Experiment: library passed through aphids in food, 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0876 and Psyr_0877 are separated by 24 nucleotides Psyr_0877 and Psyr_0878 are separated by 64 nucleotides
Psyr_0876: Psyr_0876 - TonB-dependent receptor:TonB-dependent receptor, C-terminal, at 997,800 to 1,000,082
_0876
Psyr_0877: Psyr_0877 - outer membrane transport energization protein ExbB, at 1,000,107 to 1,000,757
_0877
Psyr_0878: Psyr_0878 - Phospholipase D/Transphosphatidylase, at 1,000,822 to 1,002,063
_0878
Position (kb) 1000
1001 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 999.119 kb on + strand, within Psyr_0876 at 999.119 kb on + strand, within Psyr_0876 at 999.119 kb on + strand, within Psyr_0876 at 999.163 kb on - strand, within Psyr_0876 at 999.163 kb on - strand, within Psyr_0876 at 999.163 kb on - strand, within Psyr_0876 at 999.163 kb on - strand, within Psyr_0876 at 999.273 kb on + strand, within Psyr_0876 at 999.273 kb on + strand, within Psyr_0876 at 999.273 kb on + strand, within Psyr_0876 at 999.273 kb on + strand, within Psyr_0876 at 999.273 kb on + strand, within Psyr_0876 at 999.273 kb on + strand, within Psyr_0876 at 999.274 kb on - strand, within Psyr_0876 at 999.274 kb on - strand, within Psyr_0876 at 999.274 kb on - strand, within Psyr_0876 at 999.274 kb on - strand, within Psyr_0876 at 999.307 kb on - strand, within Psyr_0876 at 999.307 kb on - strand, within Psyr_0876 at 999.337 kb on - strand, within Psyr_0876 at 999.372 kb on + strand, within Psyr_0876 at 999.372 kb on + strand, within Psyr_0876 at 999.372 kb on + strand, within Psyr_0876 at 999.372 kb on + strand, within Psyr_0876 at 999.372 kb on + strand, within Psyr_0876 at 999.372 kb on + strand, within Psyr_0876 at 999.372 kb on + strand, within Psyr_0876 at 999.373 kb on - strand, within Psyr_0876 at 999.373 kb on - strand, within Psyr_0876 at 999.373 kb on - strand, within Psyr_0876 at 999.373 kb on - strand, within Psyr_0876 at 999.373 kb on - strand, within Psyr_0876 at 999.373 kb on - strand, within Psyr_0876 at 999.381 kb on + strand, within Psyr_0876 at 999.381 kb on + strand, within Psyr_0876 at 999.382 kb on - strand, within Psyr_0876 at 999.382 kb on - strand, within Psyr_0876 at 999.382 kb on - strand, within Psyr_0876 at 999.450 kb on + strand, within Psyr_0876 at 999.451 kb on - strand, within Psyr_0876 at 999.490 kb on - strand, within Psyr_0876 at 999.621 kb on + strand, within Psyr_0876 at 999.621 kb on + strand, within Psyr_0876 at 999.621 kb on + strand, within Psyr_0876 at 999.621 kb on + strand, within Psyr_0876 at 999.621 kb on + strand, within Psyr_0876 at 999.622 kb on - strand, within Psyr_0876 at 999.622 kb on - strand, within Psyr_0876 at 999.622 kb on - strand, within Psyr_0876 at 999.622 kb on - strand, within Psyr_0876 at 999.622 kb on - strand, within Psyr_0876 at 999.624 kb on + strand, within Psyr_0876 at 999.625 kb on - strand, within Psyr_0876 at 999.625 kb on - strand, within Psyr_0876 at 999.625 kb on - strand, within