Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0543

Experiment: library passed through aphids in food, 72 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0542 and Psyr_0543 are separated by 226 nucleotidesPsyr_0543 and Psyr_0544 are separated by 426 nucleotides Psyr_0542: Psyr_0542 - Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal, at 611,935 to 613,080 _0542 Psyr_0543: Psyr_0543 - Type I secretion outer membrane protein, TolC, at 613,307 to 614,746 _0543 Psyr_0544: Psyr_0544 - hydroxymethylpyrimidine synthase, at 615,173 to 617,062 _0544 Position (kb) 613 614 615Strain fitness (log2 ratio) -2 -1 0 1 2 3at 613.137 kb on - strandat 613.386 kb on + strandat 613.386 kb on + strandat 613.476 kb on + strand, within Psyr_0543at 613.476 kb on + strand, within Psyr_0543at 613.476 kb on + strand, within Psyr_0543at 613.476 kb on + strand, within Psyr_0543at 613.476 kb on + strand, within Psyr_0543at 613.477 kb on - strand, within Psyr_0543at 613.477 kb on - strand, within Psyr_0543at 613.477 kb on - strand, within Psyr_0543at 613.483 kb on - strand, within Psyr_0543at 613.497 kb on + strand, within Psyr_0543at 613.497 kb on + strand, within Psyr_0543at 613.498 kb on - strand, within Psyr_0543at 613.498 kb on - strand, within Psyr_0543at 613.515 kb on + strand, within Psyr_0543at 613.515 kb on + strand, within Psyr_0543at 613.515 kb on + strand, within Psyr_0543at 613.515 kb on + strand, within Psyr_0543at 613.516 kb on - strand, within Psyr_0543at 613.516 kb on - strand, within Psyr_0543at 613.648 kb on + strand, within Psyr_0543at 613.737 kb on + strand, within Psyr_0543at 613.776 kb on + strand, within Psyr_0543at 613.776 kb on + strand, within Psyr_0543at 613.777 kb on - strand, within Psyr_0543at 613.845 kb on + strand, within Psyr_0543at 613.845 kb on + strand, within Psyr_0543at 613.845 kb on + strand, within Psyr_0543at 613.846 kb on - strand, within Psyr_0543at 613.890 kb on + strand, within Psyr_0543at 613.890 kb on + strand, within Psyr_0543at 613.890 kb on + strand, within Psyr_0543at 613.890 kb on + strand, within Psyr_0543at 613.890 kb on + strand, within Psyr_0543at 613.891 kb on - strand, within Psyr_0543at 613.891 kb on - strand, within Psyr_0543at 613.968 kb on + strand, within Psyr_0543at 613.969 kb on - strand, within Psyr_0543at 614.060 kb on - strand, within Psyr_0543at 614.085 kb on + strand, within Psyr_0543at 614.085 kb on + strand, within Psyr_0543at 614.085 kb on + strand, within Psyr_0543at 614.086 kb on - strand, within Psyr_0543at 614.172 kb on + strand, within Psyr_0543at 614.172 kb on + strand, within Psyr_0543at 614.173 kb on - strand, within Psyr_0543at 614.173 kb on - strand, within Psyr_0543at 614.306 kb on + strand, within Psyr_0543at 614.306 kb on + strand, within Psyr_0543at 614.316 kb on + strand, within Psyr_0543at 614.316 kb on + strand, within Psyr_0543at 614.316 kb on + strand, within Psyr_0543at 614.317 kb on - strand, within Psyr_0543at 614.317 kb on - strand, within Psyr_0543at 614.317 kb on - strand, within Psyr_0543at 614.589 kb on + strand, within Psyr_0543at 614.589 kb on + strand, within Psyr_0543at 614.774 kb on - strandat 614.777 kb on + strandat 614.777 kb on + strandat 614.778 kb on - strandat 614.814 kb on + strandat 614.814 kb on + strandat 614.814 kb on + strandat 614.815 kb on - strandat 614.815 kb on - strandat 614.815 kb on - strandat 614.849 kb on - strandat 614.857 kb on + strandat 614.857 kb on + strandat 614.876 kb on - strandat 614.876 kb on - strandat 614.876 kb on - strandat 614.904 kb on + strandat 614.904 kb on + strandat 614.904 kb on + strandat 614.905 kb on - strandat 614.905 kb on - strandat 614.905 kb on - strandat 614.905 kb on - strandat 614.937 kb on + strandat 614.938 kb on - strandat 614.938 kb on - strandat 614.938 kb on - strandat 614.938 kb on - strandat 615.062 kb on + strandat 615.063 kb on - strandat 615.141 kb on + strandat 615.141 kb on + strandat 615.141 kb on + strandat 615.142 kb on - strandat 615.178 kb on + strandat 615.178 kb on + strandat 615.178 kb on + strandat 615.178 kb on + strandat 615.178 kb on + strandat 615.178 kb on + strandat 615.180 kb on + strandat 615.180 kb on + strandat 615.180 kb on + strandat 615.180 kb on + strandat 615.181 kb on - strandat 615.181 kb on - strandat 615.181 kb on - strandat 615.181 kb on - strandat 615.181 kb on - strandat 615.181 kb on - strandat 615.266 kb on + strandat 615.267 kb on - strandat 615.371 kb on + strand, within Psyr_0544at 615.371 kb on + strand, within Psyr_0544at 615.372 kb on - strand, within Psyr_0544at 615.389 kb on + strand, within Psyr_0544at 615.605 kb on + strand, within Psyr_0544at 615.606 kb on - strand, within Psyr_0544at 615.606 kb on - strand, within Psyr_0544at 615.641 kb on + strand, within Psyr_0544at 615.641 kb on + strand, within Psyr_0544at 615.641 kb on + strand, within Psyr_0544at 615.641 kb on + strand, within Psyr_0544at 615.641 kb on + strand, within Psyr_0544at 615.641 kb on + strand, within Psyr_0544at 615.642 kb on - strand, within Psyr_0544at 615.733 kb on + strand, within Psyr_0544at 615.734 kb on - strand, within Psyr_0544

