Experiment: library passed through aphids in food, 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0688 and Psyr_0689 are separated by 158 nucleotides Psyr_0689 and Psyr_0690 are separated by 33 nucleotides
Psyr_0688: Psyr_0688 - transcriptional regulator, LysR family, at 791,479 to 792,426
_0688
Psyr_0689: Psyr_0689 - methylmalonate-semialdehyde dehydrogenase (acylating), at 792,585 to 794,111
_0689
Psyr_0690: Psyr_0690 - 3-hydroxyisobutyrate dehydrogenase, at 794,145 to 795,032
_0690
Position (kb) 792
793
794
795 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 791.603 kb on + strand, within Psyr_0688 at 791.603 kb on + strand, within Psyr_0688 at 791.603 kb on + strand, within Psyr_0688 at 791.604 kb on - strand, within Psyr_0688 at 791.604 kb on - strand, within Psyr_0688 at 791.604 kb on - strand, within Psyr_0688 at 791.604 kb on - strand, within Psyr_0688 at 791.604 kb on - strand, within Psyr_0688 at 791.604 kb on - strand, within Psyr_0688 at 791.724 kb on - strand, within Psyr_0688 at 791.786 kb on + strand, within Psyr_0688 at 791.786 kb on + strand, within Psyr_0688 at 791.786 kb on + strand, within Psyr_0688 at 791.786 kb on + strand, within Psyr_0688 at 791.786 kb on + strand, within Psyr_0688 at 791.786 kb on + strand, within Psyr_0688 at 791.786 kb on + strand, within Psyr_0688 at 791.786 kb on + strand, within Psyr_0688 at 791.786 kb on + strand, within Psyr_0688 at 791.787 kb on - strand, within Psyr_0688 at 791.787 kb on - strand, within Psyr_0688 at 791.787 kb on - strand, within Psyr_0688 at 791.787 kb on - strand, within Psyr_0688 at 791.787 kb on - strand, within Psyr_0688 at 791.787 kb on - strand, within Psyr_0688 at 791.787 kb on - strand, within Psyr_0688 at 791.787 kb on - strand, within Psyr_0688 at 791.787 kb on - strand, within Psyr_0688 at 791.787 kb on - strand, within Psyr_0688 at 791.787 kb on - strand, within Psyr_0688 at 791.822 kb on + strand, within Psyr_0688 at 791.822 kb on + strand, within Psyr_0688 at 791.822 kb on + strand, within Psyr_0688 at 791.822 kb on + strand, within Psyr_0688 at 791.823 kb on - strand, within Psyr_0688 at 791.823 kb on - strand, within Psyr_0688 at 791.823 kb on - strand, within Psyr_0688 at 791.885 kb on + strand, within Psyr_0688 at 791.901 kb on - strand, within Psyr_0688 at 791.939 kb on + strand, within Psyr_0688 at 791.939 kb on + strand, within Psyr_0688 at 791.939 kb on + strand, within Psyr_0688 at 791.939 kb on + strand, within Psyr_0688 at 791.939 kb on + strand, within Psyr_0688 at 791.940 kb on - strand at 791.940 kb on - strand, within Psyr_0688 at 791.940 kb on - strand, within Psyr_0688 at 792.001 kb on + strand, within Psyr_0688 at 792.001 kb on + strand, within Psyr_0688 at 792.001 kb on + strand, within Psyr_0688 at 792.001 kb on + strand, within Psyr_0688 at 792.001 kb on + strand, within Psyr_0688 at 792.002 kb on - strand, within Psyr_0688 at 792.002 kb on - strand, within Psyr_0688 at 792.002 kb on - strand, within Psyr_0688 at 792.002 kb on - strand, within Psyr_0688 at 792.194 kb on + strand, within Psyr_0688 at 792.195 kb on - strand, within Psyr_0688 at 792.301 kb on + strand, within Psyr_0688 at 792.311 kb on + strand, within