Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4370

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
5,222,648	-		Psyr_4369	0.44	+1.7
5,222,648	-		Psyr_4369	0.44	-2.4
5,222,648	-		Psyr_4369	0.44	-1.9
5,222,648	-		Psyr_4369	0.44	+0.5
5,222,648	-		Psyr_4369	0.44	+4.3
5,222,648	-		Psyr_4369	0.44	+0.4
5,222,648	-		Psyr_4369	0.44	-1.6
5,222,648	-		Psyr_4369	0.44	+1.5
5,222,648	-		Psyr_4369	0.44	+0.6
5,222,648	-		Psyr_4369	0.44	-0.3
5,222,648	-		Psyr_4369	0.44	-1.0
5,222,753	-		Psyr_4369	0.53	-1.1
5,222,975	-		Psyr_4369	0.70	+0.5
5,222,975	-		Psyr_4369	0.70	-1.1
5,222,975	-		Psyr_4369	0.70	+0.0
5,223,329	-				-2.0
5,223,329	-				-1.2
5,223,390	-				-1.2
5,223,390	-				-0.7
5,223,391	+				-0.8
5,223,391	+				-2.2
5,223,391	+				-2.7
5,223,391	+				-2.1
5,223,391	+				-2.7
5,223,391	+				-3.5
5,223,391	+				-2.9
5,223,391	+				-2.3
5,223,391	+				-0.1
5,223,391	+				-2.4
5,223,392	-				-2.5
5,223,392	-				+0.2
5,223,392	-				+2.1
5,223,392	-				-0.3
5,223,392	-				-1.5
5,223,392	-				-0.2
5,223,392	-				-2.2
5,223,392	-				-0.5
5,223,392	-				-0.4
5,223,623	+				-0.1
5,223,623	+				+0.1
5,223,623	+				+0.1
5,223,624	-				+0.1
5,223,636	-				-1.5
5,223,636	-				-2.0
5,223,768	+		Psyr_4370	0.20	-1.1
5,223,769	-		Psyr_4370	0.20	-0.6
5,223,769	-		Psyr_4370	0.20	-2.0
5,223,769	-		Psyr_4370	0.20	+1.2
5,223,769	-		Psyr_4370	0.20	+0.8
5,223,769	-		Psyr_4370	0.20	+0.4
5,223,772	-		Psyr_4370	0.20	-2.2
5,223,772	-		Psyr_4370	0.20	-1.1
5,223,772	-		Psyr_4370	0.20	+0.3
5,223,772	-		Psyr_4370	0.20	-1.2
5,223,772	-		Psyr_4370	0.20	-0.6
5,223,852	+		Psyr_4370	0.32	+1.0
5,223,852	+		Psyr_4370	0.32	-0.7
5,223,852	+		Psyr_4370	0.32	-1.0
5,223,852	+		Psyr_4370	0.32	-1.9
5,223,852	+		Psyr_4370	0.32	-0.5
5,223,852	+		Psyr_4370	0.32	-0.6
5,223,852	+		Psyr_4370	0.32	+3.8
5,223,852	+		Psyr_4370	0.32	+1.1
5,223,852	+		Psyr_4370	0.32	-0.4
5,223,852	+		Psyr_4370	0.32	-0.1
5,223,852	+		Psyr_4370	0.32	-0.3
5,223,852	+		Psyr_4370	0.32	+0.5
5,223,852	+		Psyr_4370	0.32	+0.2
5,223,852	+		Psyr_4370	0.32	-0.3
5,223,852	+		Psyr_4370	0.32	+0.9
5,223,852	+		Psyr_4370	0.32	-0.4
5,223,852	+		Psyr_4370	0.32	-1.8
5,223,852	+		Psyr_4370	0.32	-0.5
