyr_4493	0.43	+0.3
5,355,358	-		Psyr_4493	0.44	+0.3
5,355,414	+		Psyr_4493	0.45	+2.3
5,355,414	+		Psyr_4493	0.45	+0.2
5,355,414	+		Psyr_4493	0.45	+1.1
5,355,414	+		Psyr_4493	0.45	+2.3
5,355,414	+		Psyr_4493	0.45	-0.1
5,355,414	+		Psyr_4493	0.45	-0.6
5,355,414	+		Psyr_4493	0.45	-0.9
5,355,414	+		Psyr_4493	0.45	+1.1
5,355,415	-		Psyr_4493	0.45	+1.6
5,355,415	-		Psyr_4493	0.45	+0.5
5,355,415	-		Psyr_4493	0.45	+1.7
5,355,483	+		Psyr_4493	0.48	+0.3
5,355,483	+		Psyr_4493	0.48	+0.2
5,355,484	-		Psyr_4493	0.48	+1.4
5,355,502	+		Psyr_4493	0.48	-0.1
5,355,503	-		Psyr_4493	0.49	+0.9
5,355,525	+		Psyr_4493	0.49	+0.4
5,355,525	+		Psyr_4493	0.49	-0.0
5,355,525	+		Psyr_4493	0.49	+0.8
5,355,526	-		Psyr_4493	0.49	+0.6
5,355,526	-		Psyr_4493	0.49	-1.1
5,355,563	+		Psyr_4493	0.51	-0.5
5,355,563	+		Psyr_4493	0.51	-0.2
5,355,563	+		Psyr_4493	0.51	+0.1
5,355,564	-		Psyr_4493	0.51	+0.1
5,355,564	-		Psyr_4493	0.51	-0.2
5,355,564	-		Psyr_4493	0.51	-0.1
5,355,564	-		Psyr_4493	0.51	-0.2
5,355,565	+		Psyr_4493	0.51	+0.3
5,355,565	+		Psyr_4493	0.51	-0.5
5,355,565	+		Psyr_4493	0.51	-3.1
5,355,565	+		Psyr_4493	0.51	+1.2
5,355,565	+		Psyr_4493	0.51	+0.6
5,355,565	+		Psyr_4493	0.51	+1.3
5,355,565	+		Psyr_4493	0.51	-0.2
5,355,565	+		Psyr_4493	0.51	+0.6
5,355,565	+		Psyr_4493	0.51	+0.3
5,355,565	+		Psyr_4493	0.51	+2.1
5,355,565	+		Psyr_4493	0.51	+2.1
5,355,566	-		Psyr_4493	0.51	-1.1
5,355,566	-		Psyr_4493	0.51	+0.2
5,355,566	-		Psyr_4493	0.51	+1.8
5,355,566	-		Psyr_4493	0.51	+2.9
5,355,566	-		Psyr_4493	0.51	+1.1
5,355,566	-		Psyr_4493	0.51	+0.8
5,355,566	-		Psyr_4493	0.51	-1.6
5,355,566	-		Psyr_4493	0.51	+3.2
5,355,566	-		Psyr_4493	0.51	+0.4
5,355,566	-		Psyr_4493	0.51	-0.2
5,355,566	-		Psyr_4493	0.51	+0.0
5,355,566	-		Psyr_4493	0.51	-0.3
5,355,580	+		Psyr_4493	0.51	+0.9
5,355,580	+		Psyr_4493	0.51	+1.1
5,355,580	+		Psyr_4493	0.51	+0.1
5,355,581	-		Psyr_4493	0.51	-1.4
5,355,581	-		Psyr_4493	0.51	-0.5
5,355,581	-		Psyr_4493	0.51	-2.4
5,355,586	+		Psyr_4493	0.51	+0.6
5,355,594	+		Psyr_4493	0.52	-0.2
5,355,594	+		Psyr_4493	0.52	+0.4
5,355,595	-		Psyr_4493	0.52	-0.0
5,355,652	+		Psyr_4493	0.54	+1.9
5,355,679	+		Psyr_4493	0.55	-0.4
5,355,840	-		Psyr_4493	0.60	-0.1
5,355,946	+		Psyr_4493	0.64	+0.7
5,355,970	-		Psyr_4493	0.65	+0.4
5,355,970	-		Psyr_4493	0.65	-0.6
5,356,000	+		Psyr_4493	0.66	+0.4
5,356,000	+		Psyr_4493	0.66	+0.5
5,356,000	+		Psyr_4493	0.66	-0.5
5,356,000	+		Psyr_4493	0.66	+1.4
5,356,000	+		Psyr_4493	0.66	-0.3
5,356,000	+		Psyr_4493	0.66	+0.8
5,356,001	-		Psyr_4493	0.66	+0.8
5,356,001	-		Psyr_4493	0.66	-0.4
5,356,001	-		Psyr_4493	0.66	+0.1