Psyr_0688 at 792.311 kb on + strand, within Psyr_0688 at 792.312 kb on - strand, within Psyr_0688 at 792.312 kb on - strand, within Psyr_0688 at 792.312 kb on - strand, within Psyr_0688 at 792.312 kb on - strand, within Psyr_0688 at 792.472 kb on + strand at 792.472 kb on + strand at 792.472 kb on + strand at 792.472 kb on + strand at 792.472 kb on + strand at 792.472 kb on + strand at 792.473 kb on - strand at 792.473 kb on - strand at 792.473 kb on - strand at 792.473 kb on - strand at 792.473 kb on - strand at 792.629 kb on - strand at 792.812 kb on + strand, within Psyr_0689 at 792.813 kb on - strand, within Psyr_0689 at 792.813 kb on - strand, within Psyr_0689 at 792.813 kb on - strand, within Psyr_0689 at 792.813 kb on - strand, within Psyr_0689 at 792.863 kb on + strand, within Psyr_0689 at 792.864 kb on - strand, within Psyr_0689 at 792.875 kb on - strand, within Psyr_0689 at 792.921 kb on - strand, within Psyr_0689 at 793.017 kb on + strand, within Psyr_0689 at 793.017 kb on + strand, within Psyr_0689 at 793.017 kb on + strand, within Psyr_0689 at 793.017 kb on + strand, within Psyr_0689 at 793.017 kb on + strand, within Psyr_0689 at 793.017 kb on + strand, within Psyr_0689 at 793.017 kb on + strand, within Psyr_0689 at 793.017 kb on + strand, within Psyr_0689 at 793.017 kb on + strand, within Psyr_0689 at 793.018 kb on - strand, within Psyr_0689 at 793.018 kb on - strand, within Psyr_0689 at 793.018 kb on - strand, within Psyr_0689 at 793.018 kb on - strand, within Psyr_0689 at 793.018 kb on - strand, within Psyr_0689 at 793.018 kb on - strand, within Psyr_0689 at 793.018 kb on - strand, within Psyr_0689 at 793.018 kb on - strand, within Psyr_0689 at 793.018 kb on - strand, within Psyr_0689 at 793.018 kb on - strand, within Psyr_0689 at 793.018 kb on - strand, within Psyr_0689 at 793.018 kb on - strand, within Psyr_0689 at 793.018 kb on - strand, within Psyr_0689 at 793.018 kb on - strand, within Psyr_0689 at 793.018 kb on - strand, within Psyr_0689 at 793.018 kb on - strand, within Psyr_0689 at 793.018 kb on - strand, within Psyr_0689 at 793.020 kb on - strand, within Psyr_0689 at 793.121 kb on + strand, within Psyr_0689 at 793.121 kb on + strand, within Psyr_0689 at 793.121 kb on + strand, within Psyr_0689 at 793.121 kb on + strand, within Psyr_0689 at 793.121 kb on + strand, within Psyr_0689 at 793.121 kb on + strand, within Psyr_0689 at 793.121 kb on + strand, within Psyr_0689 at 793.121 kb on + strand, within Psyr_0689 at 793.122 kb on - strand, within Psyr_0689 at 793.122 kb on - strand, within Psyr_0689 at 793.122 kb on - strand, within Psyr_0689 at 793.122 kb on - strand, within Psyr_0689 at 793.122 kb on - strand, within Psyr_0689 at 793.122 kb on - strand, within Psyr_0689 at 793.122 kb on - strand, within Psyr_0689 at 793.122 kb on - strand, within Psyr_0689 at 793.317 kb on + strand, within Psyr_0689 at 793.317 kb on + strand, within Psyr_0689 at 793.387 kb on + strand, within Psyr_0689 at 793.427 kb on - strand, within Psyr_0689 at 793.749 kb on + strand, within Psyr_0689 at 793.749 kb on + strand, within Psyr_0689 at 793.749 kb on + strand, within Psyr_0689 at 793.749 kb on + strand, within Psyr_0689 at 793.749 kb on + strand, within Psyr_0689 at 793.749 kb on + strand, within Psyr_0689 at 793.750 kb on - strand, within Psyr_0689 at 793.750 kb on - strand, within Psyr_0689 at 793.750 kb on - strand, within Psyr_0689 at 793.925 kb on + strand, within Psyr_0689 at 793.926 kb on - strand, within Psyr_0689 at 794.002 kb on - strand at 794.025 kb on + strand at 794.025 kb on + strand at 794.025 kb on + strand at 794.025 kb on + strand at 794.025 kb on + strand at 794.025 kb on + strand at 794.025 kb on + strand at 794.026 kb on - strand at 794.026 kb on - strand at 794.026 kb on - strand at 794.026 kb on - strand at 794.026 kb on - strand at 794.026 kb on - strand at 794.026 kb on - strand at 794.174 kb on + strand at 794.365 kb on - strand, within Psyr_0690 at 794.762 kb on + strand, within Psyr_0690 at 794.763 kb on - strand, within Psyr_0690 at 794.763 kb on - strand, within Psyr_0690 at 794.796 kb on + strand, within Psyr_0690 at 794.797 kb on - strand, within Psyr_0690 at 794.797 kb on - strand, within Psyr_0690 at 794.797 kb on - strand, within Psyr_0690 at 794.797 kb on - strand, within Psyr_0690 at 794.797 kb on - strand, within Psyr_0690 at 794.797 kb on - strand, within Psyr_0690 at 794.955 kb on + strand at 794.956 kb on - strand at 795.030 kb on + strand at 795.030 kb on + strand at 795.031 kb on - strand at 795.031 kb on - strand at 795.031 kb on - strand at 795.031 kb on - strand at 795.031 kb on - strand at 795.031 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours remove 791,603 + Psyr_0688 0.13 +0.0 791,603 + Psyr_0688 0.13 -0.9 791,603 + Psyr_0688 0.13 -0.0 791,604 - Psyr_0688 0.13 +1.9 791,604 - Psyr_0688 0.13 -1.0 791,604 - Psyr_0688 0.13 +0.9 791,604 - Psyr_0688 0.13 -0.8 791,604 - Psyr_0688 0.13 -0.2 791,604 - Psyr_0688 0.13 -1.1 791,724 - Psyr_0688 0.26 +1.6 791,786 + Psyr_0688 0.32 +0.8 791,786 + Psyr_0688 0.32 -1.3 791,786 + Psyr_0688 0.32 -0.6 791,786 + Psyr_0688 0.32 -1.1 791,786 + Psyr_0688 0.32 -1.5 791,786 + Psyr_0688 0.32 +0.1 791,786 + Psyr_0688 0.32 -0.6 791,786 + Psyr_0688 0.32 -0.3 791,786 + Psyr_0688 0.32 -0.2 791,787 - Psyr_0688 0.32 -1.5 791,787 - Psyr_0688 0.32 -1.4 791,787 - Psyr_0688 0.32 -0.1 791,787 - Psyr_0688 0.32 -0.7 791,787 - Psyr_0688 0.32 +0.6 791,787 - Psyr_0688 0.32 -1.1 791,787 - Psyr_0688 0.32 -1.3 791,787 - Psyr_0688 0.32 -2.3 791,787 - Psyr_0688 0.32 +0.1 791,787 - Psyr_0688 0.32 -0.9 791,787 - Psyr_0688 0.32 -1.6 791,822 + Psyr_0688 0.36 -0.3 791,822 + Psyr_0688 0.36 +0.2 791,822 + Psyr_0688 0.36 -2.8 791,822 + Psyr_0688 0.36 -0.2 791,823 - Psyr_0688 0.36 -1.1 791,823 - Psyr_0688 0.36 -3.2 791,823 - Psyr_0688 0.36 +3.8 791,885 + Psyr_0688 0.43 -0.5 791,901 - Psyr_0688 0.45 -0.8 791,939 + Psyr_0688 0.49 +2.8 791,939 + Psyr_0688 0.49 -0.8 791,939 + Psyr_0688 0.49 +1.2 791,939 + Psyr_0688 0.49 -0.6 791,939 + Psyr_0688 0.49 -1.8 791,940 - +0.5 791,940 - Psyr_0688 0.49 -0.2 791,940 - Psyr_0688 0.49 -1.8 792,001 + Psyr_0688 0.55 +1.2 792,001 + Psyr_0688 0.55 -1.9 792,001 + Psyr_0688 0.55 +0.3 792,001 + Psyr_0688 0.55 -1.7 792,001 + Psyr_0688 0.55 -0.2 792,002 - Psyr_0688 0.55 +1.1 792,002 - Psyr_0688 0.55 +1.0 792,002 - Psyr_0688 0.55 +1.0 792,002 - Psyr_0688 0.55 +0.2 792,194 + Psyr_0688 0.75 -0.9 792,195 - Psyr_0688 0.76 -1.4 792,301 + Psyr_0688 0.87 -0.9 792,311 + Psyr_0688 0.88 +0.1 792,311 + Psyr_0688 0.88 -0.4 792,312 - Psyr_0688 0.88 -0.9 792,312 - Psyr_0688 0.88 +1.5 792,312 - Psyr_0688 0.88 -0.2 792,312 - Psyr_0688 0.88 -0.3 792,472 + +0.3 792,472 + +0.3 792,472 + -0.3 792,472 + -0.5 792,472 + -0.1 792,472 + +0.9 792,473 - +0.2 792,473 - -0.1 792,473 - +0.8 792,473 - +0.3 792,473 - +1.1 792,629 - -0.6 792,812 + Psyr_0689 0.15 -1.3 792,813 - Psyr_0689 0.15 -1.2 792,813 - Psyr_0689 0.15 -0.8 792,813 - Psyr_0689 0.15 +1.8 792,813 - Psyr_0689 0.15 -0.8 792,863 + Psyr_0689 0.18 -0.1 792,864 - Psyr_0689 0.18 -0.2 792,875 - Psyr_0689 0.19 -0.9 792,921 - Psyr_0689 0.22 -0.2 793,017 + Psyr_0689 0.28 -2.1 793,017 + Psyr_0689 0.28 +1.3 793,017 + Psyr_0689 0.28 +0.9 793,017 + Psyr_0689 0.28 -0.1 793,017 + Psyr_0689 0.28 +0.6 793,017 + Psyr_0689 0.28 -1.7 793,017 + Psyr_0689 0.28 -0.5 793,017 + Psyr_0689 0.28 +0.9 793,017 + Psyr_0689 0.28 +0.7 793,018 - Psyr_0689 0.28 +0.1 793,018 - Psyr_0689 0.28 -1.9 793,018 - Psyr_0689 0.28 -2.2 793,018 - Psyr_0689 0.28 -0.1 793,018 - Psyr_0689 0.28 -1.1 793,018 - Psyr_0689 0.28 -0.6 793,018 - Psyr_0689 0.28 +0.3 793,018 - Psyr_0689 0.28 -0.8 793,018 - Psyr_0689 0.28 -0.5 793,018 - Psyr_0689 0.28 +1.1 793,018 - Psyr_0689 0.28 +0.6 793,018 - Psyr_0689 0.28 -1.4 793,018 - Psyr_0689 0.28 +0.2 793,018 - Psyr_0689 0.28 -0.2 793,018 - Psyr_0689 0.28 -0.5 793,018 - Psyr_0689 0.28 -1.9 793,018 - Psyr_0689 0.28 +0.2 793,020 - Psyr_0689 0.28 -0.5 793,121 + Psyr_0689 0.35 -0.3 793,121 + Psyr_0689 0.35 +0.9 793,121 + Psyr_0689 0.35 +0.1 793,121 + Psyr_0689 0.35 -1.7 793,121 + Psyr_0689 0.35 -2.4 793,121 + Psyr_0689 0.35 -2.0 793,121 + Psyr_0689 0.35 -1.0 793,121 + Psyr_0689 0.35 +1.3 793,122 - Psyr_0689 0.35 -0.9 793,122 - Psyr_0689 0.35 -1.2 793,122 - Psyr_0689 0.35 +0.1 793,122 - Psyr_0689 0.35 -1.0 793,122 - Psyr_0689 0.35 +0.5 793,122 - Psyr_0689 0.35 -2.2 793,122 - Psyr_0689 0.35 -2.2 793,122 - Psyr_0689 0.35 -0.6 793,317 + Psyr_0689 0.48 -0.1 793,317 + Psyr_0689 0.48 +0.1 793,387 + Psyr_0689 0.53 -0.6 793,427 - Psyr_0689 0.55 -1.2 793,749 + Psyr_0689 0.76 -2.1 793,749 + Psyr_0689 0.76 +0.5 793,749 + Psyr_0689 0.76 +1.3 793,749 + Psyr_0689 0.76 +0.4 793,749 + Psyr_0689 0.76 +1.5 793,749 + Psyr_0689 0.76 -1.5 793,750 - Psyr_0689 0.76 +1.0 793,750 - Psyr_0689 0.76 -0.0 793,750 - Psyr_0689 0.76 +0.6 793,925 + Psyr_0689 0.88 -0.1 793,926 - Psyr_0689 0.88 +1.3 794,002 - +0.1 794,025 + -0.0 794,025 + +1.2 794,025 + -0.8 794,025 + -1.9 794,025 + -1.5 794,025 + -0.2 794,025 + -1.1 794,026 - -1.9 794,026 - -0.8 794,026 - +0.8 794,026 - -1.3 794,026 - +0.3 794,026 - -0.5 794,026 - +0.6 794,174 + +0.7 794,365 - Psyr_0690 0.25 -0.3 794,762 + Psyr_0690 0.69 -2.2 794,763 - Psyr_0690 0.70 +0.2 794,763 - Psyr_0690 0.70 -1.8 794,796 + Psyr_0690 0.73 +0.9 794,797 - Psyr_0690 0.73 +1.8 794,797 - Psyr_0690 0.73 +1.6 794,797 - Psyr_0690 0.73 -0.1 794,797 - Psyr_0690 0.73 -0.0 794,797 - Psyr_0690 0.73 -0.0 794,797 - Psyr_0690 0.73 -0.1 794,955 + +2.1 794,956 - -2.7 795,030 + -0.3 795,030 + +1.7 795,031 - +1.8 795,031 - +0.9 795,031 - -1.8 795,031 - +0.1 795,031 - -0.4 795,031 - +0.3
Or see this region's nucleotide sequence