5,223,852	+		Psyr_4370	0.32	-0.7
5,223,852	+		Psyr_4370	0.32	+1.0
5,223,852	+		Psyr_4370	0.32	-1.3
5,223,852	+		Psyr_4370	0.32	-1.3
5,223,852	+		Psyr_4370	0.32	-1.4
5,223,852	+		Psyr_4370	0.32	+0.0
5,223,852	+		Psyr_4370	0.32	+0.5
5,223,852	+		Psyr_4370	0.32	-0.3
5,223,852	+		Psyr_4370	0.32	-1.0
5,223,852	+		Psyr_4370	0.32	-1.1
5,223,852	+		Psyr_4370	0.32	-0.6
5,223,852	+		Psyr_4370	0.32	-1.1
5,223,852	+		Psyr_4370	0.32	-1.6
5,223,852	+		Psyr_4370	0.32	-2.1
5,223,852	+		Psyr_4370	0.32	+3.3
5,223,852	+		Psyr_4370	0.32	-0.2
5,223,852	+		Psyr_4370	0.32	-2.0
5,223,852	+		Psyr_4370	0.32	-2.6
5,223,852	+		Psyr_4370	0.32	+1.1
5,223,852	+		Psyr_4370	0.32	-0.2
5,223,853	-		Psyr_4370	0.32	+0.7
5,223,853	-		Psyr_4370	0.32	+1.4
5,223,853	-		Psyr_4370	0.32	+1.1
5,223,853	-		Psyr_4370	0.32	+1.2
5,223,853	-		Psyr_4370	0.32	-1.8
5,223,853	-		Psyr_4370	0.32	+0.3
5,223,853	-		Psyr_4370	0.32	-1.3
5,223,853	-		Psyr_4370	0.32	-0.8
5,223,853	-		Psyr_4370	0.32	-0.8
5,223,853	-		Psyr_4370	0.32	-0.1
5,223,853	-		Psyr_4370	0.32	-3.8
5,223,853	-		Psyr_4370	0.32	-0.4
5,223,853	-		Psyr_4370	0.32	+0.2
5,223,853	-		Psyr_4370	0.32	+2.6
5,223,853	-		Psyr_4370	0.32	-0.7
5,223,853	-		Psyr_4370	0.32	+3.7
5,223,853	-		Psyr_4370	0.32	+0.1
5,223,853	-		Psyr_4370	0.32	+1.6
5,223,853	-		Psyr_4370	0.32	-0.3
5,223,853	-		Psyr_4370	0.32	+0.4
5,223,853	-		Psyr_4370	0.32	+0.9
5,223,853	-		Psyr_4370	0.32	-0.3
5,223,853	-		Psyr_4370	0.32	-2.4
5,223,853	-		Psyr_4370	0.32	+2.5
5,223,853	-		Psyr_4370	0.32	-0.7
5,223,853	-		Psyr_4370	0.32	+0.4
5,223,853	-		Psyr_4370	0.32	+0.1
5,223,853	-		Psyr_4370	0.32	+0.9
5,223,853	-		Psyr_4370	0.32	+1.6
5,223,853	-		Psyr_4370	0.32	+1.2
5,223,853	-		Psyr_4370	0.32	+1.1
5,223,853	-		Psyr_4370	0.32	-0.4
5,223,853	-		Psyr_4370	0.32	+0.6
5,223,853	-		Psyr_4370	0.32	-0.5
5,223,853	-		Psyr_4370	0.32	-1.6
5,223,853	-		Psyr_4370	0.32	+1.4
5,223,853	-		Psyr_4370	0.32	+0.1
5,223,853	-		Psyr_4370	0.32	-1.2
5,223,854	+		Psyr_4370	0.32	-0.2
5,223,854	+		Psyr_4370	0.32	-0.6
5,223,854	+		Psyr_4370	0.32	-0.2
5,223,854	+		Psyr_4370	0.32	-1.6
5,223,854	+		Psyr_4370	0.32	+0.5
5,223,854	+		Psyr_4370	0.32	+1.9
