Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4237

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
5,047,583	+		Psyr_4236	0.54	-0.9
5,047,583	+		Psyr_4236	0.54	-0.8
5,047,584	-		Psyr_4236	0.54	+0.3
5,047,584	-		Psyr_4236	0.54	+0.2
5,047,584	-		Psyr_4236	0.54	+1.9
5,047,584	-		Psyr_4236	0.54	+1.0
5,047,592	+		Psyr_4236	0.55	+0.0
5,047,592	+		Psyr_4236	0.55	-2.0
5,047,592	+		Psyr_4236	0.55	-1.5
5,047,592	+		Psyr_4236	0.55	-1.2
5,047,593	-		Psyr_4236	0.55	-2.8
5,047,593	-		Psyr_4236	0.55	+1.2
5,047,593	-		Psyr_4236	0.55	+1.9
5,047,593	-		Psyr_4236	0.55	-1.2
5,047,593	-		Psyr_4236	0.55	+0.5
5,047,593	-		Psyr_4236	0.55	-0.7
5,047,593	-		Psyr_4236	0.55	-0.1
5,047,736	+		Psyr_4236	0.64	-0.5
5,047,736	+		Psyr_4236	0.64	-1.3
5,047,736	+		Psyr_4236	0.64	+1.4
5,047,737	-		Psyr_4236	0.64	+0.6
5,047,824	+		Psyr_4236	0.69	-1.3
5,047,824	+		Psyr_4236	0.69	-0.6
5,047,825	-		Psyr_4236	0.69	+6.0
5,047,825	-		Psyr_4236	0.69	+0.2
5,047,938	-		Psyr_4236	0.77	-0.4
5,047,938	-		Psyr_4236	0.77	-0.2
5,047,952	+		Psyr_4236	0.77	+0.0
5,047,953	-		Psyr_4236	0.77	-1.6
5,047,984	+		Psyr_4236	0.79	+1.4
5,048,045	+		Psyr_4236	0.83	-0.5
5,048,045	+		Psyr_4236	0.83	-1.7
5,048,045	+		Psyr_4236	0.83	+0.2
5,048,045	+		Psyr_4236	0.83	+2.0
5,048,045	+		Psyr_4236	0.83	+1.0
5,048,075	+		Psyr_4236	0.85	-3.1
5,048,075	+		Psyr_4236	0.85	-0.2
5,048,075	+		Psyr_4236	0.85	-0.4
5,048,076	-		Psyr_4236	0.85	+0.7
5,048,076	-		Psyr_4236	0.85	-1.1
5,048,100	-		Psyr_4236	0.87	-0.8
5,048,177	+				+0.2
5,048,178	-				-0.4
5,048,378	+				-2.5
5,048,378	+				-0.8
5,048,378	+				-1.8
5,048,378	+				-0.9
5,048,379	-				+1.0
5,048,379	-				+0.5
5,048,379	-				+0.2
5,048,379	-				+0.8
5,048,379	-				-0.2
5,048,379	-				+0.2
5,048,379	-				+2.2
5,048,379	-				+1.5
5,048,379	-				-0.0
5,048,379	-				-1.5
5,048,379	-				-0.6
5,048,379	-				+0.9
5,048,379	-				+0.7
5,048,379	-				+0.2
5,048,380	+				-2.2
5,048,437	+				-1.0
5,048,438	-				-1.2
5,048,438	-				-1.3
5,048,438	-				-1.4
5,048,439	+				-1.2
5,048,439	+				-1.8
5,048,439	+				-2.1
5,048,439	+				-3.1
5,048,450	+				-1.3
5,048,479	+				+1.3
5,048,479	+				+0.0
5,048,480	-				+0.6
5,048,480	-				+0.4
5,048,480	-				+0.0
5,048,480	-				-1.0
5,048,480	-				+0.8
5,048,638	+		Psyr_4237	0.12	+0.4
5,048,684	+		Psyr_4237	0.15	-0.7
5,048,684	+		Psyr_4237	0.15	+0.4
5,048,684	+		Psyr_4237	0.15	+3.1
5,048,685	-		Psyr_4237	0.15	+0.2
5,048,685	-		Psyr_4237	0.15	-0.4
5,048,722	+		Psyr_4237	0.18	-2.2
5,048,753	+		Psyr_4237	0.20	-2.2
5,048,753	+		Psyr_4237	0.20	-1.2
5,048,753	+		Psyr_4237	0.20	-1.0
5,048,753	+		Psyr_4237	0.20	-0.0
5,048,753	+		Psyr_4237	0.20	-1.3
5,048,753	+		Psyr_4237	0.20	-1.6
5,048,753	+		Psyr_4237	0.20	+1.5
5,048,754	-		Psyr_4237	0.20	-0.5
