Experiment: library passed through aphids in food, 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4480 and Psyr_4481 are separated by 10 nucleotides Psyr_4481 and Psyr_4482 are separated by 1 nucleotides Psyr_4482 and Psyr_4483 are separated by 72 nucleotides
Psyr_4480: Psyr_4480 - outer membrane transport energization protein TonB, at 5,342,109 to 5,342,918
_4480
Psyr_4481: Psyr_4481 - outer membrane transport energization protein ExbB, at 5,342,929 to 5,343,621
_4481
Psyr_4482: Psyr_4482 - outer membrane transport energization protein ExbD, at 5,343,623 to 5,344,027
_4482
Psyr_4483: Psyr_4483 - TonB-dependent receptor:TonB-dependent receptor, at 5,344,100 to 5,346,406
_4483
Position (kb) 5343
5344
5345 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5342.685 kb on + strand, within Psyr_4480 at 5342.760 kb on - strand, within Psyr_4480 at 5342.843 kb on + strand at 5342.843 kb on + strand at 5342.843 kb on + strand at 5342.843 kb on + strand at 5342.844 kb on - strand at 5342.844 kb on - strand at 5342.941 kb on + strand at 5342.942 kb on - strand at 5343.009 kb on - strand, within Psyr_4481 at 5343.009 kb on - strand, within Psyr_4481 at 5343.009 kb on - strand, within Psyr_4481 at 5343.009 kb on - strand, within Psyr_4481 at 5343.009 kb on - strand, within Psyr_4481 at 5343.062 kb on - strand, within Psyr_4481 at 5343.472 kb on + strand, within Psyr_4481 at 5343.472 kb on + strand, within Psyr_4481 at 5343.473 kb on - strand, within Psyr_4481 at 5343.473 kb on - strand, within Psyr_4481 at 5344.340 kb on + strand, within Psyr_4483 at 5344.340 kb on + strand, within Psyr_4483 at 5344.341 kb on - strand, within Psyr_4483 at 5344.341 kb on - strand, within Psyr_4483 at 5344.475 kb on + strand, within Psyr_4483 at 5344.700 kb on + strand, within Psyr_4483 at 5344.701 kb on - strand, within Psyr_4483 at 5344.742 kb on + strand, within Psyr_4483 at 5344.742 kb on + strand, within Psyr_4483 at 5344.742 kb on + strand, within Psyr_4483 at 5344.742 kb on + strand, within Psyr_4483 at 5344.742 kb on + strand, within Psyr_4483 at 5344.742 kb on + strand at 5344.760 kb on + strand, within Psyr_4483 at 5344.760 kb on + strand, within Psyr_4483 at 5344.760 kb on + strand, within Psyr_4483 at 5344.761 kb on - strand, within Psyr_4483 at 5344.761 kb on - strand, within Psyr_4483 at 5344.761 kb on - strand, within Psyr_4483 at 5344.778 kb on + strand, within Psyr_4483 at 5344.847 kb on + strand, within Psyr_4483 at 5344.847 kb on + strand, within Psyr_4483 at 5344.847 kb on + strand, within Psyr_4483 at 5344.847 kb on + strand, within Psyr_4483 at 5344.848 kb on - strand, within Psyr_4483 at 5344.848 kb on - strand, within Psyr_4483 at 5344.848 kb on - strand, within Psyr_4483 at 5344.848 kb on - strand, within Psyr_4483 at 5344.848 kb on - strand, within Psyr_4483 at 5344.848 kb on - strand, within Psyr_4483 at 5344.848 kb on - strand, within Psyr_4483 at 5344.848 kb on - strand, within Psyr_4483 at 5344.961 kb on + strand, within Psyr_4483 at 5344.961 kb on + strand, within Psyr_4483 at 5344.961 kb on + strand, within Psyr_4483 at 5344.962 kb on - strand, within Psyr_4483 at 5344.962 kb on - strand, within Psyr_4483 at 5344.962 kb on - strand, within Psyr_4483 at 5344.962 kb on - strand, within Psyr_4483 at 5344.964 kb on + strand, within Psyr_4483 at 5344.964 kb on + strand, within Psyr_4483 at 5344.964 kb on + strand, within Psyr_4483 at 5344.964 kb on + strand, within Psyr_4483 at 5344.964 