5,223,854	+		Psyr_4370	0.32	-1.1
5,223,854	+		Psyr_4370	0.32	+0.8
5,223,854	+		Psyr_4370	0.32	-0.6
5,223,854	+		Psyr_4370	0.32	-0.2
5,223,854	+		Psyr_4370	0.32	-0.3
5,223,854	+		Psyr_4370	0.32	-1.0
5,223,854	+		Psyr_4370	0.32	-1.2
5,223,854	+		Psyr_4370	0.32	+1.5
5,223,854	+		Psyr_4370	0.32	-1.5
5,223,854	+		Psyr_4370	0.32	-0.1
5,223,854	+		Psyr_4370	0.32	+0.6
5,223,854	+		Psyr_4370	0.32	+0.9
5,223,854	+		Psyr_4370	0.32	+0.4
5,223,854	+		Psyr_4370	0.32	-0.2
5,223,854	+		Psyr_4370	0.32	-0.5
5,223,855	-		Psyr_4370	0.33	+0.5
5,223,855	-		Psyr_4370	0.33	+0.3
5,223,855	-		Psyr_4370	0.33	+0.8
5,223,855	-		Psyr_4370	0.33	-0.8
5,223,855	-		Psyr_4370	0.33	+1.1
5,223,855	-		Psyr_4370	0.33	-0.2
5,223,855	-		Psyr_4370	0.33	+0.9
5,223,855	-		Psyr_4370	0.33	-0.5
5,223,855	-		Psyr_4370	0.33	+0.9
5,223,855	-		Psyr_4370	0.33	+1.2
5,223,855	-		Psyr_4370	0.33	+0.2
5,223,855	-		Psyr_4370	0.33	+0.5
5,223,855	-		Psyr_4370	0.33	+0.5
5,223,855	-		Psyr_4370	0.33	+0.5
5,223,855	-		Psyr_4370	0.33	-1.1
5,223,855	-		Psyr_4370	0.33	+1.0
5,223,855	-		Psyr_4370	0.33	-0.2
5,223,855	-		Psyr_4370	0.33	+0.8
5,223,855	-		Psyr_4370	0.33	-0.1
5,223,855	-		Psyr_4370	0.33	+0.4
5,223,855	-		Psyr_4370	0.33	-0.1
5,223,855	-		Psyr_4370	0.33	+1.1
5,223,855	-		Psyr_4370	0.33	+2.5
5,223,855	-		Psyr_4370	0.33	+0.1
5,223,858	+		Psyr_4370	0.33	-2.7
5,223,858	+		Psyr_4370	0.33	+0.2
5,223,858	+		Psyr_4370	0.33	-0.4
5,223,858	+		Psyr_4370	0.33	+0.5
5,223,858	+		Psyr_4370	0.33	+0.5
5,223,858	+		Psyr_4370	0.33	+0.3
5,223,858	+		Psyr_4370	0.33	-0.4
5,223,858	+		Psyr_4370	0.33	+0.9
5,223,858	+		Psyr_4370	0.33	+0.3
5,223,858	+		Psyr_4370	0.33	-0.2
5,223,858	+		Psyr_4370	0.33	+0.1
5,223,858	+		Psyr_4370	0.33	-0.4
5,223,858	+		Psyr_4370	0.33	-1.2
5,223,858	+		Psyr_4370	0.33	-0.3
5,223,858	+		Psyr_4370	0.33	+0.3
5,223,858	+		Psyr_4370	0.33	+0.9
5,223,858	+		Psyr_4370	0.33	-1.5
5,223,859	-		Psyr_4370	0.33	+1.2
5,223,859	-		Psyr_4370	0.33	+0.9
5,223,859	-		Psyr_4370	0.33	+0.4
5,223,859	-		Psyr_4370	0.33	+0.3
5,223,859	-		Psyr_4370	0.33	-0.8
5,223,859	-		Psyr_4370	0.33	-2.2
5,223,859	-		Psyr_4370	0.33	-0.1
5,223,859	-		Psyr_4370	0.33	+1.0
5,223,859	-		Psyr_4370	0.33	+2.7