Psyr_0876 at 999.625 kb on - strand, within Psyr_0876 at 999.625 kb on - strand, within Psyr_0876 at 999.625 kb on - strand, within Psyr_0876 at 999.625 kb on - strand, within Psyr_0876 at 999.633 kb on + strand, within Psyr_0876 at 999.633 kb on + strand, within Psyr_0876 at 999.633 kb on + strand, within Psyr_0876 at 999.634 kb on - strand, within Psyr_0876 at 999.639 kb on + strand, within Psyr_0876 at 999.639 kb on + strand, within Psyr_0876 at 999.639 kb on + strand, within Psyr_0876 at 999.639 kb on + strand, within Psyr_0876 at 999.639 kb on + strand, within Psyr_0876 at 999.640 kb on - strand, within Psyr_0876 at 999.640 kb on - strand, within Psyr_0876 at 999.640 kb on - strand, within Psyr_0876 at 999.722 kb on + strand, within Psyr_0876 at 999.723 kb on - strand, within Psyr_0876 at 999.723 kb on - strand, within Psyr_0876 at 999.723 kb on - strand, within Psyr_0876 at 999.723 kb on - strand, within Psyr_0876 at 999.723 kb on - strand, within Psyr_0876 at 999.723 kb on - strand, within Psyr_0876 at 999.778 kb on - strand, within Psyr_0876 at 999.780 kb on + strand, within Psyr_0876 at 999.816 kb on + strand, within Psyr_0876 at 999.816 kb on + strand, within Psyr_0876 at 999.817 kb on - strand, within Psyr_0876 at 999.878 kb on + strand at 999.878 kb on + strand at 999.878 kb on + strand at 999.878 kb on + strand at 999.878 kb on + strand at 999.878 kb on + strand at 999.878 kb on + strand at 999.878 kb on + strand at 999.879 kb on - strand at 999.879 kb on - strand at 999.879 kb on - strand at 999.879 kb on - strand at 999.879 kb on - strand at 999.882 kb on + strand at 999.882 kb on + strand at 999.882 kb on + strand at 999.883 kb on - strand at 999.883 kb on - strand at 999.883 kb on - strand at 999.883 kb on - strand at 999.883 kb on - strand at 999.883 kb on - strand at 999.883 kb on - strand at 999.883 kb on - strand at 999.957 kb on + strand at 999.958 kb on - strand at 999.972 kb on + strand at 999.972 kb on + strand at 999.973 kb on - strand at 999.973 kb on - strand at 999.973 kb on - strand at 999.999 kb on + strand at 999.999 kb on + strand at 999.999 kb on + strand at 999.999 kb on + strand at 999.999 kb on + strand at 1000.000 kb on - strand at 1000.000 kb on - strand at 1000.000 kb on - strand at 1000.000 kb on - strand at 1000.029 kb on + strand at 1000.029 kb on + strand at 1000.029 kb on + strand at 1000.029 kb on + strand at 1000.030 kb on - strand at 1000.030 kb on - strand at 1000.030 kb on - strand at 1000.140 kb on + strand at 1000.140 kb on + strand at 1000.140 kb on + strand at 1000.140 kb on + strand at 1000.140 kb on + strand at 1000.140 kb on + strand at 1000.140 kb on + strand at 1000.140 kb on + strand at 1000.141 kb on - strand at 1000.141 kb on - strand at 1000.141 kb on - strand at 1000.149 kb on + strand at 1000.149 kb on + strand at 1000.149 kb on + strand at 1000.150 kb on - strand at 1000.150 kb on - strand at 1000.150 kb on - strand at 1000.150 kb on - strand at 1000.150 kb on - strand at 1000.150 kb on - strand at 