5,356,001	-		Psyr_4493	0.66	+0.4
5,356,001	-		Psyr_4493	0.66	+1.5
5,356,001	-		Psyr_4493	0.66	+0.6
5,356,001	-		Psyr_4493	0.66	+0.1
5,356,001	-		Psyr_4493	0.66	+0.2
5,356,004	+		Psyr_4493	0.66	+0.4
5,356,004	+		Psyr_4493	0.66	+0.3
5,356,004	+		Psyr_4493	0.66	+0.0
5,356,005	-		Psyr_4493	0.66	+0.9
5,356,005	-		Psyr_4493	0.66	+0.4
5,356,005	-		Psyr_4493	0.66	+0.1
5,356,005	-		Psyr_4493	0.66	-0.7
5,356,005	-		Psyr_4493	0.66	-1.4
5,356,005	-		Psyr_4493	0.66	+0.4
5,356,005	-		Psyr_4493	0.66	+1.4
5,356,005	-		Psyr_4493	0.66	+0.6
5,356,092	-		Psyr_4493	0.69	-1.2
5,356,148	+		Psyr_4493	0.71	+0.3
5,356,200	+		Psyr_4493	0.72	+1.0
5,356,200	+		Psyr_4493	0.72	+0.5
5,356,200	+		Psyr_4493	0.72	+1.3
5,356,200	+		Psyr_4493	0.72	+0.9
5,356,200	+		Psyr_4493	0.72	+0.4
5,356,200	+		Psyr_4493	0.72	-1.0
5,356,200	+		Psyr_4493	0.72	-0.5
5,356,200	+		Psyr_4493	0.72	-0.3
5,356,200	+		Psyr_4493	0.72	+1.8
5,356,201	-		Psyr_4493	0.72	+0.7
5,356,201	-		Psyr_4493	0.72	-0.7
5,356,201	-		Psyr_4493	0.72	-0.1
5,356,201	-		Psyr_4493	0.72	-0.6
5,356,207	+		Psyr_4493	0.73	+0.2
5,356,207	+		Psyr_4493	0.73	-0.0
5,356,207	+		Psyr_4493	0.73	+0.2
5,356,207	+		Psyr_4493	0.73	+0.6
5,356,207	+		Psyr_4493	0.73	+0.6
5,356,207	+		Psyr_4493	0.73	+1.2
5,356,207	+		Psyr_4493	0.73	-1.4
5,356,207	+		Psyr_4493	0.73	-1.5
5,356,208	-		Psyr_4493	0.73	+0.8
5,356,208	-		Psyr_4493	0.73	-2.7
5,356,208	-		Psyr_4493	0.73	-0.3
5,356,208	-		Psyr_4493	0.73	+1.2
5,356,261	+		Psyr_4493	0.74	+0.2
5,356,276	+		Psyr_4493	0.75	+0.1
5,356,276	+		Psyr_4493	0.75	+0.9
5,356,276	+		Psyr_4493	0.75	-1.4
5,356,277	-		Psyr_4493	0.75	+0.8
5,356,277	-		Psyr_4493	0.75	+1.3
5,356,277	-		Psyr_4493	0.75	+0.9
5,356,318	+		Psyr_4493	0.76	+0.6
5,356,319	-		Psyr_4493	0.76	+2.0
5,356,346	+		Psyr_4493	0.77	-0.5
5,356,346	+		Psyr_4493	0.77	-0.5
5,356,347	-		Psyr_4493	0.77	+0.1
5,356,347	-		Psyr_4493	0.77	+1.9
5,356,347	-		Psyr_4493	0.77	+1.0
5,356,348	+		Psyr_4493	0.77	+1.1
5,356,358	+		Psyr_4493	0.78	+0.4
5,356,358	+		Psyr_4493	0.78	+1.9
5,356,358	+		Psyr_4493	0.78	-0.4
5,356,359	-		Psyr_4493	0.78	-0.1
5,356,359	-		Psyr_4493	0.78	-0.2
5,356,428	+		Psyr_4493	0.80	-0.4
5,356,428	+		Psyr_4493	0.80	-1.1
5,356,428	+		Psyr_4493	0.80	-1.1
5,356,428	+		Psyr_4493	0.80	+0.2
5,356,429	-		Psyr_4493	0.80	+1.3
5,356,429	-		Psyr_4493	0.80	+0.8
5,356,429	-		Psyr_4493	0.80	+1.3
5,356,481	+		Psyr_4493	0.82	+0.4
5,356,481	+		Psyr_4493	0.82	+2.6
5,356,482	-		Psyr_4493	0.82	+1.5
5,356,542	+		Psyr_4493	0.84	+2.6
5,356,542	+		Psyr_4493	0.84	+1.1
5,356,542	+		Psyr_4493	0.84	+1.3
5,356,543	-		Psyr_4493	0.84	+1.4
