Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1452

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
1,637,694	+				+1.0
1,637,694	+				-2.0
1,637,745	+		Psyr_1449	0.31	+0.2
1,637,745	+		Psyr_1449	0.31	+0.6
1,637,775	-		Psyr_1449	0.43	-1.5
1,637,775	-		Psyr_1449	0.43	+1.0
1,637,782	+		Psyr_1449	0.46	-0.3
1,637,782	+		Psyr_1449	0.46	-0.4
1,637,782	+		Psyr_1449	0.46	+0.9
1,637,803	+		Psyr_1449	0.55	+0.7
1,637,936	-				+0.3
1,637,936	-				-0.0
1,638,175	+		Psyr_1450	0.74	+3.4
1,638,175	+		Psyr_1450	0.74	+0.3
1,638,175	+		Psyr_1450	0.74	-0.1
1,638,175	+		Psyr_1450	0.74	+0.1
1,638,176	-		Psyr_1450	0.74	-1.4
1,638,176	-		Psyr_1450	0.74	+0.8
1,638,176	-		Psyr_1450	0.74	-0.5
1,638,176	-		Psyr_1450	0.74	-1.7
1,638,198	+		Psyr_1450	0.80	-0.5
1,638,198	+		Psyr_1450	0.80	+0.0
1,638,198	+		Psyr_1450	0.80	+1.4
1,638,199	-		Psyr_1450	0.80	-1.9
1,638,199	-		Psyr_1450	0.80	-0.5
1,638,199	-		Psyr_1450	0.80	-0.9
1,638,290	+				-0.3
1,638,291	-				-0.8
1,638,298	+				-0.3
1,638,298	+				-2.0
1,638,298	+				-0.3
1,638,298	+				+0.8
1,638,298	+				+0.1
1,638,298	+				+1.0
1,638,298	+				-0.9
1,638,299	-				-2.5
1,638,299	-				-0.0
1,638,299	-				-0.5
1,638,299	-				-1.4
1,638,299	-				+0.8
1,638,336	+				-0.9
1,638,351	-				-0.1
1,638,351	-				+1.2
1,638,351	-				+0.2
1,638,588	+		Psyr_1451	0.72	-0.7
1,638,666	-				+0.6
1,638,793	+				-1.4
1,638,793	+				-1.1
1,638,793	+				-0.0
1,638,793	+				+0.3
1,638,793	+				+0.2
1,638,793	+				-0.0
1,638,793	+				+1.1
1,638,793	+				+1.1
1,638,793	+				-0.6
1,638,793	+				+0.4
1,638,793	+				+1.9
1,638,793	+				+0.4
1,638,793	+				-0.4
1,638,794	-				+0.7
1,638,794	-				-1.2
1,638,794	-				-2.2
1,638,794	-				-1.4
1,638,794	-				-1.0
1,638,794	-				-0.8
1,638,794	-				-1.3
1,638,794	-				-1.0
1,638,794	-				-0.2
1,638,794	-				+1.5
1,638,794	-				+0.3
1,638,797	+				+0.9
1,638,797	+				-1.0
1,638,797	+				+0.7
1,638,797	+				-1.2
1,638,797	+				-2.6
1,638,797	+				+0.4
1,638,797	+				-0.3
1,638,797	+				-1.5
1,638,797	+				+1.4
1,638,797	+				-1.2
1,638,797	+				-1.0
1,638,797	+				-2.1
1,638,797	+				+0.2
1,638,797	+				-1.3
1,638,797	+				+0.7
1,638,797	+				-1.7
1,638,798	-				+0.4
1,638,798	-				+0.6
1,638,798	-				-0.0
1,638,798	-				-1.8
1,638,798	-				-0.5
1,638,798	-				-0.9
1,638,798	-				-2.7
1,638,798	-				-2.5
1,638,798	-				+0.4
1,638,799	+				-1.4
1,638,799	+				+0.8
1,638,799	+				-0.6
1,638,799	+				+0.2
1,638,799	+				-0.5
1,638,799	+				-0.0
1,638,799	+				+1.2
1,638,799	+				+0.5
1,638,799	+				-1.2
1,638,800	-				-0.7
1,638,800	-				-0.4
1,638,800	-				-1.0
1,638,800	-				-0.0
1,638,800	-				-2.8
1,638,800	-				+0.7
1,638,800	-				+0.7
1,638,800	-				+0.8
1,638,800	-				+0.7