1000.166 kb on - strand at 1000.197 kb on + strand, within Psyr_0877 at 1000.197 kb on + strand, within Psyr_0877 at 1000.197 kb on + strand, within Psyr_0877 at 1000.197 kb on + strand, within Psyr_0877 at 1000.197 kb on + strand, within Psyr_0877 at 1000.197 kb on + strand, within Psyr_0877 at 1000.198 kb on - strand, within Psyr_0877 at 1000.198 kb on - strand, within Psyr_0877 at 1000.198 kb on - strand, within Psyr_0877 at 1000.198 kb on - strand, within Psyr_0877 at 1000.198 kb on - strand, within Psyr_0877 at 1000.206 kb on + strand, within Psyr_0877 at 1000.206 kb on + strand, within Psyr_0877 at 1000.207 kb on - strand, within Psyr_0877 at 1000.207 kb on - strand, within Psyr_0877 at 1000.207 kb on - strand, within Psyr_0877 at 1000.207 kb on - strand, within Psyr_0877 at 1000.389 kb on + strand, within Psyr_0877 at 1000.389 kb on + strand, within Psyr_0877 at 1000.623 kb on + strand, within Psyr_0877 at 1000.623 kb on + strand, within Psyr_0877 at 1000.623 kb on + strand, within Psyr_0877 at 1000.623 kb on + strand, within Psyr_0877 at 1000.623 kb on + strand, within Psyr_0877 at 1000.623 kb on + strand, within Psyr_0877 at 1000.624 kb on - strand, within Psyr_0877 at 1000.624 kb on - strand, within Psyr_0877 at 1000.624 kb on - strand, within Psyr_0877 at 1000.624 kb on - strand, within Psyr_0877 at 1000.832 kb on - strand at 1000.840 kb on + strand at 1000.840 kb on + strand at 1000.841 kb on - strand at 1000.841 kb on - strand at 1000.884 kb on - strand at 1000.940 kb on + strand at 1000.940 kb on + strand at 1000.940 kb on + strand at 1000.940 kb on + strand at 1000.940 kb on + strand at 1000.940 kb on + strand at 1000.941 kb on - strand at 1000.941 kb on - strand at 1000.941 kb on - strand at 1000.944 kb on + strand at 1000.944 kb on + strand at 1000.944 kb on + strand at 1000.944 kb on + strand at 1000.944 kb on + strand at 1000.944 kb on + strand at 1000.945 kb on - strand at 1000.945 kb on - strand at 1001.053 kb on + strand, within Psyr_0878 at 1001.053 kb on + strand, within Psyr_0878 at 1001.053 kb on + strand, within Psyr_0878 at 1001.053 kb on + strand, within Psyr_0878 at 1001.054 kb on - strand, within Psyr_0878 at 1001.054 kb on - strand, within Psyr_0878 at 1001.230 kb on + strand, within Psyr_0878 at 1001.397 kb on - strand, within Psyr_0878 at 1001.491 kb on + strand, within Psyr_0878 at 1001.491 kb on + strand, within Psyr_0878 at 1001.491 kb on + strand, within Psyr_0878 at 1001.491 kb on + strand, within Psyr_0878 at 1001.491 kb on + strand, within Psyr_0878 at 1001.491 kb on + strand, within Psyr_0878 at 1001.492 kb on - strand, within Psyr_0878 at 1001.492 kb on - strand, within Psyr_0878 at 1001.515 kb on + strand, within Psyr_0878 at 1001.515 kb on + strand, within Psyr_0878 at 1001.515 kb on + strand, within Psyr_0878 at 1001.515 kb on + strand, within Psyr_0878 at 1001.516 kb on - strand, within Psyr_0878 at 1001.606 kb on - strand, within Psyr_0878 at 1001.645 kb on - strand, within Psyr_0878 at 1001.647 kb on + strand, within Psyr_0878 at 1001.647 kb on + strand, within Psyr_0878 at 1001.647 kb on + strand, within Psyr_0878 at 1001.648 kb on - strand, within Psyr_0878