5,048,754	-		Psyr_4237	0.20	-0.3
5,048,754	-		Psyr_4237	0.20	+0.4
5,048,754	-		Psyr_4237	0.20	+1.0
5,048,754	-		Psyr_4237	0.20	-0.6
5,048,754	-		Psyr_4237	0.20	-0.6
5,048,754	-		Psyr_4237	0.20	-0.1
5,048,781	+		Psyr_4237	0.22	-1.5
5,048,781	+		Psyr_4237	0.22	+0.2
5,048,781	+		Psyr_4237	0.22	+0.5
5,048,781	+		Psyr_4237	0.22	+0.8
5,048,781	+		Psyr_4237	0.22	-2.4
5,048,782	-		Psyr_4237	0.22	+0.3
5,048,782	-		Psyr_4237	0.22	+2.4
5,048,782	-		Psyr_4237	0.22	-0.9
5,048,807	+		Psyr_4237	0.24	+2.2
5,048,807	+		Psyr_4237	0.24	+0.1
5,048,807	+		Psyr_4237	0.24	+0.2
5,048,807	+		Psyr_4237	0.24	+0.2
5,048,808	-		Psyr_4237	0.24	+1.4
5,048,808	-		Psyr_4237	0.24	+0.9
5,048,949	+		Psyr_4237	0.34	+1.0
5,049,040	-		Psyr_4237	0.40	-1.1
5,049,059	-		Psyr_4237	0.42	+0.7
5,049,080	-		Psyr_4237	0.43	+0.6
5,049,103	+		Psyr_4237	0.45	-2.2
5,049,103	+		Psyr_4237	0.45	+1.9
5,049,103	+		Psyr_4237	0.45	-0.2
5,049,103	+		Psyr_4237	0.45	-2.6
5,049,103	+		Psyr_4237	0.45	-1.2
5,049,103	+		Psyr_4237	0.45	-0.5
5,049,104	-		Psyr_4237	0.45	-0.6
5,049,104	-		Psyr_4237	0.45	-0.2
5,049,104	-		Psyr_4237	0.45	-0.6
5,049,104	-		Psyr_4237	0.45	-0.5
5,049,104	-		Psyr_4237	0.45	+1.0
5,049,188	+		Psyr_4237	0.51	-3.5
5,049,188	+		Psyr_4237	0.51	-0.3
5,049,188	+		Psyr_4237	0.51	-0.4
5,049,188	+		Psyr_4237	0.51	-2.2
5,049,189	-		Psyr_4237	0.51	-1.4
5,049,189	-		Psyr_4237	0.51	-0.7
5,049,221	+		Psyr_4237	0.53	+1.8
5,049,222	-		Psyr_4237	0.53	+1.2
5,049,254	+		Psyr_4237	0.56	+2.3
5,049,254	+		Psyr_4237	0.56	-0.6
5,049,254	+		Psyr_4237	0.56	+1.0
5,049,255	-		Psyr_4237	0.56	-1.4
5,049,258	-		Psyr_4237	0.56	+1.4
5,049,258	-		Psyr_4237	0.56	+0.5
5,049,258	-		Psyr_4237	0.56	+0.6
5,049,320	+		Psyr_4237	0.60	+0.6
5,049,320	+		Psyr_4237	0.60	-0.2
5,049,320	+		Psyr_4237	0.60	-0.2
5,049,320	+		Psyr_4237	0.60	-0.3
5,049,321	-		Psyr_4237	0.60	+0.2
5,049,321	-		Psyr_4237	0.60	-1.0
5,049,321	-		Psyr_4237	0.60	+1.6
5,049,321	-		Psyr_4237	0.60	+0.2
5,049,321	-		Psyr_4237	0.60	+0.1
5,049,321	-		Psyr_4237	0.60	-1.1
5,049,323	+		Psyr_4237	0.60	-0.0
5,049,323	+		Psyr_4237	0.60	-0.9
5,049,324	-		Psyr_4237	0.60	-0.4
5,049,324	-		Psyr_4237	0.60	-1.1
5,049,324	-		Psyr_4237	0.60	-0.6
5,049,324	-		Psyr_4237	0.60	+1.2
5,049,373	+		Psyr_4237	0.64	-0.1
5,049,373	+		Psyr_4237	0.64	+1.0
5,049,373	+		Psyr_4237	0.64	-0.7
5,049,373	+		Psyr_4237	0.64	-2.3
5,049,377	+		Psyr_4237	0.64	-2.2
5,049,377	+		Psyr_4237	0.64	-1.6
5,049,377	+		Psyr_4237	0.64	-0.1
5,049,377	+		Psyr_4237	0.64	-0.9
5,049,377	+		Psyr_4237	0.64	+0.5
5,049,378	-		Psyr_4237	0.64	+1.7
5,049,378	-		Psyr_4237	0.64	+2.4
5,049,378	-		Psyr_4237	0.64	+0.1
5,049,378	-		Psyr_4237	0.64	-0.1
5,049,378	-		Psyr_4237	0.64	+0.4
5,049,378	-		Psyr_4237	0.64	-1.3
5,049,378	-		Psyr_4237	0.64	+0.1
