Experiment: library passed through aphids in food, 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3307 and Psyr_3308 overlap by 10 nucleotides Psyr_3308 and Psyr_3309 overlap by 1 nucleotides
Psyr_3307: Psyr_3307 - Glycosyl transferase, group 1, at 3,958,098 to 3,959,315
_3307
Psyr_3308: Psyr_3308 - Glycosyl transferase, group 1, at 3,959,306 to 3,960,406
_3308
Psyr_3309: Psyr_3309 - membrane protein, putative, at 3,960,406 to 3,961,821
_3309
Position (kb)
3959
3960
3961 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3958.317 kb on - strand, within Psyr_3307 at 3958.446 kb on + strand, within Psyr_3307 at 3958.446 kb on + strand, within Psyr_3307 at 3958.446 kb on + strand, within Psyr_3307 at 3958.446 kb on + strand, within Psyr_3307 at 3958.446 kb on + strand, within Psyr_3307 at 3958.446 kb on + strand, within Psyr_3307 at 3958.447 kb on - strand, within Psyr_3307 at 3958.447 kb on - strand, within Psyr_3307 at 3958.447 kb on - strand, within Psyr_3307 at 3958.447 kb on - strand, within Psyr_3307 at 3958.447 kb on - strand, within Psyr_3307 at 3958.447 kb on - strand, within Psyr_3307 at 3958.447 kb on - strand, within Psyr_3307 at 3958.447 kb on - strand, within Psyr_3307 at 3958.447 kb on - strand, within Psyr_3307 at 3958.447 kb on - strand, within Psyr_3307 at 3958.447 kb on - strand, within Psyr_3307 at 3958.542 kb on + strand, within Psyr_3307 at 3958.542 kb on + strand, within Psyr_3307 at 3958.581 kb on + strand, within Psyr_3307 at 3958.582 kb on - strand, within Psyr_3307 at 3958.669 kb on + strand, within Psyr_3307 at 3958.670 kb on - strand, within Psyr_3307 at 3958.701 kb on + strand, within Psyr_3307 at 3958.701 kb on + strand, within Psyr_3307 at 3958.701 kb on + strand, within Psyr_3307 at 3958.702 kb on - strand, within Psyr_3307 at 3958.702 kb on - strand, within Psyr_3307 at 3958.702 kb on - strand, within Psyr_3307 at 3958.702 kb on - strand, within Psyr_3307 at 3958.702 kb on - strand, within Psyr_3307 at 3958.728 kb on + strand, within Psyr_3307 at 3958.729 kb on - strand, within Psyr_3307 at 3958.729 kb on - strand, within Psyr_3307 at 3958.732 kb on - strand, within Psyr_3307 at 3958.732 kb on - strand, within Psyr_3307 at 3958.785 kb on + strand, within Psyr_3307 at 3958.785 kb on + strand, within Psyr_3307 at 3958.785 kb on + strand, within Psyr_3307 at 3958.785 kb on + strand, within Psyr_3307 at 3958.785 kb on + strand, within Psyr_3307 at 3958.786 kb on - strand, within Psyr_3307 at 3958.786 kb on - strand, within Psyr_3307 at 3958.786 kb on - strand, within Psyr_3307 at 3958.786 kb on - strand, within Psyr_3307 at 3958.786 kb on - strand, within Psyr_3307 at 3958.786 kb on - strand, within Psyr_3307 at 3958.791 kb on + strand, within Psyr_3307 at 3958.867 kb on + strand, within Psyr_3307 at 3958.867 kb on + strand, within Psyr_3307 at 3958.867 kb on + strand, within