Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0626

Experiment: library passed through aphids in food, 72 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0624 and Psyr_0625 are separated by 110 nucleotidesPsyr_0625 and Psyr_0626 are separated by 3 nucleotidesPsyr_0626 and Psyr_0627 are separated by 241 nucleotides Psyr_0624: Psyr_0624 - Inorganic diphosphatase, at 713,778 to 714,305 _0624 Psyr_0625: Psyr_0625 - Protein of unknown function DUF980, at 714,416 to 715,225 _0625 Psyr_0626: Psyr_0626 - DedA, at 715,229 to 715,876 _0626 Psyr_0627: Psyr_0627 - Ethanolamine ammonia-lyase light chain, at 716,118 to 716,966 _0627 Position (kb) 715 716Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 714.356 kb on - strandat 714.373 kb on - strandat 714.373 kb on - strandat 714.379 kb on - strandat 714.379 kb on - strandat 714.379 kb on - strandat 714.379 kb on - strandat 714.379 kb on - strandat 714.483 kb on + strandat 714.504 kb on + strand, within Psyr_0625at 714.505 kb on - strand, within Psyr_0625at 714.552 kb on + strand, within Psyr_0625at 714.552 kb on + strand, within Psyr_0625at 714.553 kb on - strand, within Psyr_0625at 714.597 kb on + strand, within Psyr_0625at 714.598 kb on - strand, within Psyr_0625at 714.773 kb on + strand, within Psyr_0625at 714.773 kb on + strand, within Psyr_0625at 714.773 kb on + strand, within Psyr_0625at 714.773 kb on + strand, within Psyr_0625at 714.773 kb on + strand, within Psyr_0625at 714.773 kb on + strand, within Psyr_0625at 714.773 kb on + strand, within Psyr_0625at 714.773 kb on + strand, within Psyr_0625at 714.774 kb on - strand, within Psyr_0625at 714.774 kb on - strand, within Psyr_0625at 714.774 kb on - strand, within Psyr_0625at 714.774 kb on - strand, within Psyr_0625at 714.780 kb on + strand, within Psyr_0625at 714.780 kb on + strand, within Psyr_0625at 714.781 kb on - strand, within Psyr_0625at 714.806 kb on + strand, within Psyr_0625at 715.133 kb on - strand, within Psyr_0625at 715.160 kb on + strandat 715.160 kb on + strandat 715.160 kb on + strandat 715.268 kb on + strandat 715.268 kb on + strandat 715.527 kb on + strand, within Psyr_0626at 715.528 kb on - strand, within Psyr_0626at 715.552 kb on - strand, within Psyr_0626at 715.552 kb on - strand, within Psyr_0626at 715.552 kb on - strand, within Psyr_0626at 715.552 kb on - strand, within Psyr_0626at 715.620 kb on + strand, within Psyr_0626at 715.620 kb on + strand, within Psyr_0626at 715.620 kb on + strand, within Psyr_0626at 715.620 kb on + strand, within Psyr_0626at 715.620 kb on + strand, within Psyr_0626at 715.620 kb on + strand, within Psyr_0626at 715.620 kb on + strand, within Psyr_0626at 715.620 kb on + strand, within Psyr_0626at 715.620 kb on + strand, within Psyr_0626at 715.621 kb on - strand, within Psyr_0626at 715.621 kb on - strand, within Psyr_0626at 715.621 kb on - strand, within Psyr_0626at 715.621 kb on - strand, within Psyr_0626at 715.621 kb on - strand, within Psyr_0626at 715.621 kb on - strand, within Psyr_0626at 715.621 kb on - strand, within Psyr_0626at 715.621 kb on - strand, within Psyr_0626at 715.621 kb on - strand, within Psyr_0626at 715.621 kb on - strand, within Psyr_0626at 715.621 kb on - strand, within Psyr_0626at 715.794 kb on + strand, within Psyr_0626at 715.795 kb on - strand, within Psyr_0626at 715.804 kb on + strand, within Psyr_0626at 715.805 kb on - strand, within Psyr_0626at 715.805 kb on - strand, within Psyr_0626at 715.805 kb on - strand, within Psyr_0626at 715.805 kb on - strand, within Psyr_0626at 715.805 kb on - strand, within Psyr_0626at 715.805 kb on - strand, within