Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1480

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
1,668,547	-		Psyr_1479	0.17	-0.7
1,668,549	+		Psyr_1479	0.17	-0.0
1,668,570	+		Psyr_1479	0.19	+1.4
1,668,580	+		Psyr_1479	0.20	-2.7
1,668,580	+		Psyr_1479	0.20	-1.6
1,668,580	+		Psyr_1479	0.20	+0.1
1,668,580	+		Psyr_1479	0.20	+1.0
1,668,581	-		Psyr_1479	0.20	+0.6
1,668,642	-		Psyr_1479	0.25	+1.7
1,668,642	-		Psyr_1479	0.25	+0.6
1,668,660	+		Psyr_1479	0.27	-1.4
1,668,660	+		Psyr_1479	0.27	-0.0
1,668,661	-		Psyr_1479	0.27	-1.5
1,668,661	-		Psyr_1479	0.27	-1.0
1,668,661	-		Psyr_1479	0.27	+0.2
1,668,661	-		Psyr_1479	0.27	-2.3
1,668,802	+		Psyr_1479	0.39	-0.6
1,668,802	+		Psyr_1479	0.39	-1.8
1,668,802	+		Psyr_1479	0.39	+0.6
1,668,803	-		Psyr_1479	0.39	-0.7
1,668,803	-		Psyr_1479	0.39	-0.1
1,668,804	+		Psyr_1479	0.39	-0.4
1,668,804	+		Psyr_1479	0.39	-0.7
1,668,804	+		Psyr_1479	0.39	-1.4
1,668,804	+		Psyr_1479	0.39	-2.4
1,668,804	+		Psyr_1479	0.39	-0.2
1,668,805	-		Psyr_1479	0.39	-1.1
1,668,805	-		Psyr_1479	0.39	-1.1
1,668,805	-		Psyr_1479	0.39	+0.4
1,668,805	-		Psyr_1479	0.39	+0.4
1,668,805	-		Psyr_1479	0.39	-0.3
1,668,866	+		Psyr_1479	0.44	-0.7
1,668,958	+		Psyr_1479	0.52	-0.2
1,668,958	+		Psyr_1479	0.52	-0.5
1,668,958	+		Psyr_1479	0.52	-0.2
1,668,958	+		Psyr_1479	0.52	+0.6
1,668,958	+		Psyr_1479	0.52	+0.8
1,668,958	+		Psyr_1479	0.52	-0.2
1,668,958	+		Psyr_1479	0.52	+0.4
1,668,959	-		Psyr_1479	0.52	-0.1
1,668,959	-		Psyr_1479	0.52	+1.0
1,668,959	-		Psyr_1479	0.52	+1.3
1,668,959	-		Psyr_1479	0.52	-2.3
1,668,959	-		Psyr_1479	0.52	-0.2
1,668,959	-		Psyr_1479	0.52	+0.6
1,668,959	-		Psyr_1479	0.52	+0.5
1,668,959	-		Psyr_1479	0.52	+0.8
1,668,998	+		Psyr_1479	0.56	-1.1
1,668,998	+		Psyr_1479	0.56	+0.1
1,669,013	+		Psyr_1479	0.57	+1.3
1,669,013	+		Psyr_1479	0.57	+0.1
1,669,014	-		Psyr_1479	0.57	-0.9
1,669,037	+		Psyr_1479	0.59	-0.5
1,669,037	+		Psyr_1479	0.59	-0.0
1,669,037	+		Psyr_1479	0.59	-0.2
1,669,037	+				+0.9
1,669,037	+		Psyr_1479	0.59	+0.9
1,669,037	+		Psyr_1479	0.59	+0.1
1,669,037	+		Psyr_1479	0.59	-0.8
1,669,038	-		Psyr_1479	0.59	-0.2
1,669,038	-		Psyr_1479	0.59	-0.5
1,669,038	-		Psyr_1479	0.59	+0.6
1,669,038	-		Psyr_1479	0.59	-0.3
