Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1414

Experiment: library passed through aphids in food, 72 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1412 and Psyr_1413 are separated by 14 nucleotidesPsyr_1413 and Psyr_1414 overlap by 1 nucleotidesPsyr_1414 and Psyr_1415 overlap by 4 nucleotides Psyr_1412: Psyr_1412 - Cell division and transport-associated protein TolQ, at 1,597,822 to 1,598,517 _1412 Psyr_1413: Psyr_1413 - Cell division and transport-associated protein TolR, at 1,598,532 to 1,598,996 _1413 Psyr_1414: Psyr_1414 - Cell division and transport-associated protein TolA, at 1,598,996 to 1,600,066 _1414 Psyr_1415: Psyr_1415 - TolB, N-terminal:TolB, N-terminal, at 1,600,063 to 1,601,364 _1415 Position (kb) 1598 1599 1600 1601Strain fitness (log2 ratio) -3 -2 -1 0 1at 1598.493 kb on + strandat 1598.493 kb on + strandat 1599.032 kb on + strandat 1599.032 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours
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1,598,493 + +0.0
1,598,493 + -2.9
1,599,032 + -0.1
1,599,032 + -1.3

Or see this region's nucleotide sequence