kb on + strand, within Psyr_4483 at 5344.965 kb on - strand, within Psyr_4483 at 5344.965 kb on - strand, within Psyr_4483 at 5344.965 kb on - strand, within Psyr_4483 at 5344.965 kb on - strand, within Psyr_4483 at 5345.009 kb on + strand, within Psyr_4483 at 5345.009 kb on + strand, within Psyr_4483 at 5345.009 kb on + strand, within Psyr_4483 at 5345.009 kb on + strand, within Psyr_4483 at 5345.009 kb on + strand, within Psyr_4483 at 5345.009 kb on + strand, within Psyr_4483 at 5345.009 kb on + strand, within Psyr_4483 at 5345.010 kb on - strand, within Psyr_4483 at 5345.010 kb on - strand, within Psyr_4483 at 5345.010 kb on - strand, within Psyr_4483 at 5345.010 kb on - strand, within Psyr_4483 at 5345.010 kb on - strand, within Psyr_4483 at 5345.010 kb on - strand, within Psyr_4483 at 5345.012 kb on - strand, within Psyr_4483
Per-strain Table
Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours remove 5,342,685 + Psyr_4480 0.71 +1.3 5,342,760 - Psyr_4480 0.80 +0.8 5,342,843 + -0.2 5,342,843 + -0.1 5,342,843 + +2.8 5,342,843 + -0.1 5,342,844 - +1.3 5,342,844 - -1.1 5,342,941 + -0.9 5,342,942 - -0.1 5,343,009 - Psyr_4481 0.12 -0.9 5,343,009 - Psyr_4481 0.12 -0.1 5,343,009 - Psyr_4481 0.12 +1.0 5,343,009 - Psyr_4481 0.12 +1.6 5,343,009 - Psyr_4481 0.12 -0.5 5,343,062 - Psyr_4481 0.19 +0.2 5,343,472 + Psyr_4481 0.78 +1.4 5,343,472 + Psyr_4481 0.78 +0.2 5,343,473 - Psyr_4481 0.78 -0.4 5,343,473 - Psyr_4481 0.78 +1.6 5,344,340 + Psyr_4483 0.10 +2.0 5,344,340 + Psyr_4483 0.10 -0.2 5,344,341 - Psyr_4483 0.10 -0.5 5,344,341 - Psyr_4483 0.10 +0.4 5,344,475 + Psyr_4483 0.16 -0.0 5,344,700 + Psyr_4483 0.26 -1.3 5,344,701 - Psyr_4483 0.26 +1.7 5,344,742 + Psyr_4483 0.28 -1.5 5,344,742 + Psyr_4483 0.28 +1.6 5,344,742 + Psyr_4483 0.28 +0.1 5,344,742 + Psyr_4483 0.28 +1.7 5,344,742 + Psyr_4483 0.28 +3.0 5,344,742 + -0.0 5,344,760 + Psyr_4483 0.29 -1.0 5,344,760 + Psyr_4483 0.29 +1.3 5,344,760 + Psyr_4483 0.29 +0.8 5,344,761 - Psyr_4483 0.29 +0.1 5,344,761 - Psyr_4483 0.29 +1.6 5,344,761 - Psyr_4483 0.29 -0.6 5,344,778 + Psyr_4483 0.29 +1.4 5,344,847 + Psyr_4483 0.32 +0.4 5,344,847 + Psyr_4483 0.32 -0.0 5,344,847 + Psyr_4483 0.32 +1.3 5,344,847 + Psyr_4483 0.32 -0.9 5,344,848 - Psyr_4483 0.32 -0.3 5,344,848 - Psyr_4483 0.32 +0.2 5,344,848 - Psyr_4483 0.32 -0.8 5,344,848 - Psyr_4483 0.32 -2.6 5,344,848 - Psyr_4483 0.32 -0.3 5,344,848 - Psyr_4483 0.32 -1.0 5,344,848 - Psyr_4483 0.32 +0.6 5,344,848 - Psyr_4483 0.32 +0.7 5,344,961 + Psyr_4483 0.37 -0.6 5,344,961 + Psyr_4483 0.37 -0.7 5,344,961 + Psyr_4483 0.37 +0.9 5,344,962 - Psyr_4483 0.37 +0.5 5,344,962 - Psyr_4483 0.37 -0.2 5,344,962 - Psyr_4483 0.37 -0.3 5,344,962 - Psyr_4483 0.37 -0.3 5,344,964 + Psyr_4483 0.37 +0.2 5,344,964 + Psyr_4483 0.37 +0.8 5,344,964 + Psyr_4483 0.37 -1.1 5,344,964 + Psyr_4483 0.37 +0.5 5,344,964 + Psyr_4483 0.37 +1.3 5,344,965 - Psyr_4483 0.37 +0.8 5,344,965 - Psyr_4483 0.37 -1.7 5,344,965 - Psyr_4483 0.37 -0.8 5,344,965 - Psyr_4483 0.37 +0.2 5,345,009 + Psyr_4483 0.39 -1.2 5,345,009 + Psyr_4483 0.39 +0.4 5,345,009 + Psyr_4483 0.39 +0.9 5,345,009 + Psyr_4483 0.39 +0.3 5,345,009 + Psyr_4483 0.39 -0.9 5,345,009 + Psyr_4483 0.39 +1.0 5,345,009 + Psyr_4483 0.39 +0.5 5,345,010 - Psyr_4483 0.39 +0.5 5,345,010 - Psyr_4483 0.39 -0.4 5,345,010 - Psyr_4483 0.39 +0.6 5,345,010 - Psyr_4483 0.39 -1.0 5,345,010 - Psyr_4483 0.39 -0.4 5,345,010 - Psyr_4483 0.39 -0.7 5,345,012 - Psyr_4483 0.40 +0.7
Or see this region's nucleotide sequence