1,669,038	-		Psyr_1479	0.59	+0.5
1,669,076	+		Psyr_1479	0.62	-0.7
1,669,247	+		Psyr_1479	0.77	-1.5
1,669,247	+		Psyr_1479	0.77	-0.1
1,669,247	+		Psyr_1479	0.77	-0.1
1,669,247	+		Psyr_1479	0.77	-1.3
1,669,247	+		Psyr_1479	0.77	+0.3
1,669,248	-		Psyr_1479	0.77	-0.6
1,669,248	-		Psyr_1479	0.77	+0.9
1,669,248	-		Psyr_1479	0.77	-0.6
1,669,261	+		Psyr_1479	0.78	-0.5
1,669,261	+		Psyr_1479	0.78	-0.0
1,669,324	+		Psyr_1479	0.84	+0.5
1,669,324	+		Psyr_1479	0.84	-0.5
1,669,324	+		Psyr_1479	0.84	+0.4
1,669,324	+		Psyr_1479	0.84	+0.1
1,669,325	-		Psyr_1479	0.84	+0.8
1,669,325	-		Psyr_1479	0.84	-2.3
1,669,325	-		Psyr_1479	0.84	-0.1
1,669,325	-		Psyr_1479	0.84	-0.7
1,669,325	-		Psyr_1479	0.84	-1.4
1,669,353	+		Psyr_1479	0.86	-2.1
1,669,353	+		Psyr_1479	0.86	+1.0
1,669,353	+		Psyr_1479	0.86	-0.6
1,669,353	+		Psyr_1479	0.86	-1.0
1,669,354	-		Psyr_1479	0.86	-1.6
1,669,374	+		Psyr_1479	0.88	-1.8
1,669,374	+		Psyr_1479	0.88	+0.5
1,669,375	-		Psyr_1479	0.88	-1.9
1,669,375	-		Psyr_1479	0.88	-0.7
1,669,435	-				+1.0
1,669,482	+				-1.2
1,669,525	+				-0.8
1,669,575	-				-1.5
1,669,637	+		Psyr_1480	0.19	+0.3
1,669,801	-		Psyr_1480	0.46	+0.4
1,669,810	+		Psyr_1480	0.47	-0.4
1,669,909	+		Psyr_1480	0.64	+1.8
1,669,909	+		Psyr_1480	0.64	+4.6
1,669,909	+		Psyr_1480	0.64	+0.8
1,669,909	+		Psyr_1480	0.64	-1.2
1,669,910	-		Psyr_1480	0.64	-0.6
1,669,910	-		Psyr_1480	0.64	-0.9
1,669,910	-		Psyr_1480	0.64	+0.7
1,669,910	-		Psyr_1480	0.64	-1.6
1,669,910	-		Psyr_1480	0.64	-0.7
1,669,956	+		Psyr_1480	0.72	+2.1
1,669,956	+		Psyr_1480	0.72	+0.4
1,669,994	-		Psyr_1480	0.78	+2.4
1,669,999	-		Psyr_1480	0.79	+0.8
1,670,079	+				-1.1
1,670,079	+				-3.0
1,670,079	+				+0.6
1,670,080	-				+1.0
1,670,080	-				-2.8
1,670,080	-				-1.5
1,670,080	-				-0.4
1,670,080	-				-0.9
1,670,122	-				+0.3
1,670,127	+				+2.6
1,670,127	+				-0.1
1,670,127	+				-0.2
1,670,127	+				-2.6
1,670,128	-				+0.8
1,670,128	-				-0.8
1,670,128	-				+1.4
1,670,128	-				-0.2
1,670,155	-				-0.9
1,670,177	-				+0.1
1,670,237	+		Psyr_1481	0.20	-0.1
1,670,247	+		Psyr_1481	0.22	+0.8
1,670,247	+		Psyr_1481	0.22	-0.0
1,670,247	+		Psyr_1481	0.22	+0.8
1,670,248	-		Psyr_1481	0.22	-0.6