5,049,438	+		Psyr_4237	0.69	-0.9
5,049,438	+		Psyr_4237	0.69	-1.0
5,049,439	-		Psyr_4237	0.69	+0.4
5,049,439	-		Psyr_4237	0.69	+1.2
5,049,439	-		Psyr_4237	0.69	-0.1
5,049,439	-		Psyr_4237	0.69	-1.1
5,049,439	-		Psyr_4237	0.69	+1.5
5,049,439	-		Psyr_4237	0.69	-1.0
5,049,439	-		Psyr_4237	0.69	-1.5
5,049,452	+		Psyr_4237	0.69	-0.8
5,049,452	+		Psyr_4237	0.69	-0.2
5,049,452	+		Psyr_4237	0.69	+0.7
5,049,452	+		Psyr_4237	0.69	+0.8
5,049,453	-		Psyr_4237	0.70	-0.5
5,049,453	-		Psyr_4237	0.70	+0.8
5,049,461	+		Psyr_4237	0.70	+1.7
5,049,548	+		Psyr_4237	0.76	-1.5
5,049,548	+		Psyr_4237	0.76	+0.1
5,049,552	+		Psyr_4237	0.77	-1.5
5,049,553	-		Psyr_4237	0.77	+0.5
5,049,553	-		Psyr_4237	0.77	-0.1
5,049,599	+		Psyr_4237	0.80	-1.7
5,049,599	+		Psyr_4237	0.80	+1.1
5,049,600	-		Psyr_4237	0.80	-0.8
5,049,600	-		Psyr_4237	0.80	-0.9
5,049,635	+		Psyr_4237	0.82	+0.1
5,049,635	+		Psyr_4237	0.82	+0.2
5,049,635	+		Psyr_4237	0.82	-0.5
5,049,682	+		Psyr_4237	0.86	-2.9
5,049,682	+		Psyr_4237	0.86	-0.6
5,049,683	-		Psyr_4237	0.86	+0.5
5,049,696	+		Psyr_4237	0.87	+1.0
5,049,722	+		Psyr_4237	0.89	-1.4
5,049,723	-		Psyr_4237	0.89	-0.5
5,049,723	-		Psyr_4237	0.89	+2.9
5,049,723	-		Psyr_4237	0.89	+1.9
5,049,728	+		Psyr_4237	0.89	-1.4
5,049,728	+		Psyr_4237	0.89	-3.2
5,049,746	+				-1.4
5,049,794	+				+0.5
5,049,795	-				+0.5
5,049,795	-				+0.6
5,049,795	-				+0.6
5,049,795	-				+1.1
5,049,795	-				+0.5
5,049,795	-				+1.5
5,049,948	+				+0.1
5,049,948	+				+0.1
5,049,948	+				+1.5
5,049,949	-				-1.6
5,050,073	+				-0.7
5,050,073	+				-0.8
5,050,073	+				+0.3
5,050,128	+		Psyr_4238	0.11	-1.8
5,050,153	+		Psyr_4238	0.13	-0.6
5,050,205	+		Psyr_4238	0.16	-0.5
5,050,206	-		Psyr_4238	0.16	+3.5
5,050,206	-		Psyr_4238	0.16	+2.6
5,050,206	-		Psyr_4238	0.16	+0.3
5,050,206	-		Psyr_4238	0.16	+1.5
5,050,250	+		Psyr_4238	0.19	-1.6
5,050,358	+		Psyr_4238	0.26	+1.6
5,050,358	+		Psyr_4238	0.26	-0.7
5,050,491	-		Psyr_4238	0.34	-0.5
5,050,491	-		Psyr_4238	0.34	+0.0
5,050,502	+		Psyr_4238	0.35	+0.7
5,050,612	+		Psyr_4238	0.41	-1.0
5,050,612	+		Psyr_4238	0.41	-0.0
5,050,612	+		Psyr_4238	0.41	-0.0
5,050,612	+		Psyr_4238	0.41	+0.2
5,050,613	-		Psyr_4238	0.42	+0.8
5,050,733	+		Psyr_4238	0.49	+0.1
5,050,751	-		Psyr_4238	0.50	+0.3
5,050,751	-		Psyr_4238	0.50	+0.3
5,050,751	-		Psyr_4238	0.50	+2.5
5,050,814	+		Psyr_4238	0.54	-1.8
5,050,814	+		Psyr_4238	0.54	+0.3
5,050,814	+		Psyr_4238	0.54	-0.5
5,050,815	-		Psyr_4238	0.54	-3.1
5,050,815	-		Psyr_4238	0.54	+0.9
5,050,815	-		Psyr_4238	0.54	+1.7
5,050,842	-		Psyr_4238	0.56	-0.4
5,050,842	-		Psyr_4238	0.56	-1.4
5,050,842	-		Psyr_4238	0.56	-0.0
5,050,842	-		Psyr_4238	0.56	+0.4
5,050,842	-		Psyr_4238	0.56	+2.0
5,050,842	-		Psyr_4238	0.56	-1.3
5,050,842	-		Psyr_4238	0.56	+0.7