Psyr_3307 at 3958.867 kb on + strand, within Psyr_3307 at 3958.868 kb on - strand, within Psyr_3307 at 3958.868 kb on - strand, within Psyr_3307 at 3958.868 kb on - strand, within Psyr_3307 at 3958.868 kb on - strand, within Psyr_3307 at 3958.868 kb on - strand, within Psyr_3307 at 3958.868 kb on - strand, within Psyr_3307 at 3959.115 kb on + strand, within Psyr_3307 at 3959.115 kb on + strand, within Psyr_3307 at 3959.116 kb on - strand, within Psyr_3307 at 3959.116 kb on - strand, within Psyr_3307 at 3959.116 kb on - strand, within Psyr_3307 at 3959.163 kb on + strand, within Psyr_3307 at 3959.164 kb on - strand, within Psyr_3307 at 3959.172 kb on - strand, within Psyr_3307 at 3959.214 kb on + strand at 3959.215 kb on - strand at 3959.215 kb on - strand at 3959.268 kb on + strand at 3959.268 kb on + strand at 3959.268 kb on + strand at 3959.268 kb on + strand at 3959.268 kb on + strand at 3959.269 kb on - strand at 3959.269 kb on - strand at 3959.269 kb on - strand at 3959.269 kb on - strand at 3959.269 kb on - strand at 3959.311 kb on + strand at 3959.312 kb on - strand at 3959.313 kb on + strand at 3959.313 kb on + strand at 3959.313 kb on + strand at 3959.313 kb on + strand at 3959.314 kb on - strand at 3959.576 kb on + strand, within Psyr_3308 at 3959.577 kb on - strand, within Psyr_3308 at 3959.577 kb on - strand, within Psyr_3308 at 3959.577 kb on - strand, within Psyr_3308 at 3959.577 kb on - strand, within Psyr_3308 at 3959.577 kb on - strand, within Psyr_3308 at 3959.587 kb on + strand, within Psyr_3308 at 3959.628 kb on + strand, within Psyr_3308 at 3959.628 kb on + strand, within Psyr_3308 at 3959.628 kb on + strand, within Psyr_3308 at 3959.628 kb on + strand, within Psyr_3308 at 3959.628 kb on + strand, within Psyr_3308 at 3959.628 kb on + strand, within Psyr_3308 at 3959.628 kb on + strand, within Psyr_3308 at 3959.628 kb on + strand, within Psyr_3308 at 3959.628 kb on + strand, within Psyr_3308 at 3959.628 kb on + strand, within Psyr_3308 at 3959.628 kb on + strand, within Psyr_3308 at 3959.629 kb on - strand, within Psyr_3308 at 3959.629 kb on - strand, within Psyr_3308 at 3959.629 kb on - strand, within Psyr_3308 at 3959.629 kb on - strand, within Psyr_3308 at 3959.629 kb on - strand, within Psyr_3308 at 3959.629 kb on - strand, within Psyr_3308 at 3959.629 kb on - strand, within Psyr_3308 at 3959.629 kb on - strand, within Psyr_3308 at 3959.629 kb on - strand, within Psyr_3308 at 3959.633 kb on + strand, within Psyr_3308 at 3959.634 kb on - strand, within Psyr_3308 at 3959.637 kb on + strand, within Psyr_3308 at 3959.637 kb on + strand, within Psyr_3308 at 3959.637 kb on + strand, within Psyr_3308 at 3959.637 kb on + strand, within Psyr_3308 at 3959.638 kb on - strand, within Psyr_3308 at 3959.638 kb on - strand, within Psyr_3308 at 3959.638 kb on - strand, within Psyr_3308 at 3959.724 