Per-strain Table
Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours remove 999,119 + Psyr_0876 0.58 +0.3 999,119 + Psyr_0876 0.58 +0.1 999,119 + Psyr_0876 0.58 -0.7 999,163 - Psyr_0876 0.60 +0.9 999,163 - Psyr_0876 0.60 +2.1 999,163 - Psyr_0876 0.60 +0.8 999,163 - Psyr_0876 0.60 +1.8 999,273 + Psyr_0876 0.65 -1.5 999,273 + Psyr_0876 0.65 +1.4 999,273 + Psyr_0876 0.65 +0.8 999,273 + Psyr_0876 0.65 +0.5 999,273 + Psyr_0876 0.65 -1.1 999,273 + Psyr_0876 0.65 +0.9 999,274 - Psyr_0876 0.65 +1.0 999,274 - Psyr_0876 0.65 +0.4 999,274 - Psyr_0876 0.65 +0.7 999,274 - Psyr_0876 0.65 -0.2 999,307 - Psyr_0876 0.66 +0.4 999,307 - Psyr_0876 0.66 -1.9 999,337 - Psyr_0876 0.67 -0.7 999,372 + Psyr_0876 0.69 -0.5 999,372 + Psyr_0876 0.69 +0.4 999,372 + Psyr_0876 0.69 +0.1 999,372 + Psyr_0876 0.69 -1.0 999,372 + Psyr_0876 0.69 -0.3 999,372 + Psyr_0876 0.69 -2.1 999,372 + Psyr_0876 0.69 +0.1 999,373 - Psyr_0876 0.69 +1.9 999,373 - Psyr_0876 0.69 -0.7 999,373 - Psyr_0876 0.69 +1.7 999,373 - Psyr_0876 0.69 -1.3 999,373 - Psyr_0876 0.69 -0.3 999,373 - Psyr_0876 0.69 +0.9 999,381 + Psyr_0876 0.69 -0.3 999,381 + Psyr_0876 0.69 +0.4 999,382 - Psyr_0876 0.69 +0.6 999,382 - Psyr_0876 0.69 +1.0 999,382 - Psyr_0876 0.69 +1.9 999,450 + Psyr_0876 0.72 -0.6 999,451 - Psyr_0876 0.72 -0.7 999,490 - Psyr_0876 0.74 +1.4 999,621 + Psyr_0876 0.80 -1.3 999,621 + Psyr_0876 0.80 +2.2 999,621 + Psyr_0876 0.80 +0.3 999,621 + Psyr_0876 0.80 +0.1 999,621 + Psyr_0876 0.80 -0.3 999,622 - Psyr_0876 0.80 -0.7 999,622 - Psyr_0876 0.80 -0.5 999,622 - Psyr_0876 0.80 +0.0 999,622 - Psyr_0876 0.80 +0.5 999,622 - Psyr_0876 0.80 -0.2 999,624 + Psyr_0876 0.80 -0.6 999,625 - Psyr_0876 0.80 -0.3 999,625 - Psyr_0876 0.80 +0.8 999,625 - Psyr_0876 0.80 -0.3 999,625 - Psyr_0876 0.80 +1.3 999,625 - Psyr_0876 0.80 -0.5 999,625 - Psyr_0876 0.80 +0.8 999,625 - Psyr_0876 0.80 +0.1 999,633 + Psyr_0876 0.80 +0.7 999,633 + Psyr_0876 0.80 +1.0 999,633 + Psyr_0876 0.80 -0.3 999,634 - Psyr_0876 0.80 +0.1 999,639 + Psyr_0876 0.81 +0.4 999,639 + Psyr_0876 0.81 +1.0 999,639 + Psyr_0876 0.81 -1.1 999,639 + Psyr_0876 0.81 +0.5 999,639 + Psyr_0876 0.81 -0.6 999,640 - Psyr_0876 0.81 -0.6 999,640 - Psyr_0876 0.81 +2.1 999,640 - Psyr_0876 0.81 -1.5 999,722 + Psyr_0876 0.84 +0.3 999,723 - Psyr_0876 0.84 +1.5 999,723 - Psyr_0876 0.84 +0.5 999,723 - Psyr_0876 0.84 +1.2 999,723 - Psyr_0876 0.84 -0.5 999,723 - Psyr_0876 0.84 +2.2 999,723 - Psyr_0876 0.84 -1.2 999,778 - Psyr_0876 0.87 -2.1 999,780 + Psyr_0876 0.87 -1.0 999,816 + Psyr_0876 0.88 +0.3 999,816 + Psyr_0876 0.88 +1.5 999,817 - Psyr_0876 0.88 +0.7 999,878 + +2.3 999,878 + -1.7 999,878 + -0.1 999,878 + -1.2 999,878 + +0.3 999,878 + +1.0 999,878 + +0.2 999,878 + +0.5 999,879 - +1.2 999,879 - -1.8 999,879 - -0.3 999,879 - +0.4 999,879 - -0.0 999,882 + +0.0 999,882 + +0.6 999,882 + -0.3 999,883 - +0.7 999,883 - +0.6 999,883 - -0.1 999,883 - +0.4 999,883 - +0.4 999,883 - -0.6 999,883 - -1.2 999,883 - +0.8 999,957 + +3.9 999,958 - -0.0 999,972 + +0.6 999,972 + +1.1 999,973 - -2.5 999,973 - -1.7 999,973 - -0.1 999,999 + +2.4 999,999 + -1.1 999,999 + -1.9 999,999 + +0.9 999,999 + -0.0 1,000,000 - +1.2 1,000,000 - -0.3 1,000,000 - +0.5 1,000,000 - +0.9 1,000,029 + -0.9 1,000,029 + +0.0 1,000,029 + +2.3 1,000,029 + -0.5 1,000,030 - +0.1 1,000,030 - -0.1 1,000,030 - +1.0 1,000,140 + +1.2 1,000,140 + -2.3 1,000,140 + +1.9 1,000,140 + +0.7 1,000,140 + -1.0 1,000,140 + -0.3 1,000,140 + -2.7 1,000,140 + +0.0 1,000,141 - -0.8 1,000,141 - -0.5 1,000,141 - -0.8 1,000,149 + +1.0 1,000,149 + +0.7 1,000,149 + -1.5 1,000,150 - -1.0 1,000,150 - +0.1 1,000,150 - +0.1 1,000,150 - +0.0 1,000,150 - +1.1 1,000,150 - +1.4 1,000,166 - +1.9 1,000,197 + Psyr_0877 0.14 +0.1 1,000,197 + Psyr_0877 0.14 +0.5 1,000,197 + Psyr_0877 0.14 +0.0 1,000,197 + Psyr_0877 0.14 +0.1 1,000,197 + Psyr_0877 0.14 +0.6 1,000,197 + Psyr_0877 0.14 -0.9 1,000,198 - Psyr_0877 0.14 +0.2 1,000,198 - Psyr_0877 0.14 -0.8 1,000,198 - Psyr_0877 0.14 +0.2 1,000,198 - Psyr_0877 0.14 +0.8 1,000,198 - Psyr_0877 0.14 -0.0 1,000,206 + Psyr_0877 0.15 -1.9 1,000,206 + Psyr_0877 0.15 -0.8 1,000,207 - Psyr_0877 0.15 -0.5 1,000,207 - Psyr_0877 0.15 +1.3 1,000,207 - Psyr_0877 0.15 +0.0 1,000,207 - Psyr_0877 0.15 -1.4 1,000,389 + Psyr_0877 0.43 -0.3 1,000,389 + Psyr_0877 0.43 +0.8 1,000,623 + Psyr_0877 0.79 -1.1 1,000,623 + Psyr_0877 0.79 -1.4 1,000,623 + Psyr_0877 0.79 +0.2 1,000,623 + Psyr_0877 0.79 -0.5 1,000,623 + Psyr_0877 0.79 +0.5 1,000,623 + Psyr_0877 0.79 -0.5 1,000,624 - Psyr_0877 0.79 +0.1 1,000,624 - Psyr_0877 0.79 -0.4 1,000,624 - Psyr_0877 0.79 +0.0 1,000,624 - Psyr_0877 0.79 -0.6 1,000,832 - +0.4 1,000,840 + -0.7 1,000,840 + -1.2 1,000,841 - -0.4 1,000,841 - +1.1 1,000,884 - -1.8 1,000,940 + -2.3 1,000,940 + -0.8 1,000,940 + -0.3 1,000,940 + +0.9 1,000,940 + -1.4 1,000,940 + +0.5 1,000,941 - +3.1 1,000,941 - -0.4 1,000,941 - -1.0 1,000,944 + -1.1 1,000,944 + -1.7 1,000,944 + +0.9 1,000,944 + -1.5 1,000,944 + -0.1 1,000,944 + +0.2 1,000,945 - -0.5 1,000,945 - +2.4 1,001,053 + Psyr_0878 0.19 -1.1 1,001,053 + Psyr_0878 0.19 +0.3 1,001,053 + Psyr_0878 0.19 -0.0 1,001,053 + Psyr_0878 0.19 +1.3 1,001,054 - Psyr_0878 0.19 +2.5 1,001,054 - Psyr_0878 0.19 -2.3 1,001,230 + Psyr_0878 0.33 -0.6 1,001,397 - Psyr_0878 0.46 -1.0 1,001,491 + Psyr_0878 0.54 -0.0 1,001,491 + Psyr_0878 0.54 +0.6 1,001,491 + Psyr_0878 0.54 -0.1 1,001,491 + Psyr_0878 0.54 +1.7 1,001,491 + Psyr_0878 0.54 +0.4 1,001,491 + Psyr_0878 0.54 +1.2 1,001,492 - Psyr_0878 0.54 -1.6 1,001,492 - Psyr_0878 0.54 +0.7 1,001,515 + Psyr_0878 0.56 +0.4 1,001,515 + Psyr_0878 0.56 +1.0 1,001,515 + Psyr_0878 0.56 -0.0 1,001,515 + Psyr_0878 0.56 +0.0 1,001,516 - Psyr_0878 0.56 +0.1 1,001,606 - Psyr_0878 0.63 -0.4 1,001,645 - Psyr_0878 0.66 +0.0 1,001,647 + Psyr_0878 0.66 +1.2 1,001,647 + Psyr_0878 0.66 +1.9 1,001,647 + Psyr_0878 0.66 -1.7 1,001,648 - Psyr_0878 0.67 +0.4
Or see this region's nucleotide sequence