Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3655

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
4,339,446	+				+0.6
4,339,446	+				-0.9
4,339,446	+				+0.6
4,339,446	+				-0.0
4,339,446	+				-0.7
4,339,447	-				+0.8
4,339,594	+				+4.6
4,339,594	+				-0.3
4,339,594	+				+0.7
4,339,594	+				+1.4
4,339,594	+				-0.3
4,339,594	+				-0.7
4,339,594	+				-0.0
4,339,594	+				-1.7
4,339,594	+				+0.1
4,339,594	+				-0.7
4,339,594	+				+0.5
4,339,595	-				+0.1
4,339,595	-				+3.5
4,339,595	-				+1.1
4,339,595	-				-0.2
4,339,595	-				-0.2
4,339,595	-				-2.0
4,339,600	+		Psyr_3654	0.10	+1.5
4,339,600	+		Psyr_3654	0.10	-0.6
4,339,600	+		Psyr_3654	0.10	-2.1
4,339,600	+		Psyr_3654	0.10	+1.9
4,339,600	+		Psyr_3654	0.10	-0.7
4,339,600	+				-0.7
4,339,601	-		Psyr_3654	0.10	-0.2
4,339,601	-		Psyr_3654	0.10	-0.7
4,339,601	-		Psyr_3654	0.10	-1.1
4,339,601	-		Psyr_3654	0.10	-0.2
4,339,601	-		Psyr_3654	0.10	-1.5
4,339,601	-		Psyr_3654	0.10	+0.8
4,339,601	-		Psyr_3654	0.10	-2.7
4,339,601	-		Psyr_3654	0.10	+0.1
4,339,601	-		Psyr_3654	0.10	+0.5
4,339,601	-		Psyr_3654	0.10	+0.5
4,339,607	-		Psyr_3654	0.11	+1.5
4,339,674	-		Psyr_3654	0.20	-0.3
4,339,674	-		Psyr_3654	0.20	-0.3
4,339,674	-		Psyr_3654	0.20	-0.8
4,339,674	-		Psyr_3654	0.20	+0.4
4,339,837	+		Psyr_3654	0.40	-0.0
4,339,837	+		Psyr_3654	0.40	-0.2
4,339,837	+		Psyr_3654	0.40	-0.3
4,339,838	-		Psyr_3654	0.40	-1.7
4,339,838	-		Psyr_3654	0.40	-1.5
4,339,838	-		Psyr_3654	0.40	+0.1
4,339,838	-		Psyr_3654	0.40	-0.1
4,339,838	-		Psyr_3654	0.40	+0.2
4,339,838	-		Psyr_3654	0.40	+0.3
4,339,838	-		Psyr_3654	0.40	+0.3
4,339,838	-		Psyr_3654	0.40	+0.4
4,339,838	-		Psyr_3654	0.40	-0.2
4,339,838	-		Psyr_3654	0.40	-1.7
4,339,838	-		Psyr_3654	0.40	+0.1
4,339,838	-		Psyr_3654	0.40	-1.2
4,339,985	-				+0.6
4,340,092	+		Psyr_3654	0.73	-1.1
4,340,092	+		Psyr_3654	0.73	+1.1
4,340,092	+		Psyr_3654	0.73	-0.7
4,340,092	+		Psyr_3654	0.73	+2.2
4,340,092	+		Psyr_3654	0.73	+1.0
4,340,092	+		Psyr_3654	0.73	+1.2
4,340,092	+		Psyr_3654	0.73	+0.2
4,340,092	+				+3.9
4,340,093	-		Psyr_3654	0.73	-0.1
4,340,093	-		Psyr_3654	0.73	+1.0
4,340,093	-		Psyr_3654	0.73	+0.7
4,340,093	-		Psyr_3654	0.73	+0.6
4,340,093	-		Psyr_3654	0.73	-0.4
4,340,093	-		Psyr_3654	0.73	-0.1
4,340,093	-		Psyr_3654	0.73	+0.5
4,340,093	-		Psyr_3654	0.73	+0.4
4,340,093	-		Psyr_3654	0.73	-0.7
4,340,093	-		Psyr_3654	0.73	+0.7
4,340,135	-		Psyr_3654	0.78	+1.1
4,340,183	-		Psyr_3654	0.85	-0.1
4,340,317	+				+0.3
4,340,341	+				+0.4
4,340,341	+				+1.0