Psyr_0626at 715.805 kb on - strand, within Psyr_0626at 715.809 kb on + strand, within Psyr_0626at 715.809 kb on + strand, within Psyr_0626at 715.809 kb on + strand, within Psyr_0626at 715.810 kb on - strand, within Psyr_0626at 715.810 kb on - strand, within Psyr_0626at 715.810 kb on - strand, within Psyr_0626at 715.810 kb on - strand, within Psyr_0626at 715.852 kb on + strandat 715.852 kb on + strandat 715.853 kb on - strandat 715.853 kb on - strandat 715.939 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.974 kb on - strandat 716.003 kb on + strandat 716.003 kb on + strandat 716.004 kb on - strandat 716.004 kb on - strandat 716.035 kb on + strandat 716.035 kb on + strandat 716.036 kb on - strandat 716.036 kb on - strandat 716.049 kb on + strandat 716.102 kb on + strandat 716.102 kb on + strandat 716.103 kb on - strandat 716.269 kb on + strand, within Psyr_0627at 716.269 kb on + strand, within Psyr_0627at 716.270 kb on - strand, within Psyr_0627at 716.270 kb on - strand, within Psyr_0627at 716.270 kb on - strand, within Psyr_0627at 716.270 kb on - strand, within Psyr_0627at 716.270 kb on - strand, within Psyr_0627at 716.327 kb on + strand, within Psyr_0627at 716.327 kb on + strand, within Psyr_0627at 716.327 kb on + strand, within Psyr_0627at 716.328 kb on - strand, within Psyr_0627at 716.328 kb on - strand, within Psyr_0627at 716.328 kb on - strand, within Psyr_0627at 716.328 kb on - strand, within Psyr_0627at 716.328 kb on - strand, within Psyr_0627at 716.328 kb on - strand, within Psyr_0627at 716.368 kb on + strand, within Psyr_0627at 716.368 kb on + strand, within Psyr_0627at 716.368 kb on + strand, within Psyr_0627at 716.368 kb on + strand, within Psyr_0627at 716.369 kb on - strand, within Psyr_0627at 716.369 kb on - strand, within Psyr_0627at 716.369 kb on - strand, within Psyr_0627at 716.369 kb on - strand, within Psyr_0627at 716.369 kb on - strand, within Psyr_0627at 716.377 kb on + strand, within Psyr_0627at 716.377 kb on + strand, within Psyr_0627at 716.377 kb on + strand, within Psyr_0627at 716.377 kb on + strand, within Psyr_0627at 716.378 kb on - strand, within Psyr_0627at 716.611 kb on - strand, within Psyr_0627at 716.611 kb on - strand, within Psyr_0627at 716.648 kb on - strand, within Psyr_0627at 716.710 kb on + strand, within Psyr_0627at 716.710 kb on + strand, within Psyr_0627at 716.710 kb on + strand, within Psyr_0627at 716.710 kb on + strand, within Psyr_0627at 716.710 kb on + strand, within Psyr_0627at 716.710 kb on + strand, within Psyr_0627at 716.710 kb on + strand, within Psyr_0627at 716.710 kb on + strand, within Psyr_0627at 716.711 kb on - strand, within Psyr_0627at 716.711 kb on - strand, within Psyr_0627at 716.711 kb on - strand, within Psyr_0627

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Per-strain Table

Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours
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714,356 - +0.6
714,373 - -1.1
714,373 - -0.4
714,379 - +0.9
714,379 - +1.5
714,379 - +0.1
714,379 - -1.4
714,379 - +1.9
714,483 + -0.1
714,504 + Psyr_0625 0.11 +3.4
714,505 - Psyr_0625 0.11 -2.1
714,552 + Psyr_0625 0.17 -0.2
714,552 + Psyr_0625 0.17 +0.3
714,553 - Psyr_0625 0.17 +0.8
714,597 + Psyr_0625 0.22 +3.3
714,598 - Psyr_0625 0.22 -1.5
714,773 + Psyr_0625 0.44 -0.3
714,773 + Psyr_0625 0.44 +0.3
714,773 + Psyr_0625 0.44 -0.0
714,773 + Psyr_0625 0.44 +0.6
714,773 + Psyr_0625 0.44 -3.8
714,773 + Psyr_0625 0.44 -0.6
714,773 + Psyr_0625 0.44 +1.1
714,773 + Psyr_0625 0.44 -2.6
714,774 - Psyr_0625 0.44 +0.5
714,774 - Psyr_0625 0.44 -0.3
714,774 - Psyr_0625 0.44 -0.7
