Experiment: library passed through aphids in food, 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2287 and Psyr_2288 are separated by 93 nucleotides Psyr_2288 and Psyr_2289 are separated by 1 nucleotides Psyr_2289 and Psyr_2290 are separated by 281 nucleotides
Psyr_2287: Psyr_2287 - outer membrane transport energization protein TonB, at 2,657,321 to 2,658,154
_2287
Psyr_2288: Psyr_2288 - outer membrane transport energization protein ExbB, at 2,658,248 to 2,659,015
_2288
Psyr_2289: Psyr_2289 - outer membrane transport energization protein ExbD, at 2,659,017 to 2,659,418
_2289
Psyr_2290: Psyr_2290 - TonB-dependent receptor:TonB-dependent receptor, at 2,659,700 to 2,662,102
_2290
Position (kb)
2659
2660 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2658.170 kb on + strand at 2658.170 kb on + strand at 2658.216 kb on - strand at 2658.216 kb on - strand at 2658.845 kb on + strand, within Psyr_2288 at 2658.845 kb on + strand, within Psyr_2288 at 2658.845 kb on + strand, within Psyr_2288 at 2658.846 kb on - strand, within Psyr_2288 at 2658.846 kb on - strand, within Psyr_2288 at 2658.851 kb on + strand, within Psyr_2288 at 2658.851 kb on + strand, within Psyr_2288 at 2658.851 kb on + strand, within Psyr_2288 at 2658.852 kb on - strand, within Psyr_2288 at 2658.852 kb on - strand, within Psyr_2288 at 2658.911 kb on + strand, within Psyr_2288 at 2658.911 kb on + strand, within Psyr_2288 at 2658.911 kb on + strand, within Psyr_2288 at 2658.911 kb on + strand, within Psyr_2288 at 2658.911 kb on + strand, within Psyr_2288 at 2658.911 kb on + strand, within Psyr_2288 at 2658.911 kb on + strand, within Psyr_2288 at 2658.912 kb on - strand, within Psyr_2288 at 2658.912 kb on - strand, within Psyr_2288 at 2658.912 kb on - strand, within Psyr_2288 at 2658.912 kb on - strand, within Psyr_2288 at 2658.912 kb on - strand, within Psyr_2288 at 2659.079 kb on - strand, within Psyr_2289 at 2659.389 kb on - strand at 2659.417 kb on - strand at 2659.417 kb on - strand at 2659.417 kb on - strand at 2659.427 kb on + strand at 2659.428 kb on - strand at 2659.434 kb on + strand at 2659.434 kb on + strand at 2659.435 kb on - strand at 2659.435 kb on - strand at 2659.603 kb on - strand at 2659.615 kb on + strand at 2659.722 kb on + strand at 2659.722 kb on + strand at 2660.092 kb on + strand, within Psyr_2290 at 2660.093 kb on - strand, within Psyr_2290 at 2660.093 kb on - strand, within Psyr_2290 at 2660.216 kb on + strand, within Psyr_2290 at 2660.303 kb on + strand, within Psyr_2290 at 2660.358 kb on + strand, within Psyr_2290 at 2660.359 kb on - strand, within Psyr_2290 at 2660.408 kb on + strand, within Psyr_2290 at 2660.409 kb on - strand, within Psyr_2290 at 2660.409 kb on - strand, within Psyr_2290
Per-strain Table
Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours remove 2,658,170 + +1.0 2,658,170 + -1.8 2,658,216 - +1.4 2,658,216 - -0.1 2,658,845 + Psyr_2288 0.78 -0.7 2,658,845 + Psyr_2288 0.78 -0.6 2,658,845 + Psyr_2288 0.78 +1.9 2,658,846 - Psyr_2288 0.78 +0.1 2,658,846 - Psyr_2288 0.78 -2.0 2,658,851 + Psyr_2288 0.79 +0.3 2,658,851 + Psyr_2288 0.79 +1.1 2,658,851 + Psyr_2288 0.79 +0.8 2,658,852 - Psyr_2288 0.79 +0.6 2,658,852 - Psyr_2288 0.79 +1.0 2,658,911 + Psyr_2288 0.86 -0.2 2,658,911 + Psyr_2288 0.86 +2.0 2,658,911 + Psyr_2288 0.86 +1.7 2,658,911 + Psyr_2288 0.86 +0.1 2,658,911 + Psyr_2288 0.86 +0.1 2,658,911 + Psyr_2288 0.86 -1.6 2,658,911 + Psyr_2288 0.86 +0.3 2,658,912 - Psyr_2288 0.86 +0.5 2,658,912 - Psyr_2288 0.86 +1.0 2,658,912 - Psyr_2288 0.86 +0.1 2,658,912 - Psyr_2288 0.86 -0.3 2,658,912 - Psyr_2288 0.86 -2.7 2,659,079 - Psyr_2289 0.15 -0.1 2,659,389 - +0.1 2,659,417 - -0.6 2,659,417 - +0.9 2,659,417 - -0.2 2,659,427 + -0.8 2,659,428 - +0.4 2,659,434 + +0.5 2,659,434 + +1.1 2,659,435 - -1.7 2,659,435 - +0.9 2,659,603 - +0.4 2,659,615 + -0.2 2,659,722 + +0.3 2,659,722 + -2.7 2,660,092 + Psyr_2290 0.16 +0.8 2,660,093 - Psyr_2290 0.16 -1.5 2,660,093 - Psyr_2290 0.16 +1.0 2,660,216 + Psyr_2290 0.21 +0.5 2,660,303 + Psyr_2290 0.25 -2.0 2,660,358 + Psyr_2290 0.27 -0.9 2,660,359 - Psyr_2290 0.27 -0.9 2,660,408 + Psyr_2290 0.29 -0.2 2,660,409 - Psyr_2290 0.30 -1.4 2,660,409 - Psyr_2290 0.30 -0.6
Or see this region's nucleotide sequence