5,356,543	-		Psyr_4493	0.84	+0.4
5,356,594	-		Psyr_4493	0.86	+0.6
5,356,609	+		Psyr_4493	0.86	-0.5
5,356,634	+		Psyr_4493	0.87	+0.4
5,356,635	-		Psyr_4493	0.87	+0.5
5,356,730	-				-0.4
5,356,866	-				-0.6
5,356,866	-				+1.4
5,356,866	-				+0.3
5,356,877	-				+1.3
5,356,959	-				+0.7
5,357,039	-				-1.6
5,357,086	+				+1.1
5,357,086	+				+0.0
5,357,115	-				-2.6
5,357,225	+		Psyr_4494	0.22	+1.4
5,357,254	-		Psyr_4494	0.25	-3.2
5,357,322	+		Psyr_4494	0.33	+0.7
5,357,322	+		Psyr_4494	0.33	-0.4
5,357,358	-		Psyr_4494	0.38	-3.2
5,357,408	+		Psyr_4494	0.44	-0.6
5,357,408	+		Psyr_4494	0.44	-2.4
5,357,408	+		Psyr_4494	0.44	+0.6
5,357,409	-		Psyr_4494	0.44	-0.5
5,357,409	-		Psyr_4494	0.44	-1.7
5,357,409	-		Psyr_4494	0.44	-2.3
5,357,409	-		Psyr_4494	0.44	-1.3
5,357,414	+		Psyr_4494	0.44	-1.4
5,357,414	+		Psyr_4494	0.44	-0.7
5,357,414	+		Psyr_4494	0.44	-0.2
5,357,414	+		Psyr_4494	0.44	+2.0
5,357,414	+		Psyr_4494	0.44	+0.8
5,357,414	+		Psyr_4494	0.44	-2.1
5,357,414	+		Psyr_4494	0.44	+1.6
5,357,414	+		Psyr_4494	0.44	+0.6
5,357,414	+		Psyr_4494	0.44	-0.6
5,357,415	-		Psyr_4494	0.44	-1.9
5,357,415	-		Psyr_4494	0.44	-1.8
5,357,415	-		Psyr_4494	0.44	+0.5
5,357,415	-		Psyr_4494	0.44	-0.5
5,357,415	-		Psyr_4494	0.44	-0.4
5,357,415	-		Psyr_4494	0.44	-0.8
5,357,415	-		Psyr_4494	0.44	-1.2
5,357,415	-		Psyr_4494	0.44	-2.4
5,357,415	-		Psyr_4494	0.44	-1.0
5,357,415	-		Psyr_4494	0.44	-0.4
5,357,415	-		Psyr_4494	0.44	-1.1
5,357,415	-		Psyr_4494	0.44	-0.8
5,357,415	-		Psyr_4494	0.44	-2.0
5,357,453	+		Psyr_4494	0.49	-0.4
5,357,453	+		Psyr_4494	0.49	+2.0
5,357,453	+		Psyr_4494	0.49	-0.9
5,357,453	+		Psyr_4494	0.49	+1.9
5,357,454	-		Psyr_4494	0.49	-0.2
5,357,502	+		Psyr_4494	0.55	-0.2
5,357,662	+		Psyr_4494	0.73	+2.4
5,357,662	+		Psyr_4494	0.73	-0.0
5,357,663	-		Psyr_4494	0.73	-2.1
5,357,663	-		Psyr_4494	0.73	-0.5
5,357,663	-		Psyr_4494	0.73	-0.8
5,357,663	-		Psyr_4494	0.73	-1.6
5,357,731	+		Psyr_4494	0.81	+0.4
5,357,731	+		Psyr_4494	0.81	+0.1
5,357,732	-		Psyr_4494	0.82	-1.3
5,357,732	-		Psyr_4494	0.82	-0.2
5,357,732	-		Psyr_4494	0.82	-0.9
5,357,732	-		Psyr_4494	0.82	+0.4
5,357,732	-		Psyr_4494	0.82	-0.9
5,357,736	+		Psyr_4494	0.82	+0.3
5,357,736	+		Psyr_4494	0.82	+0.0
5,357,737	-		Psyr_4494	0.82	-0.2
5,357,808	-				+1.1
5,357,862	-				-0.6
5,357,862	-				-1.2
5,357,881	-				-1.6
5,357,907	+				+1.5
5,357,908	-				-1.8
5,357,908	-				-1.6
5,357,908	-				-3.4
5,357,908	-				-1.0
5,357,916	-				+1.3
5,357,943	+				+0.5
5,357,943	+				+1.0
5,357,962	+				-1.4
5,357,986	+				-0.0
5,357,990	+				+0.4
5,358,005	+				+2.4