4,340,380	+				+1.6
4,340,391	+				+0.3
4,340,392	-				-0.7
4,340,393	+				+1.6
4,340,393	+				+0.2
4,340,394	-				-0.2
4,340,394	-				+1.1
4,340,394	-				-0.2
4,340,436	-				+2.8
4,340,498	+				+1.0
4,340,499	-				+1.8
4,340,499	-				+0.6
4,340,509	-				+3.6
4,340,509	-				-0.4
4,340,509	-				+2.0
4,340,535	+				+1.8
4,340,538	+				+2.1
4,340,538	+				-0.1
4,340,538	+				-0.3
4,340,538	+				+0.9
4,340,539	-				+2.2
4,340,539	-				+2.1
4,340,539	-				+1.5
4,340,557	-				+0.3
4,340,557	-				+2.1
4,340,639	+		Psyr_3655	0.12	+1.9
4,340,640	-		Psyr_3655	0.12	+1.3
4,340,640	-		Psyr_3655	0.12	+0.2
4,340,656	-		Psyr_3655	0.13	-0.5
4,340,785	+		Psyr_3655	0.18	+2.3
4,340,786	-		Psyr_3655	0.18	-1.4
4,340,786	-		Psyr_3655	0.18	+3.8
4,340,829	+		Psyr_3655	0.20	+0.6
4,340,829	+		Psyr_3655	0.20	+2.7
4,340,829	+		Psyr_3655	0.20	+1.7
4,340,829	+		Psyr_3655	0.20	+0.9
4,340,829	+		Psyr_3655	0.20	+1.8
4,340,830	-		Psyr_3655	0.20	-0.1
4,340,830	-		Psyr_3655	0.20	-0.7
4,340,861	-		Psyr_3655	0.21	+1.4
4,340,863	-		Psyr_3655	0.21	+0.3
4,340,869	+		Psyr_3655	0.22	+0.8
4,340,869	+		Psyr_3655	0.22	+0.3
4,340,869	+		Psyr_3655	0.22	-1.4
4,340,869	+		Psyr_3655	0.22	-1.5
4,340,869	+		Psyr_3655	0.22	-0.1
4,340,869	+		Psyr_3655	0.22	+0.5
4,340,869	+		Psyr_3655	0.22	+0.3
4,340,869	+		Psyr_3655	0.22	+2.2
4,340,869	+		Psyr_3655	0.22	+3.6
4,340,869	+		Psyr_3655	0.22	+4.4
4,340,870	-		Psyr_3655	0.22	+0.4
4,340,870	-		Psyr_3655	0.22	+2.4
4,340,870	-		Psyr_3655	0.22	+3.9
4,340,870	-		Psyr_3655	0.22	+0.4
4,340,870	-		Psyr_3655	0.22	+2.4
4,340,935	+		Psyr_3655	0.24	-0.7
4,340,936	-		Psyr_3655	0.24	+0.4
4,341,055	+		Psyr_3655	0.29	-0.1
4,341,098	+		Psyr_3655	0.31	-0.7
4,341,099	-		Psyr_3655	0.31	+0.6
4,341,142	+		Psyr_3655	0.33	+1.3
4,341,194	+		Psyr_3655	0.35	-1.3
4,341,231	+		Psyr_3655	0.36	+0.5
4,341,231	+		Psyr_3655	0.36	+0.7
4,341,231	+		Psyr_3655	0.36	+2.2
4,341,231	+		Psyr_3655	0.36	-0.3
4,341,232	-		Psyr_3655	0.36	+2.2
4,341,232	-		Psyr_3655	0.36	+1.9
4,341,232	-		Psyr_3655	0.36	+1.4
4,341,232	-		Psyr_3655	0.36	-0.3
4,341,233	+		Psyr_3655	0.36	+2.0
4,341,233	+		Psyr_3655	0.36	-0.7
4,341,233	+		Psyr_3655	0.36	+2.7
4,341,233	+		Psyr_3655	0.36	+0.5
4,341,233	+		Psyr_3655	0.36	+1.9
4,341,233	+		Psyr_3655	0.36	+2.1
4,341,233	+		Psyr_3655	0.36	+3.1
4,341,233	+		Psyr_3655	0.36	+1.2
4,341,233	+		Psyr_3655	0.36	-0.0
4,341,233	+		Psyr_3655	0.36	+1.3
4,341,233	+		Psyr_3655	0.36	+1.1
4,341,233	+		Psyr_3655	0.36	+2.0
4,341,234	-		Psyr_3655	0.37	-0.3
4,341,234	-		Psyr_3655	0.37	+1.6
