Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1514

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
1,699,147	+		Psyr_1513	0.12	-0.3
1,699,148	-		Psyr_1513	0.12	-0.0
1,699,264	+		Psyr_1513	0.23	-0.1
1,699,264	+		Psyr_1513	0.23	+0.2
1,699,264	+		Psyr_1513	0.23	+1.2
1,699,265	-		Psyr_1513	0.23	+0.7
1,699,265	-		Psyr_1513	0.23	+0.9
1,699,265	-		Psyr_1513	0.23	-1.0
1,699,265	-		Psyr_1513	0.23	-2.0
1,699,265	-		Psyr_1513	0.23	+0.1
1,699,351	+		Psyr_1513	0.31	+3.5
1,699,439	+		Psyr_1513	0.39	-0.4
1,699,439	+		Psyr_1513	0.39	+1.3
1,699,439	+				+1.1
1,699,439	+		Psyr_1513	0.39	-1.0
1,699,440	-		Psyr_1513	0.39	-0.5
1,699,440	-		Psyr_1513	0.39	-0.4
1,699,440	-		Psyr_1513	0.39	+0.4
1,699,440	-		Psyr_1513	0.39	-0.4
1,699,494	-		Psyr_1513	0.44	-0.2
1,699,560	+		Psyr_1513	0.50	-0.9
1,699,561	-		Psyr_1513	0.50	-0.8
1,699,561	-		Psyr_1513	0.50	-1.1
1,699,660	+		Psyr_1513	0.59	+2.6
1,699,661	-		Psyr_1513	0.59	+0.8
1,699,673	+		Psyr_1513	0.61	-1.0
1,699,674	-		Psyr_1513	0.61	+1.9
1,699,674	-		Psyr_1513	0.61	-0.8
1,699,674	-		Psyr_1513	0.61	-0.0
1,699,674	-		Psyr_1513	0.61	-0.9
1,699,842	+		Psyr_1513	0.76	+2.1
1,699,888	+		Psyr_1513	0.80	-0.3
1,699,888	+		Psyr_1513	0.80	-0.2
1,699,895	+		Psyr_1513	0.81	-0.0
1,699,895	+		Psyr_1513	0.81	-0.9
1,699,943	+		Psyr_1513	0.85	+1.2
1,699,943	+		Psyr_1513	0.85	+0.2
1,699,943	+				+0.6
1,699,943	+		Psyr_1513	0.85	-1.7
1,699,944	-		Psyr_1513	0.85	+2.1
1,699,944	-		Psyr_1513	0.85	-0.2
1,699,944	-		Psyr_1513	0.85	+1.0
1,699,944	-		Psyr_1513	0.85	-2.3
1,699,944	-		Psyr_1513	0.85	+2.7
1,699,956	+		Psyr_1513	0.86	-0.4
1,699,956	+		Psyr_1513	0.86	+0.4
1,700,054	+				-0.9
1,700,054	+				+0.6
1,700,065	+				+0.4
1,700,065	+				-0.9
1,700,065	+				+0.6
1,700,065	+				-0.5
1,700,065	+				+0.6
1,700,065	+				-0.6
1,700,065	+				-0.0
1,700,065	+				+2.6
1,700,066	-				-0.0
1,700,066	-				+1.5
1,700,066	-				+0.3
1,700,066	-				+1.0
1,700,066	-				-0.3
1,700,066	-				+0.9
1,700,066	-				-0.2
1,700,066	-				+0.1
1,700,094	+				-0.9
1,700,095	-				-1.4
1,700,095	-				-2.9
1,700,139	+				-0.6
1,700,139	+				+0.2
1,700,139	+				-1.6
1,700,139	+				+0.7
1,700,139	+				-0.3
1,700,139	+				+0.5
1,700,139	+				+1.2
1,700,139	+				+0.1
1,700,139	+				-2.0
1,700,139	+				+1.9