1,638,872	+		Psyr_1452	0.12	-0.1
1,638,872	+		Psyr_1452	0.12	-0.1
1,638,872	+		Psyr_1452	0.12	+2.2
1,638,921	+		Psyr_1452	0.16	-0.7
1,638,998	+		Psyr_1452	0.21	-0.0
1,638,999	-		Psyr_1452	0.21	-0.3
1,639,064	+		Psyr_1452	0.25	+0.0
1,639,064	+		Psyr_1452	0.25	-0.9
1,639,064	+		Psyr_1452	0.25	+0.1
1,639,064	+		Psyr_1452	0.25	+0.6
1,639,064	+		Psyr_1452	0.25	+0.1
1,639,064	+		Psyr_1452	0.25	-1.3
1,639,065	-		Psyr_1452	0.26	+0.5
1,639,065	-		Psyr_1452	0.26	-1.1
1,639,065	-		Psyr_1452	0.26	-0.3
1,639,065	-		Psyr_1452	0.26	+0.2
1,639,083	-		Psyr_1452	0.27	-1.3
1,639,122	+		Psyr_1452	0.29	-0.6
1,639,122	+		Psyr_1452	0.29	-0.1
1,639,122	+		Psyr_1452	0.29	+1.2
1,639,123	-		Psyr_1452	0.30	+0.6
1,639,136	+		Psyr_1452	0.30	+2.0
1,639,136	+		Psyr_1452	0.30	-1.2
1,639,137	-				-0.0
1,639,166	+		Psyr_1452	0.32	+1.2
1,639,166	+		Psyr_1452	0.32	-0.7
1,639,166	+		Psyr_1452	0.32	-1.4
1,639,166	+		Psyr_1452	0.32	+0.1
1,639,166	+		Psyr_1452	0.32	-0.6
1,639,167	-		Psyr_1452	0.33	+0.2
1,639,167	-		Psyr_1452	0.33	-1.9
1,639,167	-		Psyr_1452	0.33	+0.2
1,639,167	-		Psyr_1452	0.33	-0.5
1,639,167	-		Psyr_1452	0.33	-0.6
1,639,167	-		Psyr_1452	0.33	-0.7
1,639,248	+		Psyr_1452	0.38	-2.7
1,639,248	+		Psyr_1452	0.38	+0.1
1,639,249	-		Psyr_1452	0.38	-1.5
1,639,259	+		Psyr_1452	0.39	-0.3
1,639,260	-		Psyr_1452	0.39	+0.7
1,639,260	-		Psyr_1452	0.39	+0.2
1,639,371	-		Psyr_1452	0.46	+0.4
1,639,444	+		Psyr_1452	0.51	+2.1
1,639,495	+		Psyr_1452	0.55	-0.7
1,639,495	+		Psyr_1452	0.55	-0.3
1,639,495	+		Psyr_1452	0.55	-0.8
1,639,496	-		Psyr_1452	0.55	-0.6
1,639,496	-		Psyr_1452	0.55	+1.0
1,639,496	-		Psyr_1452	0.55	-0.7
1,639,496	-		Psyr_1452	0.55	+0.8
1,639,496	-		Psyr_1452	0.55	+1.3
1,639,510	+		Psyr_1452	0.56	+0.2
1,639,510	+		Psyr_1452	0.56	+0.0
1,639,510	+		Psyr_1452	0.56	+0.6
1,639,511	-		Psyr_1452	0.56	+1.1
1,639,511	-		Psyr_1452	0.56	+0.6
1,639,617	-		Psyr_1452	0.63	+1.0
1,639,710	+		Psyr_1452	0.70	-0.4
1,639,710	+		Psyr_1452	0.70	-0.4
1,639,711	-		Psyr_1452	0.70	-1.1
1,639,718	+		Psyr_1452	0.70	+0.7
1,639,718	+		Psyr_1452	0.70	-0.3
1,639,718	+		Psyr_1452	0.70	-0.5
1,639,718	+		Psyr_1452	0.70	+0.9
1,639,718	+		Psyr_1452	0.70	-2.6
1,639,718	+		Psyr_1452	0.70	+1.0
1,639,718	+		Psyr_1452	0.70	-1.4
1,639,718	+		Psyr_1452	0.70	-1.3
1,639,719	-		Psyr_1452	0.70	+0.3
1,639,719	-		Psyr_1452	0.70	-0.7
1,639,719	-		Psyr_1452	0.70	-0.1
1,639,719	-		Psyr_1452	0.70	-0.6
1,639,719	-		Psyr_1452	0.70	-2.3
1,639,719	-		Psyr_1452	0.70	+0.9
1,639,719	-		Psyr_1452	0.70	-1.4
1,639,819	-		Psyr_1452	0.77	+0.9
1,639,827	+		Psyr_1452	0.78	-0.0
1,639,910	+		Psyr_1452	0.83	+0.0
1,639,910	+		Psyr_1452	0.83	-3.2
1,639,922	+		Psyr_1452	0.84	+2.2
1,639,932	-		Psyr_1452	0.85	-1.2
