Experiment: library passed through aphids in food, 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4439 and Psyr_4440 are separated by 75 nucleotides Psyr_4440 and Psyr_4441 are separated by 327 nucleotides
Psyr_4439: Psyr_4439 - histidine kinase, at 5,305,442 to 5,306,572
_4439
Psyr_4440: Psyr_4440 - Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal, at 5,306,648 to 5,307,592
_4440
Psyr_4441: Psyr_4441 - heat shock protein YegD, at 5,307,920 to 5,309,185
_4441
Position (kb) 5306
5307
5308 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5305.780 kb on - strand, within Psyr_4439 at 5305.875 kb on - strand, within Psyr_4439 at 5306.012 kb on + strand, within Psyr_4439 at 5306.013 kb on - strand, within Psyr_4439 at 5306.080 kb on - strand, within Psyr_4439 at 5306.120 kb on + strand, within Psyr_4439 at 5306.120 kb on + strand, within Psyr_4439 at 5306.120 kb on + strand, within Psyr_4439 at 5306.120 kb on + strand, within Psyr_4439 at 5306.120 kb on + strand, within Psyr_4439 at 5306.121 kb on - strand, within Psyr_4439 at 5306.121 kb on - strand, within Psyr_4439 at 5306.121 kb on - strand, within Psyr_4439 at 5306.121 kb on - strand, within Psyr_4439 at 5306.121 kb on - strand, within Psyr_4439 at 5306.121 kb on - strand, within Psyr_4439 at 5306.121 kb on - strand, within Psyr_4439 at 5306.121 kb on - strand, within Psyr_4439 at 5306.121 kb on - strand, within Psyr_4439 at 5306.121 kb on - strand, within Psyr_4439 at 5306.202 kb on + strand, within Psyr_4439 at 5306.202 kb on + strand, within Psyr_4439 at 5306.202 kb on + strand, within Psyr_4439 at 5306.202 kb on + strand, within Psyr_4439 at 5306.202 kb on + strand, within Psyr_4439 at 5306.202 kb on + strand, within Psyr_4439 at 5306.202 kb on + strand, within Psyr_4439 at 5306.202 kb on + strand, within Psyr_4439 at 5306.202 kb on + strand, within Psyr_4439 at 5306.202 kb on + strand, within Psyr_4439 at 5306.203 kb on - strand, within Psyr_4439 at 5306.203 kb on - strand, within Psyr_4439 at 5306.203 kb on - strand, within Psyr_4439 at 5306.203 kb on - strand, within Psyr_4439 at 5306.203 kb on - strand, within Psyr_4439 at 5306.203 kb on - strand, within Psyr_4439 at 5306.203 kb on - strand, within Psyr_4439 at 5306.203 kb on - strand, within Psyr_4439 at 5306.203 kb on - strand, within Psyr_4439 at 5306.203 kb on - strand, within Psyr_4439 at 5306.203 kb on - strand, within Psyr_4439 at 5306.203 kb on - strand, within Psyr_4439 at 5306.203 kb on - strand, within Psyr_4439 at 5306.304 kb on + strand, within Psyr_4439 at 5306.341 kb on - strand, within Psyr_4439 at 5306.594 kb on + strand at 5306.761 kb on - strand, within Psyr_4440 at 5306.988 kb on + strand, within Psyr_4440 at 5306.989 kb on - strand, within Psyr_4440 at 5307.046 kb on + strand, within Psyr_4440 at 5307.100 kb on + strand, within Psyr_4440 at 5307.400 kb on - strand, within Psyr_4440 at 5307.400 kb on - strand, within Psyr_4440 at 5307.429 kb on - strand, within Psyr_4440 at 5307.435 kb on + strand, within Psyr_4440 at 5307.435 kb on + strand, within Psyr_4440 at 5307.435 kb on + strand, within Psyr_4440 at 5307.435 kb on + strand, within Psyr_4440 at 5307.436 kb on - strand, within Psyr_4440 at 5307.436 kb on - strand, within Psyr_4440 at 5307.498 kb on + strand at 5307.498 kb on + strand at 5307.498 kb on + strand at 5307.499 kb on - strand at 5307.499 kb on - strand at 5307.499 kb on - strand at 5307.499 kb on - strand at 5307.566 kb on + strand at 5307.566 kb on + strand at 5307.566 kb on + strand at 5307.566 kb on + strand at 5307.566 kb on + strand at 5307.566 kb on + strand at 5307.566 kb on + strand at 5307.566 kb on + strand at 5307.566 kb on + strand at 5307.566 kb on + strand at 5307.567 kb on - strand at 5307.567 kb on - strand at 5307.573 kb on + strand at 5307.573 kb on + strand at 5307.573 kb on + strand at 5307.573 kb on + strand at 5307.574 kb on - strand at 5307.574 kb on - strand at 5307.574 kb on - strand at 5307.576 kb on + strand at 5307.576 kb on + strand at 5307.577 kb on - strand at 5307.577 kb on - strand at 5307.594 kb on + strand at 5307.595 kb on - strand at 5307.631 kb on + strand at 5307.632 kb on - strand at 5307.680 kb on - strand at 5307.683 kb on + strand at 5307.684 kb on - strand at 5307.696 kb on + strand at 5307.696 kb on + strand at 5307.698 kb on + strand at 5307.699 kb on - strand at 5307.704 kb on + strand at 5307.704 kb on + strand at 5307.705 kb on - strand at 5307.733 kb on + strand at 5307.746 kb on + strand at 5307.746 kb on + strand at 5307.746 kb on + strand at 5307.746 kb on + strand at 5307.746 kb on + strand at 5307.746 kb on + strand at 5307.746 kb on + strand at 5307.746 kb on + strand at 5307.746 kb on + strand at 5307.746 kb on + strand at 5307.746 kb on + strand at 5307.746 kb on + strand at 5307.746 kb on + strand at 5307.746 kb on + strand at 5307.746 kb on + strand at 5307.747 kb on - strand at 5307.747 kb on - strand at 5307.747 kb on - strand at 5307.747 kb on - strand at 5307.747 kb on - strand at 5307.747 kb on - strand at 5307.747 kb on - strand at 5307.747 kb on - strand at 5307.779 kb on + strand at 5307.780 kb on - strand at 5307.825 kb on + strand at 5307.825 kb on + strand at 5307.826 kb on - strand at 5307.835 kb on + strand at 5307.836 kb on - strand at 5307.836 kb on - strand at 5307.836 kb on - strand at 5307.836 kb on - strand at 