Experiment: library passed through aphids in food, 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0785 and Psyr_0786 are separated by 30 nucleotides Psyr_0786 and Psyr_0787 are separated by 46 nucleotides Psyr_0787 and Psyr_0788 are separated by 23 nucleotides Psyr_0788 and Psyr_0789 are separated by 9 nucleotides
Psyr_0785: Psyr_0785 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 890,888 to 892,543
_0785
Psyr_0786: Psyr_0786 - CheW-like protein:ATP-binding region, ATPase-like:Signal transducing histidine kinase, homodimeric:Hpt, at 892,574 to 894,691
_0786
Psyr_0787: Psyr_0787 - Sulfate transporter/antisigma-factor antagonist STAS, at 894,738 to 895,028
_0787
Psyr_0788: Psyr_0788 - Response regulator receiver, at 895,052 to 895,420
_0788
Psyr_0789: Psyr_0789 - chemotaxis sensory transducer, at 895,430 to 896,647
_0789
Position (kb) 892
893
894
895 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 891.739 kb on + strand, within Psyr_0785 at 891.740 kb on - strand, within Psyr_0785 at 891.956 kb on + strand, within Psyr_0785 at 891.957 kb on - strand, within Psyr_0785 at 892.219 kb on + strand, within Psyr_0785 at 892.220 kb on - strand, within Psyr_0785 at 892.236 kb on + strand, within Psyr_0785 at 892.237 kb on - strand, within Psyr_0785 at 892.530 kb on + strand at 892.531 kb on - strand at 892.531 kb on - strand at 892.531 kb on - strand at 892.549 kb on + strand at 892.549 kb on + strand at 892.549 kb on + strand at 892.550 kb on - strand at 892.550 kb on - strand at 892.550 kb on - strand at 892.550 kb on - strand at 892.550 kb on - strand at 892.631 kb on + strand at 892.631 kb on + strand at 892.631 kb on + strand at 892.631 kb on + strand at 892.632 kb on - strand at 892.632 kb on - strand at 892.632 kb on - strand at 892.632 kb on - strand at 892.872 kb on + strand, within Psyr_0786 at 892.873 kb on - strand, within Psyr_0786 at 892.909 kb on - strand, within Psyr_0786 at 892.986 kb on + strand, within Psyr_0786 at 892.987 kb on - strand, within Psyr_0786 at 893.110 kb on + strand, within Psyr_0786 at 893.110 kb on + strand, within Psyr_0786 at 893.110 kb on + strand, within Psyr_0786 at 893.110 kb on + strand, within Psyr_0786 at 893.110 kb on + strand, within Psyr_0786 at 893.111 kb on - strand, within Psyr_0786 at 893.111 kb on - strand, within Psyr_0786 at 893.111 kb on - strand, within Psyr_0786 at 893.205 kb on + strand, within Psyr_0786 at 893.206 kb on - strand, within Psyr_0786 at 893.206 kb on - strand, within Psyr_0786 at 893.206 kb on - strand, within Psyr_0786 at 893.337 kb on + strand, within Psyr_0786 at 893.763 kb on + strand, within Psyr_0786 at 893.764 kb on - strand, within Psyr_0786 at 893.810 kb on + strand, within Psyr_0786 at 893.845 kb on + strand, within Psyr_0786 at 893.845 kb on + strand, within Psyr_0786 at 893.845 kb on + strand, within Psyr_0786 at 893.845 kb on + strand, within Psyr_0786 at 893.846 kb on - strand, within Psyr_0786 at 893.846 kb on - strand, within Psyr_0786 at 894.214 kb on + strand, within Psyr_0786 at 894.214 kb on + strand, within Psyr_0786 at 894.214 kb on + strand, within Psyr_0786 