1,670,309	+		Psyr_1481	0.34	-0.8
1,670,309	+		Psyr_1481	0.34	+1.4
1,670,310	-		Psyr_1481	0.34	+1.2
1,670,310	-		Psyr_1481	0.34	-0.6
1,670,310	-		Psyr_1481	0.34	-1.4
1,670,310	-		Psyr_1481	0.34	-2.6
1,670,319	+		Psyr_1481	0.35	-2.2
1,670,319	+		Psyr_1481	0.35	+1.9
1,670,319	+		Psyr_1481	0.35	+0.3
1,670,319	+		Psyr_1481	0.35	+0.1
1,670,320	-		Psyr_1481	0.36	-0.0
1,670,320	-		Psyr_1481	0.36	-0.4
1,670,320	-		Psyr_1481	0.36	+0.4
1,670,320	-		Psyr_1481	0.36	-1.9
1,670,320	-		Psyr_1481	0.36	+0.8
1,670,320	-		Psyr_1481	0.36	-0.9
1,670,323	+		Psyr_1481	0.36	+2.3
1,670,323	+		Psyr_1481	0.36	+0.2
1,670,323	+		Psyr_1481	0.36	-0.1
1,670,324	-		Psyr_1481	0.36	+0.9
1,670,324	-		Psyr_1481	0.36	+0.4
1,670,324	-		Psyr_1481	0.36	-1.8
1,670,324	-		Psyr_1481	0.36	-1.2
1,670,324	-		Psyr_1481	0.36	-2.0
1,670,354	+		Psyr_1481	0.42	-0.2
1,670,354	+		Psyr_1481	0.42	-0.2
1,670,354	+		Psyr_1481	0.42	-3.6
1,670,355	-		Psyr_1481	0.42	+1.2
1,670,355	-		Psyr_1481	0.42	-0.3
1,670,355	-		Psyr_1481	0.42	+0.9
1,670,355	-		Psyr_1481	0.42	+1.2
1,670,388	+		Psyr_1481	0.48	-0.1
1,670,388	+		Psyr_1481	0.48	-0.2
1,670,388	+		Psyr_1481	0.48	+0.5
1,670,388	+		Psyr_1481	0.48	+0.2
1,670,388	+		Psyr_1481	0.48	+3.4
1,670,388	+		Psyr_1481	0.48	+0.7
1,670,388	+		Psyr_1481	0.48	+1.8
1,670,388	+		Psyr_1481	0.48	-1.1
1,670,388	+		Psyr_1481	0.48	+0.0
1,670,388	+		Psyr_1481	0.48	+0.3
1,670,388	+		Psyr_1481	0.48	+0.1
1,670,388	+		Psyr_1481	0.48	+0.5
1,670,388	+		Psyr_1481	0.48	+0.6
1,670,388	+		Psyr_1481	0.48	-0.4
1,670,388	+		Psyr_1481	0.48	+0.2
1,670,389	-		Psyr_1481	0.48	+3.0
1,670,389	-		Psyr_1481	0.48	-0.5
1,670,389	-		Psyr_1481	0.48	-0.8
1,670,389	-		Psyr_1481	0.48	+0.5
1,670,389	-		Psyr_1481	0.48	-1.4
1,670,389	-		Psyr_1481	0.48	+0.4
1,670,389	-		Psyr_1481	0.48	+1.1
1,670,389	-		Psyr_1481	0.48	-1.8
1,670,389	-		Psyr_1481	0.48	+1.0
1,670,389	-		Psyr_1481	0.48	-0.7
1,670,389	-		Psyr_1481	0.48	+1.1
1,670,389	-		Psyr_1481	0.48	+1.8
1,670,389	-		Psyr_1481	0.48	+2.3
1,670,389	-		Psyr_1481	0.48	-0.9
1,670,389	-		Psyr_1481	0.48	+0.2
1,670,399	+		Psyr_1481	0.50	-1.0
1,670,399	+		Psyr_1481	0.50	+1.4
1,670,400	-		Psyr_1481	0.50	-1.2
1,670,488	+		Psyr_1481	0.66	+0.3
1,670,488	+		Psyr_1481	0.66	+1.8
