Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1398

Experiment: library passed through aphids in food, 72 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1397 and Psyr_1398 are separated by 45 nucleotidesPsyr_1398 and Psyr_1399 are separated by 65 nucleotides Psyr_1397: Psyr_1397 - DNA-directed DNA polymerase, at 1,582,602 to 1,583,666 _1397 Psyr_1398: Psyr_1398 - lipoprotein, putative, at 1,583,712 to 1,584,668 _1398 Psyr_1399: Psyr_1399 - Prolyl-tRNA synthetase, bacterial, at 1,584,734 to 1,586,449 _1399 Position (kb) 1583 1584 1585Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1582.739 kb on + strand, within Psyr_1397at 1582.740 kb on - strand, within Psyr_1397at 1582.740 kb on - strand, within Psyr_1397at 1582.740 kb on - strand, within Psyr_1397at 1582.740 kb on - strand, within Psyr_1397at 1582.740 kb on - strand, within Psyr_1397at 1582.740 kb on - strand, within Psyr_1397at 1582.743 kb on + strand, within Psyr_1397at 1582.743 kb on + strand, within Psyr_1397at 1582.743 kb on + strand, within Psyr_1397at 1582.842 kb on + strand, within Psyr_1397at 1582.842 kb on + strand, within Psyr_1397at 1582.842 kb on + strand, within Psyr_1397at 1582.842 kb on + strand, within Psyr_1397at 1582.843 kb on - strand, within Psyr_1397at 1582.843 kb on - strand, within Psyr_1397at 1582.843 kb on - strand, within Psyr_1397at 1582.843 kb on - strand, within Psyr_1397at 1582.843 kb on - strand, within Psyr_1397at 1582.843 kb on - strand, within Psyr_1397at 1582.843 kb on - strand, within Psyr_1397at 1582.844 kb on + strand, within Psyr_1397at 1582.844 kb on + strand, within Psyr_1397at 1582.845 kb on - strand, within Psyr_1397at 1582.895 kb on + strand, within Psyr_1397at 1582.895 kb on + strand, within Psyr_1397at 1582.896 kb on - strand, within Psyr_1397at 1582.897 kb on + strand, within Psyr_1397at 1582.897 kb on + strand, within Psyr_1397at 1582.898 kb on - strand, within Psyr_1397at 1582.898 kb on - strand, within Psyr_1397at 1583.100 kb on - strand, within Psyr_1397at 1583.158 kb on + strand, within Psyr_1397at 1583.348 kb on + strand, within Psyr_1397at 1583.353 kb on - strand, within Psyr_1397at 1583.353 kb on - strand, within Psyr_1397at 1583.541 kb on + strand, within Psyr_1397at 1583.542 kb on - strand, within Psyr_1397at 1583.542 kb on - strand, within Psyr_1397at 1583.542 kb on - strand, within Psyr_1397at 1583.602 kb on + strandat 1583.603 kb on - strandat 1583.603 kb on - strandat 1583.917 kb on + strand, within Psyr_1398at 1583.917 kb on + strand, within Psyr_1398at 1583.918 kb on - strand, within Psyr_1398at 1583.918 kb on - strand, within Psyr_1398at 1583.918 kb on - strand, within Psyr_1398at 1584.017 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.019 kb on + strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.020 kb on - strand, within Psyr_1398at 1584.385 kb on + strand, within Psyr_1398at 1584.386 kb on - strand, within Psyr_1398at 1584.413 kb on + strand, within Psyr_1398at 1584.413 kb on + strand, within Psyr_1398at 1584.413 kb on + strand, within Psyr_1398at 1584.413 kb on + strand, within Psyr_1398at 1584.414 kb on - strand, within Psyr_1398at 1584.414 kb on - strand, within Psyr_1398at 1584.414 kb on - strand, within Psyr_1398at 1584.414 kb on - strand, within Psyr_1398at 1584.416 kb on - strand, within Psyr_1398at 1584.424 kb on + strand, within Psyr_1398at 1584.648 kb on + strandat 1584.649 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours
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1,582,739 + Psyr_1397 0.13 -2.6
1,582,740 - Psyr_1397 0.13 +2.9
1,582,740 - Psyr_1397 0.13 +0.9
1,582,740 - Psyr_1397 0.13 -1.2
1,582,740 - Psyr_1397 0.13 +1.5
1,582,740 - Psyr_1397 0.13 +0.1
1,582,740 - Psyr_1397 0.13 +0.1
1,582,743 + Psyr_1397 0.13 +2.0
1,582,743 + Psyr_1397 0.13 +0.9
1,582,743 + Psyr_1397 0.13 +0.1
1,582,842 + Psyr_1397 0.23 -1.7
1,582,842 + Psyr_1397 0.23 +2.0
1,582,842 + Psyr_1397 0.23 +0.0
1,582,842 + Psyr_1397 0.23 -0.8
1,582,843 - Psyr_1397 0.23 -0.0
1,582,843 - Psyr_1397 0.23 -1.2
1,582,843 - Psyr_1397 0.23 +0.1
1,582,843 - Psyr_1397 0.23 -0.2
1,582,843 - Psyr_1397 0.23 +0.1
1,582,843 - Psyr_1397 0.23 +0.0
1,582,843 - Psyr_1397 0.23 -2.7
1,582,844 + Psyr_1397 0.23 -0.7
1,582,844 + Psyr_1397 0.23 -1.1
1,582,845 - Psyr_1397 0.23 +0.2
1,582,895 + Psyr_1397 0.28 -0.5
1,582,895 + Psyr_1397 0.28 +0.1
1,582,896 - Psyr_1397 0.28 +0.3
1,582,897 + Psyr_1397 0.28 +0.0
1,582,897 + Psyr_1397 0.28 +0.2
1,582,898 - Psyr_1397 0.28 +0.6
1,582,898 - Psyr_1397 0.28 -1.9
1,583,100 - Psyr_1397 0.47 -1.1
1,583,158 + Psyr_1397 0.52 -2.5
1,583,348 + Psyr_1397 0.70 -0.5
1,583,353 - Psyr_1397 0.71 -0.9
1,583,353 - Psyr_1397 0.71 +0.5
1,583,541 + Psyr_1397 0.88 -1.9
1,583,542 - Psyr_1397 0.88 +0.7
1,583,542 - Psyr_1397 0.88 +1.6
1,583,542 - Psyr_1397 0.88 +1.2
1,583,602 + +1.2
1,583,603 - +0.4
1,583,603 - +0.7
1,583,917 + Psyr_1398 0.21 -0.0
1,583,917 + Psyr_1398 0.21 +0.4
1,583,918 - Psyr_1398 0.22 -0.4
1,583,918 - Psyr_1398 0.22 -0.6
1,583,918 - Psyr_1398 0.22 -1.3
1,584,017 + Psyr_1398 0.32 -1.3
1,584,019 + Psyr_1398 0.32 -0.1
1,584,019 + Psyr_1398 0.32 -1.4
1,584,019 + Psyr_1398 0.32 -1.9
1,584,019 + Psyr_1398 0.32 -2.1
1,584,019 + Psyr_1398 0.32 +1.1
1,584,019 + Psyr_1398 0.32 +0.3
1,584,019 + Psyr_1398 0.32 -1.3
1,584,019 + Psyr_1398 0.32 +1.9
1,584,019 + Psyr_1398 0.32 +3.5
1,584,019 + Psyr_1398 0.32 +1.3
1,584,019 + Psyr_1398 0.32 -2.7
1,584,019 + Psyr_1398 0.32 -2.6
1,584,019 + Psyr_1398 0.32 -0.5
1,584,019 + Psyr_1398 0.32 -1.4
1,584,019 + Psyr_1398 0.32 -0.1
1,584,019 + Psyr_1398 0.32 +0.3
1,584,019 + Psyr_1398 0.32 -1.3
1,584,019 + Psyr_1398 0.32 +0.8
1,584,019 + Psyr_1398 0.32 -2.4
1,584,019 + Psyr_1398 0.32 +0.4
1,584,019 + Psyr_1398 0.32 +0.6
1,584,019 + Psyr_1398 0.32 +0.1
1,584,019 + Psyr_1398 0.32 -0.7
1,584,020 - Psyr_1398 0.32 -1.4
1,584,020 - Psyr_1398 0.32 -0.9
1,584,020 - Psyr_1398 0.32 +0.8
1,584,020 - Psyr_1398 0.32 +0.4
1,584,020 - Psyr_1398 0.32 +0.5
1,584,020 - Psyr_1398 0.32 -0.9
1,584,020 - Psyr_1398 0.32 -0.9
1,584,020 - Psyr_1398 0.32 -1.9
1,584,020 - Psyr_1398 0.32 -1.9
1,584,020 - Psyr_1398 0.32 -0.2
1,584,020 - Psyr_1398 0.32 -0.2
1,584,020 - Psyr_1398 0.32 -1.4
1,584,020 - Psyr_1398 0.32 -0.5
1,584,020 - Psyr_1398 0.32 +1.2
1,584,020 - Psyr_1398 0.32 -1.7
1,584,020 - Psyr_1398 0.32 +1.2
1,584,020 - Psyr_1398 0.32 -0.9
1,584,020 - Psyr_1398 0.32 +0.3
1,584,020 - Psyr_1398 0.32 -1.7
1,584,020 - Psyr_1398 0.32 +0.7
1,584,020 - Psyr_1398 0.32 -1.7
1,584,020 - Psyr_1398 0.32 -1.1
1,584,020 - Psyr_1398 0.32 +0.2
1,584,385 + Psyr_1398 0.70 -0.5
1,584,386 - Psyr_1398 0.70 -1.9
1,584,413 + Psyr_1398 0.73 +1.9
1,584,413 + Psyr_1398 0.73 -0.2
1,584,413 + Psyr_1398 0.73 -1.5
1,584,413 + Psyr_1398 0.73 +0.1
1,584,414 - Psyr_1398 0.73 +0.1
1,584,414 - Psyr_1398 0.73 +0.3
1,584,414 - Psyr_1398 0.73 +0.0
1,584,414 - Psyr_1398 0.73 -1.2
1,584,416 - Psyr_1398 0.74 -0.9
1,584,424 + Psyr_1398 0.74 -0.8
1,584,648 + -0.9
1,584,649 - +0.1

Or see this region's nucleotide sequence