at 894.214 kb on + strand, within Psyr_0786 at 894.215 kb on - strand, within Psyr_0786 at 894.215 kb on - strand at 894.215 kb on - strand, within Psyr_0786 at 894.509 kb on - strand at 894.682 kb on + strand at 894.682 kb on + strand at 894.683 kb on - strand at 894.683 kb on - strand at 894.683 kb on - strand at 894.683 kb on - strand at 894.685 kb on + strand at 894.685 kb on + strand at 894.685 kb on + strand at 894.686 kb on - strand at 894.686 kb on - strand at 894.722 kb on - strand at 894.739 kb on + strand at 894.758 kb on + strand at 894.758 kb on + strand at 894.758 kb on + strand at 894.758 kb on + strand at 894.758 kb on + strand at 894.758 kb on + strand at 894.758 kb on + strand at 894.758 kb on + strand at 894.759 kb on - strand at 894.759 kb on - strand at 894.759 kb on - strand at 894.759 kb on - strand at 894.762 kb on + strand at 894.762 kb on + strand at 894.762 kb on + strand at 894.763 kb on - strand at 894.763 kb on - strand at 894.763 kb on - strand at 894.961 kb on + strand, within Psyr_0787 at 894.961 kb on + strand, within Psyr_0787 at 894.961 kb on + strand, within Psyr_0787 at 894.962 kb on - strand, within Psyr_0787 at 894.962 kb on - strand, within Psyr_0787 at 894.962 kb on - strand, within Psyr_0787 at 894.962 kb on - strand, within Psyr_0787 at 894.962 kb on - strand, within Psyr_0787 at 894.962 kb on - strand, within Psyr_0787 at 894.962 kb on - strand, within Psyr_0787 at 894.962 kb on - strand, within Psyr_0787 at 894.982 kb on - strand, within Psyr_0787 at 894.982 kb on - strand, within Psyr_0787 at 894.982 kb on - strand, within Psyr_0787 at 895.200 kb on + strand, within Psyr_0788 at 895.200 kb on + strand, within Psyr_0788 at 895.200 kb on + strand, within Psyr_0788 at 895.200 kb on + strand, within Psyr_0788 at 895.200 kb on + strand, within Psyr_0788 at 895.200 kb on + strand, within Psyr_0788 at 895.200 kb on + strand, within Psyr_0788 at 895.201 kb on - strand, within Psyr_0788 at 895.201 kb on - strand, within Psyr_0788 at 895.201 kb on - strand, within Psyr_0788 at 895.341 kb on + strand, within Psyr_0788 at 895.406 kb on + strand at 895.406 kb on + strand at 895.407 kb on - strand at 895.407 kb on - strand at 895.407 kb on - strand at 895.407 kb on - strand at 895.407 kb on - strand at 895.407 kb on - strand at 895.415 kb on - strand at 895.425 kb on + strand at 895.425 kb on + strand at 895.425 kb on + strand at 895.425 kb on + strand at 895.426 kb on - strand at 895.426 kb on - strand at 895.426 kb on - strand at 895.426 kb on - strand at 895.426 kb on - strand at 895.509 kb on + strand at 895.509 kb on + strand at 895.510 kb on - strand at 895.513 kb on + strand at 895.514 kb on - strand at 895.514 kb on - strand at 895.514 kb on - strand at 895.619 kb on + strand, within Psyr_0789 at 895.620 kb on - strand, within Psyr_0789 at 895.620 kb on - strand, within Psyr_0789
Per-strain Table
Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours remove 891,739 + Psyr_0785 0.51 -1.3 891,740 - Psyr_0785 0.51 -0.4 891,956 + Psyr_0785 0.64 -0.1 891,957 - Psyr_0785 0.65 +1.1 892,219 + Psyr_0785 0.80 -0.5 892,220 - Psyr_0785 0.80 +1.8 892,236 + Psyr_0785 0.81 -0.6 892,237 - Psyr_0785 0.81 +1.5 892,530 + -0.9 892,531 - +0.9 892,531 - -1.0 892,531 - +0.0 892,549 + +0.5 892,549 + +0.0 892,549 + -0.3 892,550 - -0.9 892,550 - -0.6 892,550 - -0.5 892,550 - -1.8 892,550 - +0.6 892,631 + +0.5 892,631 + -1.9 892,631 + +0.3 892,631 + -0.0 892,632 - +1.6 892,632 - +0.1 892,632 - -0.9 892,632 - +2.3 892,872 + Psyr_0786 0.14 +0.7 892,873 - Psyr_0786 0.14 -0.1 892,909 - Psyr_0786 0.16 -2.0 892,986 + Psyr_0786 0.19 +0.9 892,987 - Psyr_0786 0.19 -0.3 893,110 + Psyr_0786 0.25 +0.8 893,110 + Psyr_0786 0.25 -1.0 893,110 + Psyr_0786 0.25 +1.6 893,110 + Psyr_0786 0.25 -1.2 893,110 + Psyr_0786 0.25 -0.2 893,111 - Psyr_0786 0.25 -1.3 893,111 - Psyr_0786 0.25 +0.8 893,111 - Psyr_0786 0.25 +1.9 893,205 + Psyr_0786 0.30 +0.7 893,206 - Psyr_0786 0.30 +0.5 893,206 - Psyr_0786 0.30 -2.9 893,206 - Psyr_0786 0.30 -1.1 893,337 + Psyr_0786 0.36 +1.8 893,763 + Psyr_0786 0.56 -0.3 893,764 - Psyr_0786 0.56 +2.8 893,810 + Psyr_0786 0.58 -0.2 893,845 + Psyr_0786 0.60 -0.1 893,845 + Psyr_0786 0.60 +1.5 893,845 + Psyr_0786 0.60 +0.1 893,845 + Psyr_0786 0.60 +0.4 893,846 - Psyr_0786 0.60 -0.8 893,846 - Psyr_0786 0.60 -1.3 894,214 + Psyr_0786 0.77 +0.6 894,214 + Psyr_0786 0.77 +1.2 894,214 + Psyr_0786 0.77 +0.2 894,214 + Psyr_0786 0.77 -0.2 894,215 - Psyr_0786 0.77 +0.3 894,215 - -0.9 894,215 - Psyr_0786 0.77 +1.2 894,509 - +1.2 894,682 + -0.2 894,682 + +0.5 894,683 - +0.3 894,683 - -0.7 894,683 - +2.9 894,683 - +0.3 894,685 + +0.2 894,685 + +1.9 894,685 + -1.1 894,686 - -1.7 894,686 - +0.0 894,722 - +0.3 894,739 + +1.1 894,758 + -0.9 894,758 + +1.0 894,758 + -0.6 894,758 + +0.7 894,758 + +0.3 894,758 + -1.6 894,758 + -1.3 894,758 + +2.9 894,759 - -2.3 894,759 - +0.9 894,759 - -0.7 894,759 - -1.1 894,762 + +0.1 894,762 + +0.6 894,762 + +0.0 894,763 - -0.9 894,763 - +0.7 894,763 - +1.0 894,961 + Psyr_0787 0.77 +0.7 894,961 + Psyr_0787 0.77 +0.9 894,961 + Psyr_0787 0.77 -0.8 894,962 - Psyr_0787 0.77 -1.0 894,962 - Psyr_0787 0.77 +0.9 894,962 - Psyr_0787 0.77 +0.3 894,962 - Psyr_0787 0.77 -0.2 894,962 - Psyr_0787 0.77 +3.3 894,962 - Psyr_0787 0.77 -1.6 894,962 - Psyr_0787 0.77 -3.0 894,962 - Psyr_0787 0.77 -0.6 894,982 - Psyr_0787 0.84 -0.3 894,982 - Psyr_0787 0.84 +0.4 894,982 - Psyr_0787 0.84 -1.8 895,200 + Psyr_0788 0.40 +0.5 895,200 + Psyr_0788 0.40 -1.8 895,200 + Psyr_0788 0.40 +0.5 895,200 + Psyr_0788 0.40 +0.8 895,200 + Psyr_0788 0.40 -1.5 895,200 + Psyr_0788 0.40 -1.5 895,200 + Psyr_0788 0.40 -0.8 895,201 - Psyr_0788 0.40 +0.3 895,201 - Psyr_0788 0.40 +1.5 895,201 - Psyr_0788 0.40 +0.5 895,341 + Psyr_0788 0.78 +2.0 895,406 + +0.1 895,406 + +0.8 895,407 - -0.3 895,407 - +2.5 895,407 - +1.5 895,407 - +0.5 895,407 - +0.4 895,407 - +0.3 895,415 - +0.0 895,425 + +0.4 895,425 + +0.3 895,425 + -0.8 895,425 + -0.9 895,426 - -0.8 895,426 - -0.7 895,426 - +2.6 895,426 - +1.5 895,426 - -2.4 895,509 + +0.7 895,509 + +0.2 895,510 - +0.5 895,513 + +0.8 895,514 - -0.4 895,514 - -0.9 895,514 - +0.3 895,619 + Psyr_0789 0.16 -0.9 895,620 - Psyr_0789 0.16 +0.1 895,620 - Psyr_0789 0.16 +0.5
Or see this region's nucleotide sequence