1,670,489	-		Psyr_1481	0.66	+0.8
1,670,489	-		Psyr_1481	0.66	+1.0
1,670,505	+		Psyr_1481	0.69	-0.1
1,670,505	+		Psyr_1481	0.69	+0.7
1,670,580	+		Psyr_1481	0.83	+0.2
1,670,580	+		Psyr_1481	0.83	+1.2
1,670,581	-		Psyr_1481	0.83	-1.7
1,670,581	-		Psyr_1481	0.83	-1.7
1,670,581	-		Psyr_1481	0.83	-1.6
1,670,581	-		Psyr_1481	0.83	+0.9
1,670,656	+				+2.3
1,670,664	+				+2.0
1,670,664	+				-0.2
1,670,664	+				+1.3
1,670,664	+				-0.4
1,670,665	-				+3.2
1,670,665	-				+0.2
1,670,665	-				+1.8
1,670,665	-				-0.8
1,670,677	+				-0.2
1,670,677	+				+0.4
1,670,677	+				-1.4
1,670,678	-				-0.4
1,670,678	-				-0.6
1,670,692	-				-0.9
1,670,729	+				+0.8
1,670,729	+				+0.2
1,670,729	+				-0.6
1,670,729	+				-0.4
1,670,729	+				+0.2
1,670,730	-				-2.0
1,670,730	-				+0.4
1,670,730	-				-1.2
1,670,730	-				-0.1
1,670,730	-				+0.8
1,670,730	-				-2.2
1,670,731	+				+0.6
1,670,731	+				-0.8
1,670,731	+				+0.4
1,670,731	+				-0.7
1,670,731	+				-0.6
1,670,731	+				+0.7
1,670,731	+				-1.0
1,670,732	-				-0.4
1,670,732	-				-0.2
1,670,732	-				-0.2
1,670,732	-				-0.5
1,670,732	-				-0.1
1,670,732	-				+1.2
1,670,732	-				-0.0
1,670,732	-				-0.3
1,670,732	-				+0.6
1,670,732	-				+0.6
1,670,732	-				+0.1
1,670,732	-				+0.2
1,670,732	-				+0.7
1,670,732	-				+0.0
1,670,732	-				+1.5
1,670,815	+				-0.4
1,670,815	+				+1.1
1,670,815	+				-1.9
1,670,816	-				-1.5
1,670,844	+				+0.5
1,670,863	+				-1.6
1,670,863	+				-0.4
1,670,863	+				-0.3
1,670,863	+				-2.1
1,670,864	-				-0.2
1,670,864	-				+0.4
1,670,864	-				+1.6
1,671,050	+		Psyr_1482	0.20	-1.2
1,671,050	+		Psyr_1482	0.20	-0.9
1,671,050	+		Psyr_1482	0.20	+0.2
1,671,051	-		Psyr_1482	0.21	-0.5
1,671,051	-		Psyr_1482	0.21	-0.6
1,671,051	-		Psyr_1482	0.21	-0.5
1,671,063	+		Psyr_1482	0.21	+0.3
1,671,123	+		Psyr_1482	0.26	-0.4
1,671,123	+		Psyr_1482	0.26	-0.2
1,671,123	+		Psyr_1482	0.26	+1.6
1,671,123	+		Psyr_1482	0.26	-0.2
1,671,123	+		Psyr_1482	0.26	-1.1
1,671,123	+		Psyr_1482	0.26	+1.8
1,671,123	+		Psyr_1482	0.26	-0.0
1,671,123	+		Psyr_1482	0.26	-1.0
1,671,123	+		Psyr_1482	0.26	-0.0
1,671,124	-		Psyr_1482	0.26	-0.4
1,671,124	-		Psyr_1482	0.26	-1.5
1,671,124	-		Psyr_1482	0.26	-0.4