714,774 - Psyr_0625 0.44 -0.3
714,780 + Psyr_0625 0.45 +1.0
714,780 + Psyr_0625 0.45 -0.8
714,781 - Psyr_0625 0.45 +0.6
714,806 + Psyr_0625 0.48 +0.5
715,133 - Psyr_0625 0.89 +0.9
715,160 + +0.2
715,160 + -0.1
715,160 + +0.5
715,268 + +0.4
715,268 + +1.4
715,527 + Psyr_0626 0.46 -2.5
715,528 - Psyr_0626 0.46 -1.4
715,552 - Psyr_0626 0.50 -3.5
715,552 - Psyr_0626 0.50 -0.4
715,552 - Psyr_0626 0.50 -1.4
715,552 - Psyr_0626 0.50 -2.0
715,620 + Psyr_0626 0.60 -0.0
715,620 + Psyr_0626 0.60 -2.0
715,620 + Psyr_0626 0.60 -0.5
715,620 + Psyr_0626 0.60 -0.8
715,620 + Psyr_0626 0.60 -2.1
715,620 + Psyr_0626 0.60 -1.2
715,620 + Psyr_0626 0.60 -1.2
715,620 + Psyr_0626 0.60 -2.1
715,620 + Psyr_0626 0.60 -0.7
715,621 - Psyr_0626 0.60 -0.9
715,621 - Psyr_0626 0.60 -1.4
715,621 - Psyr_0626 0.60 -3.4
715,621 - Psyr_0626 0.60 -2.4
715,621 - Psyr_0626 0.60 -2.0
715,621 - Psyr_0626 0.60 -2.4
715,621 - Psyr_0626 0.60 +0.4
715,621 - Psyr_0626 0.60 +0.7
715,621 - Psyr_0626 0.60 -0.0
715,621 - Psyr_0626 0.60 +3.0
715,621 - Psyr_0626 0.60 -2.3
715,794 + Psyr_0626 0.87 +0.8
715,795 - Psyr_0626 0.87 -1.0
715,804 + Psyr_0626 0.89 -1.6
715,805 - Psyr_0626 0.89 -0.4
715,805 - Psyr_0626 0.89 +3.2
715,805 - Psyr_0626 0.89 -1.6
715,805 - Psyr_0626 0.89 -1.7
715,805 - Psyr_0626 0.89 -1.3
715,805 - Psyr_0626 0.89 -1.7
715,805 - Psyr_0626 0.89 -0.7
715,809 + Psyr_0626 0.90 -1.5
715,809 + Psyr_0626 0.90 +0.8
715,809 + Psyr_0626 0.90 -0.6
715,810 - Psyr_0626 0.90 -1.0
715,810 - Psyr_0626 0.90 -0.2
715,810 - Psyr_0626 0.90 -0.6
715,810 - Psyr_0626 0.90 -0.5
715,852 + -0.4
715,852 + -1.1
715,853 - -1.3
715,853 - -1.5
715,939 + -0.5
715,941 + -1.0
715,941 + -1.2
715,941 + -0.3
715,941 + +3.1
715,941 + +0.9
715,941 + -0.4
715,941 + -1.1
715,941 + -1.1
715,941 + -0.1
715,941 + +1.7
715,941 + -1.0
715,941 + +0.0
715,941 + -0.1
715,941 + +0.5
715,941 + -0.9
715,942 - -1.2
715,942 - -1.7
715,942 - +1.0
715,942 - +0.3
715,942 - +0.1
715,942 - -0.5
715,942 - +2.5
715,942 - -0.4
715,942 - -0.4
715,942 - -1.5
715,942 - -1.4
715,942 - +0.2
715,942 - -0.7
715,974 - +0.9
716,003 + -1.3
716,003 + +0.5
716,004 - -0.4
716,004 - -0.9
716,035 + -0.1
716,035 + -0.1
716,036 - -1.0
716,036 - +0.1
716,049 + +0.2
716,102 + +0.0
716,102 + +0.9
716,103 - +0.3
716,269 + Psyr_0627 0.18 -1.4
716,269 + Psyr_0627 0.18 -0.9
716,270 - Psyr_0627 0.18 -0.9
716,270 - Psyr_0627 0.18 +0.8
716,270 - Psyr_0627 0.18 +0.7
716,270 - Psyr_0627 0.18 +0.0
716,270 - Psyr_0627 0.18 +1.5
716,327 + Psyr_0627 0.25 +0.4
716,327 + Psyr_0627 0.25 +0.2
716,327 + Psyr_0627 0.25 -0.2
716,328 - Psyr_0627 0.25 -2.1
716,328 - Psyr_0627 0.25 -0.0
716,328 - Psyr_0627 0.25 +0.2
716,328 - Psyr_0627 0.25 -2.1
716,328 - Psyr_0627 0.25 +0.1
716,328 - Psyr_0627 0.25 -0.1
716,368 + Psyr_0627 0.29 -0.4
716,368 + Psyr_0627 0.29 -0.5
716,368 + Psyr_0627 0.29 -0.1
716,368 + Psyr_0627 0.29 +0.3
716,369 - Psyr_0627 0.30 -1.3
716,369 - Psyr_0627 0.30 +1.1
716,369 - Psyr_0627 0.30 -0.4
716,369 - Psyr_0627 0.30 -0.6
716,369 - Psyr_0627 0.30 -2.5
716,377 + Psyr_0627 0.31 +0.4
716,377 + Psyr_0627 0.31 +0.2
716,377 + Psyr_0627 0.31 -0.1
716,377 + Psyr_0627 0.31 -0.5
716,378 - Psyr_0627 0.31 -0.7
716,611 - Psyr_0627 0.58 +0.7
716,611 - Psyr_0627 0.58 +0.5
716,648 - Psyr_0627 0.62 -1.7
716,710 + Psyr_0627 0.70 +2.8
716,710 + Psyr_0627 0.70 -0.7
716,710 + Psyr_0627 0.70 -1.2
716,710 + Psyr_0627 0.70 +0.6
716,710 + Psyr_0627 0.70 -1.3
716,710 + Psyr_0627 0.70 -0.3
716,710 + Psyr_0627 0.70 -1.2
716,710 + Psyr_0627 0.70 -1.0
716,711 - Psyr_0627 0.70 -1.1
716,711 - Psyr_0627 0.70 -0.3
716,711 - Psyr_0627 0.70 -0.8

Or see this region's nucleotide sequence