1,639,932	-		Psyr_1452	0.85	+1.6
1,640,009	+				+0.4
1,640,009	+				+1.2
1,640,010	-				-0.1
1,640,010	-				-1.8
1,640,018	+				+2.1
1,640,019	-				-0.4
1,640,019	-				-1.8
1,640,019	-				-0.5
1,640,040	+				+0.1
1,640,051	+				+1.2
1,640,101	+				+0.6
1,640,101	+				+2.2
1,640,124	+				-0.7
1,640,124	+				-0.2
1,640,125	-				-1.4
1,640,165	+				-1.1
1,640,165	+				-0.8
1,640,165	+				-0.8
1,640,166	-				+0.6
1,640,166	-				+0.2
1,640,166	-				+0.2
1,640,166	-				+2.3
1,640,172	-				-0.2
1,640,328	-		Psyr_1453	0.22	+1.0
1,640,333	+		Psyr_1453	0.23	+0.2
1,640,333	+		Psyr_1453	0.23	-2.7
1,640,334	-		Psyr_1453	0.23	+0.8
1,640,474	+		Psyr_1453	0.41	+0.0
1,640,474	+		Psyr_1453	0.41	-2.1
1,640,475	-		Psyr_1453	0.41	-0.0
1,640,528	+		Psyr_1453	0.49	-0.3
1,640,528	+		Psyr_1453	0.49	+1.5
1,640,529	-		Psyr_1453	0.49	-0.5
1,640,529	-		Psyr_1453	0.49	-1.1
1,640,529	-		Psyr_1453	0.49	-0.4
1,640,529	-		Psyr_1453	0.49	+0.9
1,640,529	-		Psyr_1453	0.49	-0.3
1,640,529	-		Psyr_1453	0.49	-1.7
1,640,529	-		Psyr_1453	0.49	-2.6
1,640,571	-		Psyr_1453	0.54	+2.8
1,640,627	+		Psyr_1453	0.62	-1.5
1,640,627	+		Psyr_1453	0.62	+0.1
1,640,627	+		Psyr_1453	0.62	+0.9
1,640,628	-		Psyr_1453	0.62	+1.3
1,640,628	-		Psyr_1453	0.62	-1.6
1,640,628	-		Psyr_1453	0.62	-1.7
1,640,628	-		Psyr_1453	0.62	+1.5
1,640,628	-		Psyr_1453	0.62	+1.1
1,640,628	-		Psyr_1453	0.62	+0.6
1,640,628	-		Psyr_1453	0.62	+0.6
1,640,628	-		Psyr_1453	0.62	+0.1
1,640,628	-		Psyr_1453	0.62	+1.7
1,640,628	-		Psyr_1453	0.62	-0.2
1,640,628	-		Psyr_1453	0.62	+0.5
1,640,649	+		Psyr_1453	0.65	+0.7
1,640,649	+		Psyr_1453	0.65	-0.6
1,640,649	+		Psyr_1453	0.65	+0.2
1,640,649	+		Psyr_1453	0.65	+0.7
1,640,649	+		Psyr_1453	0.65	+1.6
1,640,649	+		Psyr_1453	0.65	+1.5
1,640,649	+		Psyr_1453	0.65	-0.6
1,640,649	+		Psyr_1453	0.65	+1.8
1,640,650	-		Psyr_1453	0.65	-1.3
1,640,650	-		Psyr_1453	0.65	-2.0
1,640,650	-		Psyr_1453	0.65	+0.8
1,640,650	-		Psyr_1453	0.65	+0.6
1,640,650	-		Psyr_1453	0.65	+0.2
1,640,650	-		Psyr_1453	0.65	+0.6
1,640,650	-		Psyr_1453	0.65	-2.0
1,640,650	-		Psyr_1453	0.65	+0.2
1,640,650	-		Psyr_1453	0.65	+2.2
1,640,769	-		Psyr_1453	0.81	-0.6
1,640,769	-		Psyr_1453	0.81	-1.8
1,640,857	+				-1.4
1,640,857	+				-1.4
1,640,857	+				-1.1
1,640,857	+				+1.3
1,640,857	+				-2.6
1,640,857	+				+0.7
1,640,858	-				+0.6
1,640,858	-				-0.4
1,640,858	-				+0.5
1,640,858	-				-1.3
1,640,858	-				+1.5
1,641,025	+				-0.5
1,641,026	-				+0.8
1,641,035	+				+0.2
1,641,083	+				-0.8
1,641,083	+				-0.0
1,641,084	-				+3.4
1,641,130	+				-2.0
1,641,130	+				+3.4
1,641,130	+				+0.2
1,641,130	+				+1.1
1,641,130	+				-1.3
1,641,131	-				+1.1
1,641,131	-				-0.2
1,641,131	-				-0.1
1,641,131	-				+0.5
1,641,131	-				-0.3