1,700,139	+				+0.0
1,700,139	+				+1.7
1,700,139	+				+1.8
1,700,140	-				-0.3
1,700,140	-				-0.1
1,700,140	-				-0.3
1,700,140	-				-0.6
1,700,140	-				+0.2
1,700,140	-				+0.3
1,700,140	-				+2.4
1,700,140	-				-2.1
1,700,140	-				-0.5
1,700,140	-				-0.7
1,700,140	-				-0.0
1,700,200	+				+1.0
1,700,200	+				+0.6
1,700,200	+				+0.6
1,700,201	-				+1.2
1,700,201	-				-1.9
1,700,201	-				-0.6
1,700,204	+				-0.4
1,700,204	+				+0.9
1,700,204	+				-0.1
1,700,205	-				+1.0
1,700,205	-				-2.2
1,700,366	+		Psyr_1514	0.17	-0.0
1,700,366	+		Psyr_1514	0.17	-1.2
1,700,449	+		Psyr_1514	0.22	+0.3
1,700,516	-		Psyr_1514	0.26	-0.0
1,700,554	+		Psyr_1514	0.28	-1.5
1,700,554	+		Psyr_1514	0.28	+0.6
1,700,554	+		Psyr_1514	0.28	-0.9
1,700,555	-		Psyr_1514	0.28	+1.3
1,700,555	-		Psyr_1514	0.28	-0.3
1,700,555	-		Psyr_1514	0.28	+0.1
1,700,592	-		Psyr_1514	0.31	+0.5
1,700,688	+		Psyr_1514	0.36	+1.5
1,700,688	+		Psyr_1514	0.36	-1.5
1,700,688	+		Psyr_1514	0.36	-2.0
1,700,688	+		Psyr_1514	0.36	+0.4
1,700,688	+		Psyr_1514	0.36	+0.3
1,700,688	+		Psyr_1514	0.36	+0.2
1,700,689	-		Psyr_1514	0.37	-0.3
1,700,689	-		Psyr_1514	0.37	-1.3
1,700,689	-		Psyr_1514	0.37	-1.0
1,700,696	+		Psyr_1514	0.37	-1.4
1,700,696	+		Psyr_1514	0.37	-2.0
1,700,697	-		Psyr_1514	0.37	-1.6
1,700,697	-		Psyr_1514	0.37	+0.5
1,700,697	-		Psyr_1514	0.37	-1.2
1,700,725	+		Psyr_1514	0.39	-0.1
1,700,725	+		Psyr_1514	0.39	-1.9
1,700,812	+		Psyr_1514	0.44	+0.4
1,700,900	+		Psyr_1514	0.49	+2.7
1,700,900	+		Psyr_1514	0.49	-0.1
1,700,900	+		Psyr_1514	0.49	-1.1
1,700,900	+		Psyr_1514	0.49	+1.0
1,700,901	-		Psyr_1514	0.50	-0.6
1,701,000	+		Psyr_1514	0.56	+0.8
1,701,000	+		Psyr_1514	0.56	-0.9
1,701,000	+		Psyr_1514	0.56	+0.4
1,701,000	+		Psyr_1514	0.56	+1.1
1,701,001	-		Psyr_1514	0.56	-0.9
1,701,020	+		Psyr_1514	0.57	-0.3
1,701,020	+		Psyr_1514	0.57	-2.4
1,701,051	-		Psyr_1514	0.59	-0.7
1,701,126	+		Psyr_1514	0.63	+1.9
1,701,127	-		Psyr_1514	0.63	+0.3
1,701,127	-		Psyr_1514	0.63	+0.6
1,701,130	-		Psyr_1514	0.64	-0.0
1,701,130	-		Psyr_1514	0.64	-0.1
1,701,130	-		Psyr_1514	0.64	-0.5
1,701,246	+		Psyr_1514	0.71	-0.0
1,701,246	+		Psyr_1514	0.71	-1.1
1,701,247	-		Psyr_1514	0.71	-0.5
1,701,247	-		Psyr_1514	0.71	-0.6
1,701,247	-		Psyr_1514	0.71	+0.7