5307.836 kb on - strand at 5307.839 kb on + strand at 5307.839 kb on + strand at 5307.839 kb on + strand at 5307.839 kb on + strand at 5307.839 kb on + strand at 5307.839 kb on + strand at 5307.839 kb on + strand at 5307.839 kb on + strand at 5307.840 kb on - strand at 5307.840 kb on - strand at 5307.840 kb on - strand at 5307.840 kb on - strand at 5307.840 kb on - strand at 5307.840 kb on - strand at 5307.840 kb on - strand at 5307.840 kb on - strand at 5307.840 kb on - strand at 5307.840 kb on - strand at 5307.841 kb on + strand at 5307.842 kb on - strand at 5307.842 kb on - strand at 5307.842 kb on - strand at 5307.881 kb on + strand at 5307.881 kb on + strand at 5307.881 kb on + strand at 5307.881 kb on + strand at 5307.912 kb on + strand at 5307.912 kb on + strand at 5307.912 kb on + strand at 5307.913 kb on - strand at 5307.913 kb on - strand at 5307.913 kb on - strand at 5307.913 kb on - strand at 5308.037 kb on - strand at 5308.086 kb on - strand, within Psyr_4441 at 5308.086 kb on - strand, within Psyr_4441 at 5308.121 kb on + strand, within Psyr_4441 at 5308.122 kb on - strand, within Psyr_4441 at 5308.122 kb on - strand, within Psyr_4441 at 5308.122 kb on - strand, within Psyr_4441
Per-strain Table
Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours remove 5,305,780 - Psyr_4439 0.30 +1.1 5,305,875 - Psyr_4439 0.38 +1.5 5,306,012 + Psyr_4439 0.50 +1.3 5,306,013 - Psyr_4439 0.50 -0.0 5,306,080 - Psyr_4439 0.56 -2.1 5,306,120 + Psyr_4439 0.60 +0.9 5,306,120 + Psyr_4439 0.60 -1.6 5,306,120 + Psyr_4439 0.60 -1.4 5,306,120 + Psyr_4439 0.60 +1.1 5,306,120 + Psyr_4439 0.60 +0.2 5,306,121 - Psyr_4439 0.60 +4.4 5,306,121 - Psyr_4439 0.60 +0.5 5,306,121 - Psyr_4439 0.60 -1.2 5,306,121 - Psyr_4439 0.60 +1.7 5,306,121 - Psyr_4439 0.60 +0.4 5,306,121 - Psyr_4439 0.60 +0.3 5,306,121 - Psyr_4439 0.60 +1.7 5,306,121 - Psyr_4439 0.60 +0.0 5,306,121 - Psyr_4439 0.60 +2.6 5,306,121 - Psyr_4439 0.60 +0.5 5,306,202 + Psyr_4439 0.67 -2.2 5,306,202 + Psyr_4439 0.67 +0.3 5,306,202 + Psyr_4439 0.67 +1.1 5,306,202 + Psyr_4439 0.67 -1.2 5,306,202 + Psyr_4439 0.67 -0.5 5,306,202 + Psyr_4439 0.67 -1.4 5,306,202 + Psyr_4439 0.67 +3.1 5,306,202 + Psyr_4439 0.67 +2.3 5,306,202 + Psyr_4439 0.67 +1.4 5,306,202 + Psyr_4439 0.67 -0.5 5,306,203 - Psyr_4439 0.67 +0.0 5,306,203 - Psyr_4439 0.67 +0.0 5,306,203 - Psyr_4439 0.67 -1.2 5,306,203 - Psyr_4439 0.67 -0.2 5,306,203 - Psyr_4439 0.67 +0.3 5,306,203 - Psyr_4439 0.67 +1.0 5,306,203 - Psyr_4439 0.67 -0.3 5,306,203 - Psyr_4439 0.67 +2.0 5,306,203 - Psyr_4439 0.67 +0.6 5,306,203 - Psyr_4439 0.67 -1.1 5,306,203 - Psyr_4439 0.67 +0.1 5,306,203 - Psyr_4439 0.67 +1.1 5,306,203 - Psyr_4439 0.67 -0.9 5,306,304 + Psyr_4439 0.76 -2.1 5,306,341 - Psyr_4439 0.79 -1.5 5,306,594 + -0.8 5,306,761 - Psyr_4440 0.12 +0.6 5,306,988 + Psyr_4440 0.36 +0.6 5,306,989 - Psyr_4440 0.36 -0.5 5,307,046 + Psyr_4440 0.42 +0.1 5,307,100 + Psyr_4440 0.48 +2.1 5,307,400 - Psyr_4440 0.80 +3.0 5,307,400 - Psyr_4440 0.80 +0.2 5,307,429 - Psyr_4440 0.83 -0.3 5,307,435 + Psyr_4440 0.83 +0.2 5,307,435 + Psyr_4440 0.83 +1.3 5,307,435 + Psyr_4440 0.83 +0.8 5,307,435 + Psyr_4440 0.83 -0.1 5,307,436 - Psyr_4440 0.83 -0.8 5,307,436 - Psyr_4440 0.83 -1.8 5,307,498 + -1.7 5,307,498 + +0.6 5,307,498 + -1.3 5,307,499 - +3.0 5,307,499 - +0.8 5,307,499 - -0.4 5,307,499 - +0.3 5,307,566 + -1.3 5,307,566 + +0.0 5,307,566 + +1.3 5,307,566 + -1.9 5,307,566 + +0.7 5,307,566 + -0.4 5,307,566 + +0.4 5,307,566 + -1.0 5,307,566 + -1.1 5,307,566 + +1.5 5,307,567 - -1.0 5,307,567 - -0.8 5,307,573 + +0.1 5,307,573 + +0.0 5,307,573 + +0.6 5,307,573 + -0.9 5,307,574 - -1.0 5,307,574 - -1.0 5,307,574 - -1.2 5,307,576 + -1.1 5,307,576 + +1.8 5,307,577 - -0.4 5,307,577 - -1.0 5,307,594 + +0.7 5,307,595 - +0.6 5,307,631 + +2.2 5,307,632 - -0.1 5,307,680 - -0.5 5,307,683 + +0.6 5,307,684 - +0.8 5,307,696 + +0.4 5,307,696 + +0.2 5,307,698 + +1.6 5,307,699 - -0.4 5,307,704 + +0.1 5,307,704 + -2.0 5,307,705 - -0.4 5,307,733 + -1.1 5,307,746 + +1.0 5,307,746 + -1.0 5,307,746 + -0.4 5,307,746 + -0.4 5,307,746 + +0.6 5,307,746 + +0.2 5,307,746 + +1.2 5,307,746 + -2.2 5,307,746 + -0.8 5,307,746 + -0.2 5,307,746 + -0.8 5,307,746 + -0.9 5,307,746 + -0.0 5,307,746 + -0.2 5,307,746 + -1.2 5,307,747 - +0.0 5,307,747 - +1.2 5,307,747 - +0.9 5,307,747 - +0.9 5,307,747 - +1.5 5,307,747 - +0.6 5,307,747 - -1.2 5,307,747 - -0.4 5,307,779 + -1.5 5,307,780 - +0.1 5,307,825 + +3.5 5,307,825 + -1.2 5,307,826 - +0.4 5,307,835 + +1.0 5,307,836 - +0.0 5,307,836 - +1.0 5,307,836 - +1.4 5,307,836 - +0.6 5,307,836 - +0.4 5,307,839 + -1.4 5,307,839 + +1.1 5,307,839 + -1.8 5,307,839 + -0.3 5,307,839 + +0.1 5,307,839 + -1.2 5,307,839 + -1.0 5,307,839 + +0.2 5,307,840 - -0.3 5,307,840 - +0.2 5,307,840 - -0.4 5,307,840 - +0.6 5,307,840 - +1.6 5,307,840 - +0.7 5,307,840 - -2.1 5,307,840 - +0.3 5,307,840 - -0.3 5,307,840 - -0.8 5,307,841 + -1.4 5,307,842 - -0.9 5,307,842 - +1.9 5,307,842 - +0.6 5,307,881 + -2.3 5,307,881 + -1.5 5,307,881 + -1.0 5,307,881 + +0.3 5,307,912 + -3.3 5,307,912 + +0.3 5,307,912 + -0.7 5,307,913 - +0.9 5,307,913 - +0.4 5,307,913 - +0.8 5,307,913 - +0.9 5,308,037 - +0.9 5,308,086 - Psyr_4441 0.13 +1.4 5,308,086 - Psyr_4441 0.13 +0.3 5,308,121 + Psyr_4441 0.16 +1.0 5,308,122 - Psyr_4441 0.16 -1.1 5,308,122 - Psyr_4441 0.16 +0.8 5,308,122 - Psyr_4441 0.16 +0.3
Or see this region's nucleotide sequence