Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2289

Experiment: library passed through aphids in food, 72 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2287 and Psyr_2288 are separated by 93 nucleotidesPsyr_2288 and Psyr_2289 are separated by 1 nucleotidesPsyr_2289 and Psyr_2290 are separated by 281 nucleotides Psyr_2287: Psyr_2287 - outer membrane transport energization protein TonB, at 2,657,321 to 2,658,154 _2287 Psyr_2288: Psyr_2288 - outer membrane transport energization protein ExbB, at 2,658,248 to 2,659,015 _2288 Psyr_2289: Psyr_2289 - outer membrane transport energization protein ExbD, at 2,659,017 to 2,659,418 _2289 Psyr_2290: Psyr_2290 - TonB-dependent receptor:TonB-dependent receptor, at 2,659,700 to 2,662,102 _2290 Position (kb) 2659 2660Strain fitness (log2 ratio) -2 -1 0 1 2at 2658.170 kb on + strandat 2658.170 kb on + strandat 2658.216 kb on - strandat 2658.216 kb on - strandat 2658.845 kb on + strand, within Psyr_2288at 2658.845 kb on + strand, within Psyr_2288at 2658.845 kb on + strand, within Psyr_2288at 2658.846 kb on - strand, within Psyr_2288at 2658.846 kb on - strand, within Psyr_2288at 2658.851 kb on + strand, within Psyr_2288at 2658.851 kb on + strand, within Psyr_2288at 2658.851 kb on + strand, within Psyr_2288at 2658.852 kb on - strand, within Psyr_2288at 2658.852 kb on - strand, within Psyr_2288at 2658.911 kb on + strand, within Psyr_2288at 2658.911 kb on + strand, within Psyr_2288at 2658.911 kb on + strand, within Psyr_2288at 2658.911 kb on + strand, within Psyr_2288at 2658.911 kb on + strand, within Psyr_2288at 2658.911 kb on + strand, within Psyr_2288at 2658.911 kb on + strand, within Psyr_2288at 2658.912 kb on - strand, within Psyr_2288at 2658.912 kb on - strand, within Psyr_2288at 2658.912 kb on - strand, within Psyr_2288at 2658.912 kb on - strand, within Psyr_2288at 2658.912 kb on - strand, within Psyr_2288at 2659.079 kb on - strand, within Psyr_2289at 2659.389 kb on - strandat 2659.417 kb on - strandat 2659.417 kb on - strandat 2659.417 kb on - strandat 2659.427 kb on + strandat 2659.428 kb on - strandat 2659.434 kb on + strandat 2659.434 kb on + strandat 2659.435 kb on - strandat 2659.435 kb on - strandat 2659.603 kb on - strandat 2659.615 kb on + strandat 2659.722 kb on + strandat 2659.722 kb on + strandat 2660.092 kb on + strand, within Psyr_2290at 2660.093 kb on - strand, within Psyr_2290at 2660.093 kb on - strand, within Psyr_2290at 2660.216 kb on + strand, within Psyr_2290at 2660.303 kb on + strand, within Psyr_2290at 2660.358 kb on + strand, within Psyr_2290at 2660.359 kb on - strand, within Psyr_2290at 2660.408 kb on + strand, within Psyr_2290at 2660.409 kb on - strand, within Psyr_2290at 2660.409 kb on - strand, within Psyr_2290

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Per-strain Table

Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours
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2,658,170 + +1.0
2,658,170 + -1.8
2,658,216 - +1.4
2,658,216 - -0.1
2,658,845 + Psyr_2288 0.78 -0.7
2,658,845 + Psyr_2288 0.78 -0.6
2,658,845 + Psyr_2288 0.78 +1.9
2,658,846 - Psyr_2288 0.78 +0.1
2,658,846 - Psyr_2288 0.78 -2.0
2,658,851 + Psyr_2288 0.79 +0.3
2,658,851 + Psyr_2288 0.79 +1.1
2,658,851 + Psyr_2288 0.79 +0.8
2,658,852 - Psyr_2288 0.79 +0.6
2,658,852 - Psyr_2288 0.79 +1.0
2,658,911 + Psyr_2288 0.86 -0.2
2,658,911 + Psyr_2288 0.86 +2.0
2,658,911 + Psyr_2288 0.86 +1.7
2,658,911 + Psyr_2288 0.86 +0.1
2,658,911 + Psyr_2288 0.86 +0.1
2,658,911 + Psyr_2288 0.86 -1.6
2,658,911 + Psyr_2288 0.86 +0.3
2,658,912 - Psyr_2288 0.86 +0.5
2,658,912 - Psyr_2288 0.86 +1.0
2,658,912 - Psyr_2288 0.86 +0.1
2,658,912 - Psyr_2288 0.86 -0.3
2,658,912 - Psyr_2288 0.86 -2.7
2,659,079 - Psyr_2289 0.15 -0.1
2,659,389 - +0.1
2,659,417 - -0.6
2,659,417 - +0.9
2,659,417 - -0.2
2,659,427 + -0.8
2,659,428 - +0.4
2,659,434 + +0.5
2,659,434 + +1.1
2,659,435 - -1.7
2,659,435 - +0.9
2,659,603 - +0.4
2,659,615 + -0.2
2,659,722 + +0.3
2,659,722 + -2.7
2,660,092 + Psyr_2290 0.16 +0.8
2,660,093 - Psyr_2290 0.16 -1.5
2,660,093 - Psyr_2290 0.16 +1.0
2,660,216 + Psyr_2290 0.21 +0.5
2,660,303 + Psyr_2290 0.25 -2.0
2,660,358 + Psyr_2290 0.27 -0.9
2,660,359 - Psyr_2290 0.27 -0.9
2,660,408 + Psyr_2290 0.29 -0.2
2,660,409 - Psyr_2290 0.30 -1.4
2,660,409 - Psyr_2290 0.30 -0.6

Or see this region's nucleotide sequence