5,223,859	-		Psyr_4370	0.33	-0.0
5,223,859	-		Psyr_4370	0.33	+0.8
5,223,859	-		Psyr_4370	0.33	+0.0
5,223,859	-		Psyr_4370	0.33	-0.8
5,223,859	-		Psyr_4370	0.33	+0.0
5,223,859	-		Psyr_4370	0.33	+1.2
5,223,859	-		Psyr_4370	0.33	+0.2
5,223,861	+		Psyr_4370	0.33	-1.9
5,223,862	-		Psyr_4370	0.34	+0.4
5,223,862	-		Psyr_4370	0.34	-2.7
5,223,862	-		Psyr_4370	0.34	+2.4
5,223,862	-		Psyr_4370	0.34	-1.2
5,223,862	-		Psyr_4370	0.34	-1.4
5,224,148	+		Psyr_4370	0.76	+0.7
5,224,148	+		Psyr_4370	0.76	+0.4
5,224,148	+		Psyr_4370	0.76	+2.2
5,224,148	+		Psyr_4370	0.76	+1.7
5,224,149	-		Psyr_4370	0.76	-0.3
5,224,149	-		Psyr_4370	0.76	-0.0
5,224,149	-		Psyr_4370	0.76	+1.3
5,224,149	-		Psyr_4370	0.76	-0.1
5,224,203	+		Psyr_4370	0.84	+0.5
5,224,203	+		Psyr_4370	0.84	-2.9
5,224,204	-		Psyr_4370	0.85	+0.7
5,224,281	+				+0.7
5,224,285	+				-0.3
5,224,285	+				+1.6
5,224,285	+				-1.2
5,224,285	+				+1.5
5,224,286	-				-0.9
5,224,286	-				-2.0
5,224,286	-				-0.4
5,224,286	-				+0.2
5,224,286	-				+2.0
5,224,286	-				-0.5
5,224,286	-				+0.1
5,224,286	-				-1.7
5,224,286	-				+1.0
5,224,286	-				-0.8
5,224,286	-				-0.9
5,224,477	+		Psyr_4371	0.13	-0.9
5,224,542	+		Psyr_4371	0.18	-0.3
5,224,542	+		Psyr_4371	0.18	+0.5
5,224,542	+		Psyr_4371	0.18	-0.8
5,224,542	+		Psyr_4371	0.18	-1.3
5,224,542	+		Psyr_4371	0.18	-1.3
5,224,543	-		Psyr_4371	0.18	-1.9
5,224,543	-		Psyr_4371	0.18	-3.7
5,224,543	-		Psyr_4371	0.18	-1.4
5,224,630	-		Psyr_4371	0.24	+3.4
5,224,664	-		Psyr_4371	0.27	-1.0
5,224,664	-		Psyr_4371	0.27	-1.2
5,224,782	+		Psyr_4371	0.36	+0.9
5,224,907	+		Psyr_4371	0.45	+1.9
5,224,908	-		Psyr_4371	0.45	-0.6
5,224,908	-		Psyr_4371	0.45	+0.9
5,224,923	+		Psyr_4371	0.46	+0.7
5,225,119	+		Psyr_4371	0.61	-2.2
5,225,119	+		Psyr_4371	0.61	-1.9
5,225,248	+		Psyr_4371	0.71	-0.9
5,225,248	+		Psyr_4371	0.71	-1.1
5,225,265	+		Psyr_4371	0.72	-2.0
5,225,265	+		Psyr_4371	0.72	+2.3
5,225,266	-		Psyr_4371	0.73	+0.4
5,225,266	-		Psyr_4371	0.73	-0.7
5,225,266	-		Psyr_4371	0.73	-0.4
5,225,266	-		Psyr_4371	0.73	-0.9
5,225,266	-		Psyr_4371	0.73	-2.1
5,225,266	-		Psyr_4371	0.73	+0.6
5,225,266	-		Psyr_4371	0.73	-1.4
5,225,285	+		Psyr_4371	0.74	-0.0