kb on - strand, within Psyr_3308 at 3959.803 kb on + strand, within Psyr_3308 at 3959.803 kb on + strand, within Psyr_3308 at 3959.803 kb on + strand, within Psyr_3308 at 3959.803 kb on + strand, within Psyr_3308 at 3959.804 kb on - strand, within Psyr_3308 at 3959.804 kb on - strand, within Psyr_3308 at 3959.804 kb on - strand, within Psyr_3308 at 3959.804 kb on - strand, within Psyr_3308 at 3959.804 kb on - strand, within Psyr_3308 at 3959.838 kb on + strand, within Psyr_3308 at 3960.010 kb on - strand, within Psyr_3308 at 3960.054 kb on + strand, within Psyr_3308 at 3960.446 kb on + strand at 3960.584 kb on - strand, within Psyr_3309 at 3960.652 kb on + strand, within Psyr_3309 at 3960.652 kb on + strand, within Psyr_3309 at 3960.653 kb on - strand, within Psyr_3309 at 3960.653 kb on - strand, within Psyr_3309 at 3960.806 kb on + strand, within Psyr_3309 at 3960.938 kb on - strand, within Psyr_3309 at 3960.991 kb on + strand, within Psyr_3309 at 3961.318 kb on + strand, within Psyr_3309 at 3961.319 kb on - strand, within Psyr_3309 at 3961.394 kb on - strand, within Psyr_3309 at 3961.394 kb on - strand, within Psyr_3309
Per-strain Table
Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours remove 3,958,317 - Psyr_3307 0.18 -1.3 3,958,446 + Psyr_3307 0.29 -1.7 3,958,446 + Psyr_3307 0.29 -0.5 3,958,446 + Psyr_3307 0.29 -1.6 3,958,446 + Psyr_3307 0.29 -1.3 3,958,446 + Psyr_3307 0.29 -1.8 3,958,446 + Psyr_3307 0.29 -2.0 3,958,447 - Psyr_3307 0.29 -1.4 3,958,447 - Psyr_3307 0.29 -2.9 3,958,447 - Psyr_3307 0.29 -2.7 3,958,447 - Psyr_3307 0.29 +0.2 3,958,447 - Psyr_3307 0.29 -1.3 3,958,447 - Psyr_3307 0.29 -3.0 3,958,447 - Psyr_3307 0.29 -1.6 3,958,447 - Psyr_3307 0.29 -1.1 3,958,447 - Psyr_3307 0.29 -0.8 3,958,447 - Psyr_3307 0.29 -0.3 3,958,447 - Psyr_3307 0.29 -1.7 3,958,542 + Psyr_3307 0.36 -0.8 3,958,542 + Psyr_3307 0.36 -1.9 3,958,581 + Psyr_3307 0.40 -2.2 3,958,582 - Psyr_3307 0.40 -1.4 3,958,669 + Psyr_3307 0.47 -2.4 3,958,670 - Psyr_3307 0.47 +1.2 3,958,701 + Psyr_3307 0.50 -0.6 3,958,701 + Psyr_3307 0.50 -1.2 3,958,701 + Psyr_3307 0.50 +1.0 3,958,702 - Psyr_3307 0.50 -0.9 3,958,702 - Psyr_3307 0.50 -2.1 3,958,702 - Psyr_3307 0.50 -3.5 3,958,702 - Psyr_3307 0.50 -2.0 3,958,702 - Psyr_3307 0.50 +0.6 3,958,728 + Psyr_3307 0.52 -1.6 3,958,729 - Psyr_3307 0.52 -1.2 3,958,729 - Psyr_3307 0.52 -1.9 3,958,732 - Psyr_3307 0.52 -0.8 3,958,732 - Psyr_3307 0.52 -2.1 3,958,785 + Psyr_3307 0.56 -1.5 3,958,785 + Psyr_3307 0.56 -2.1 3,958,785 + Psyr_3307 0.56 -2.4 3,958,785 + Psyr_3307 0.56 -1.9 3,958,785 + Psyr_3307 0.56 -2.0 3,958,786 - Psyr_3307 0.56 -0.8 3,958,786 - Psyr_3307 0.56 -1.9 3,958,786 - Psyr_3307 0.56 -0.7 3,958,786 - Psyr_3307 0.56 -1.6 3,958,786 - Psyr_3307 0.56 -2.7 3,958,786 - Psyr_3307 0.56 -2.2 3,958,791 + Psyr_3307 0.57 -3.1 3,958,867 + Psyr_3307 0.63 -1.2 3,958,867 + Psyr_3307 0.63 -2.7 