1,701,247	-		Psyr_1514	0.71	+0.2
1,701,314	-		Psyr_1514	0.75	+0.0
1,701,314	-		Psyr_1514	0.75	-0.8
1,701,340	+		Psyr_1514	0.76	-0.3
1,701,347	+		Psyr_1514	0.77	-0.4
1,701,347	+		Psyr_1514	0.77	-1.3
1,701,348	-		Psyr_1514	0.77	+0.5
1,701,348	-		Psyr_1514	0.77	+1.0
1,701,349	+		Psyr_1514	0.77	-1.3
1,701,349	+		Psyr_1514	0.77	+1.6
1,701,349	+		Psyr_1514	0.77	-0.7
1,701,349	+		Psyr_1514	0.77	-2.5
1,701,349	+		Psyr_1514	0.77	+0.5
1,701,350	-		Psyr_1514	0.77	+1.2
1,701,350	-		Psyr_1514	0.77	+0.6
1,701,350	-		Psyr_1514	0.77	-1.8
1,701,350	-		Psyr_1514	0.77	-0.1
1,701,350	-		Psyr_1514	0.77	-0.6
1,701,350	-		Psyr_1514	0.77	-0.1
1,701,350	-		Psyr_1514	0.77	-1.0
1,701,454	+		Psyr_1514	0.83	+0.5
1,701,454	+		Psyr_1514	0.83	+2.8
1,701,455	-		Psyr_1514	0.83	-1.1
1,701,455	-		Psyr_1514	0.83	-0.1
1,701,455	-		Psyr_1514	0.83	-0.4
1,701,468	+		Psyr_1514	0.84	-0.9
1,701,468	+		Psyr_1514	0.84	-0.1
1,701,468	+		Psyr_1514	0.84	-0.9
1,701,468	+		Psyr_1514	0.84	+1.5
1,701,469	-		Psyr_1514	0.84	-0.2
1,701,469	-		Psyr_1514	0.84	-1.1
1,701,469	-		Psyr_1514	0.84	+0.4
1,701,469	-		Psyr_1514	0.84	+0.1
1,701,469	-		Psyr_1514	0.84	-1.1
1,701,534	-		Psyr_1514	0.88	-1.7
1,701,856	+		Psyr_1515	0.22	-0.6
1,701,856	+		Psyr_1515	0.22	+0.4
1,701,857	-		Psyr_1515	0.23	-3.1
1,701,914	-		Psyr_1515	0.32	+1.0
1,701,914	-		Psyr_1515	0.32	-2.2
1,701,914	-		Psyr_1515	0.32	-1.8
1,701,942	+		Psyr_1515	0.37	-0.2
1,701,982	+		Psyr_1515	0.43	+0.2
1,701,993	-		Psyr_1515	0.45	-3.5
1,701,993	-		Psyr_1515	0.45	-0.4
1,701,993	-		Psyr_1515	0.45	-1.5
1,701,993	-		Psyr_1515	0.45	-0.5
1,702,073	+		Psyr_1515	0.58	+1.5
1,702,073	+		Psyr_1515	0.58	-0.3
1,702,086	+		Psyr_1515	0.61	-1.1
1,702,282	+				+0.4
1,702,282	+				+0.3
1,702,282	+				+0.9
1,702,283	-				+0.1
1,702,283	-				+0.6
1,702,283	-				+0.1
1,702,323	+				+0.4
1,702,323	+				+0.1
1,702,323	+				-0.0
1,702,323	+				+0.5
1,702,323	+				+0.8
1,702,323	+				-1.6
1,702,324	-				+1.0
1,702,324	-				-1.5
1,702,324	-				-1.0
1,702,324	-				+0.2
1,702,324	-				-0.1
1,702,324	-				+0.6
1,702,324	-				+2.7
1,702,334	+				+0.5
1,702,335	-				-1.3
1,702,349	+				-1.9
1,702,538	+		Psyr_1516	0.17	+1.4
1,702,539	-		Psyr_1516	0.17	+0.0
1,702,696	+		Psyr_1516	0.28	-0.5
1,702,707	+		Psyr_1516	0.29	+0.3