4,341,234	-		Psyr_3655	0.37	+0.8
4,341,234	-		Psyr_3655	0.37	+3.3
4,341,234	-		Psyr_3655	0.37	+3.4
4,341,234	-		Psyr_3655	0.37	+0.3
4,341,282	+		Psyr_3655	0.38	+0.4
4,341,282	+		Psyr_3655	0.38	+1.2
4,341,283	-		Psyr_3655	0.38	+2.4
4,341,295	+		Psyr_3655	0.39	+0.9
4,341,295	+		Psyr_3655	0.39	-0.2
4,341,316	-		Psyr_3655	0.40	+0.5
4,341,457	-		Psyr_3655	0.46	+1.0
4,341,701	+		Psyr_3655	0.55	-0.6
4,341,701	+		Psyr_3655	0.55	+1.2
4,341,701	+		Psyr_3655	0.55	+1.0
4,341,702	-		Psyr_3655	0.56	+1.0
4,341,702	-		Psyr_3655	0.56	+1.9
4,341,702	-		Psyr_3655	0.56	+1.2
4,341,764	+		Psyr_3655	0.58	+2.2
4,341,992	+		Psyr_3655	0.67	+2.3
4,341,992	+		Psyr_3655	0.67	+0.7
4,341,992	+		Psyr_3655	0.67	-0.7
4,341,992	+		Psyr_3655	0.67	+1.6
4,341,992	+		Psyr_3655	0.67	+3.3
4,341,992	+		Psyr_3655	0.67	+1.1
4,342,147	+		Psyr_3655	0.74	+1.3
4,342,361	+		Psyr_3655	0.82	+1.6
4,342,362	-		Psyr_3655	0.82	+2.1
4,342,427	+		Psyr_3655	0.85	+0.9
4,342,427	+		Psyr_3655	0.85	+2.0
4,342,427	+		Psyr_3655	0.85	-0.1
4,342,428	-		Psyr_3655	0.85	+1.4
4,342,428	-		Psyr_3655	0.85	+1.7
4,342,428	-		Psyr_3655	0.85	+2.4
4,342,581	-				+2.2
4,342,619	+				+0.9
4,342,670	+				-0.0
4,342,670	+				+0.0
4,342,670	+				-0.2
4,342,670	+				+0.4
4,342,670	+				+1.1
4,342,670	+				+1.1
4,342,670	+				+0.8
4,342,670	+				+1.8
4,342,670	+				+1.0
4,342,670	+				+3.1
4,342,670	+				+0.3
4,342,670	+				-0.9
4,342,671	-				+1.0
4,342,671	-				+1.5
4,342,671	-				+0.9
4,342,671	-				+2.2
4,342,671	-				+3.7
4,342,671	-				+0.4
4,342,671	-				+4.2
4,342,671	-				+1.4
4,342,824	+				+2.1
4,342,825	-				-2.5
4,342,825	-				-1.5
4,342,934	-				-0.5
4,342,943	+				-1.1
4,342,944	-				-1.1
4,342,956	-				+1.6
4,343,004	+				-0.9
4,343,004	+				+1.3
4,343,005	-				-3.4
4,343,005	-				-2.4
4,343,020	+				-0.7
4,343,020	+				+0.4
4,343,021	-				+0.5
4,343,027	-				-2.0
4,343,120	+		Psyr_3656	0.11	+1.7
4,343,120	+		Psyr_3656	0.11	+1.9
4,343,486	+		Psyr_3656	0.31	+0.4
4,343,486	+		Psyr_3656	0.31	-1.1
4,343,486	+		Psyr_3656	0.31	-1.2
4,343,487	-		Psyr_3656	0.31	+0.3
4,343,487	-		Psyr_3656	0.31	+0.4
4,343,487	-		Psyr_3656	0.31	-0.5
4,343,741	+		Psyr_3656	0.45	-0.7
4,343,741	+		Psyr_3656	0.45	+1.3
4,343,741	+		Psyr_3656	0.45	+0.9
4,343,742	-		Psyr_3656	0.45	+1.2
4,343,742	-		Psyr_3656	0.45	-1.5
4,343,744	+		Psyr_3656	0.45	+0.7
4,343,744	+		Psyr_3656	0.45	-0.8
4,343,745	-		Psyr_3656	0.45	-0.7
4,343,750	+		Psyr_3656	0.45	+1.2
4,343,751	-		Psyr_3656	0.45	-0.4
4,343,751	-		Psyr_3656	0.45	+0.1