3,958,867 + Psyr_3307 0.63 -2.1 3,958,867 + Psyr_3307 0.63 -1.8 3,958,868 - Psyr_3307 0.63 -0.3 3,958,868 - Psyr_3307 0.63 -1.6 3,958,868 - Psyr_3307 0.63 -0.5 3,958,868 - Psyr_3307 0.63 -1.8 3,958,868 - Psyr_3307 0.63 -2.6 3,958,868 - Psyr_3307 0.63 -1.8 3,959,115 + Psyr_3307 0.83 -3.2 3,959,115 + Psyr_3307 0.83 -2.1 3,959,116 - Psyr_3307 0.84 -1.4 3,959,116 - Psyr_3307 0.84 -0.7 3,959,116 - Psyr_3307 0.84 -0.7 3,959,163 + Psyr_3307 0.87 -0.3 3,959,164 - Psyr_3307 0.88 -0.3 3,959,172 - Psyr_3307 0.88 -2.5 3,959,214 + -1.8 3,959,215 - -1.1 3,959,215 - -0.6 3,959,268 + -3.9 3,959,268 + -2.4 3,959,268 + -0.4 3,959,268 + -1.9 3,959,268 + -2.1 3,959,269 - -3.5 3,959,269 - -0.8 3,959,269 - -2.6 3,959,269 - -1.2 3,959,269 - -2.7 3,959,311 + -2.7 3,959,312 - -3.2 3,959,313 + -3.7 3,959,313 + -1.6 3,959,313 + +0.8 3,959,313 + -2.6 3,959,314 - -1.6 3,959,576 + Psyr_3308 0.25 -3.1 3,959,577 - Psyr_3308 0.25 -0.5 3,959,577 - Psyr_3308 0.25 -0.7 3,959,577 - Psyr_3308 0.25 -3.1 3,959,577 - Psyr_3308 0.25 -2.4 3,959,577 - Psyr_3308 0.25 -0.2 3,959,587 + Psyr_3308 0.26 -2.2 3,959,628 + Psyr_3308 0.29 -1.7 3,959,628 + Psyr_3308 0.29 -0.7 3,959,628 + Psyr_3308 0.29 -3.6 3,959,628 + Psyr_3308 0.29 -2.3 3,959,628 + Psyr_3308 0.29 +0.2 3,959,628 + Psyr_3308 0.29 -0.2 3,959,628 + Psyr_3308 0.29 -1.0 3,959,628 + Psyr_3308 0.29 -2.2 3,959,628 + Psyr_3308 0.29 -2.3 3,959,628 + Psyr_3308 0.29 -3.1 3,959,628 + Psyr_3308 0.29 -0.7 3,959,629 - Psyr_3308 0.29 -0.3 3,959,629 - Psyr_3308 0.29 -1.0 3,959,629 - Psyr_3308 0.29 -1.3 3,959,629 - Psyr_3308 0.29 -1.2 3,959,629 - Psyr_3308 0.29 -1.8 3,959,629 - Psyr_3308 0.29 -2.6 3,959,629 - Psyr_3308 0.29 +1.3 3,959,629 - Psyr_3308 0.29 -1.6 3,959,629 - Psyr_3308 0.29 +0.0 3,959,633 + Psyr_3308 0.30 -0.8 3,959,634 - Psyr_3308 0.30 -1.6 3,959,637 + Psyr_3308 0.30 -1.5 3,959,637 + Psyr_3308 0.30 +0.2 3,959,637 + Psyr_3308 0.30 +0.3 3,959,637 + Psyr_3308 0.30 -3.3 3,959,638 - Psyr_3308 0.30 -0.3 3,959,638 - Psyr_3308 0.30 -0.6 3,959,638 - Psyr_3308 0.30 -2.7 3,959,724 - Psyr_3308 0.38 -1.5 3,959,803 + Psyr_3308 0.45 -1.9 3,959,803 + Psyr_3308 0.45 -1.8 3,959,803 + Psyr_3308 0.45 -2.0 3,959,803 + Psyr_3308 0.45 -1.8 3,959,804 - Psyr_3308 0.45 -1.1 3,959,804 - Psyr_3308 0.45 -0.4 3,959,804 - Psyr_3308 0.45 -1.9 3,959,804 - Psyr_3308 0.45 -1.3 3,959,804 - Psyr_3308 0.45 -2.6 3,959,838 + Psyr_3308 0.48 -2.1 3,960,010 - Psyr_3308 0.64 -3.0 3,960,054 + Psyr_3308 0.68 -0.8 3,960,446 + -3.0 3,960,584 - Psyr_3309 0.13 -0.8 3,960,652 + Psyr_3309 0.17 -2.2 3,960,652 + Psyr_3309 0.17 +0.6 3,960,653 - Psyr_3309 0.17 -0.1 3,960,653 - Psyr_3309 0.17 -3.6 3,960,806 + Psyr_3309 0.28 -0.9 3,960,938 - Psyr_3309 0.38 -2.3 3,960,991 + Psyr_3309 0.41 -2.2 3,961,318 + Psyr_3309 0.64 -2.3 3,961,319 - Psyr_3309 0.64 -3.1 3,961,394 - Psyr_3309 0.70 -1.2 3,961,394 - Psyr_3309 0.70 +0.0
Or see this region's nucleotide sequence