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Per-strain Table

Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours
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613,137 - +0.1
613,386 + +0.3
613,386 + +0.9
613,476 + Psyr_0543 0.12 -1.4
613,476 + Psyr_0543 0.12 -0.8
613,476 + Psyr_0543 0.12 +1.0
613,476 + Psyr_0543 0.12 -0.4
613,476 + Psyr_0543 0.12 -1.4
613,477 - Psyr_0543 0.12 +1.6
613,477 - Psyr_0543 0.12 +1.2
613,477 - Psyr_0543 0.12 +0.6
613,483 - Psyr_0543 0.12 +0.6
613,497 + Psyr_0543 0.13 +0.6
613,497 + Psyr_0543 0.13 +2.3
613,498 - Psyr_0543 0.13 +1.1
613,498 - Psyr_0543 0.13 +1.2
613,515 + Psyr_0543 0.14 +0.1
613,515 + Psyr_0543 0.14 -0.9
613,515 + Psyr_0543 0.14 -0.2
613,515 + Psyr_0543 0.14 -0.9
613,516 - Psyr_0543 0.15 +0.2
613,516 - Psyr_0543 0.15 +1.5
613,648 + Psyr_0543 0.24 +1.1
613,737 + Psyr_0543 0.30 +1.3
613,776 + Psyr_0543 0.33 -1.6
613,776 + Psyr_0543 0.33 -0.4
613,777 - Psyr_0543 0.33 -0.3
613,845 + Psyr_0543 0.37 -0.1
613,845 + Psyr_0543 0.37 +1.3
613,845 + Psyr_0543 0.37 -0.6
613,846 - Psyr_0543 0.37 +2.9
613,890 + Psyr_0543 0.40 +1.1
613,890 + Psyr_0543 0.40 -0.3
613,890 + Psyr_0543 0.40 +1.1
613,890 + Psyr_0543 0.40 +1.0
613,890 + Psyr_0543 0.40 +0.3
613,891 - Psyr_0543 0.41 -0.3
613,891 - Psyr_0543 0.41 -1.2
613,968 + Psyr_0543 0.46 +0.4
613,969 - Psyr_0543 0.46 +0.6
614,060 - Psyr_0543 0.52 -1.1
614,085 + Psyr_0543 0.54 +0.9
614,085 + Psyr_0543 0.54 +0.9
614,085 + Psyr_0543 0.54 +0.8
614,086 - Psyr_0543 0.54 -0.3
614,172 + Psyr_0543 0.60 -0.4
614,172 + Psyr_0543 0.60 +0.1
614,173 - Psyr_0543 0.60 +0.3
614,173 - Psyr_0543 0.60 +2.3
614,306 + Psyr_0543 0.69 -0.1
614,306 + Psyr_0543 0.69 +1.2
614,316 + Psyr_0543 0.70 +0.6
614,316 + Psyr_0543 0.70 -1.3
614,316 + Psyr_0543 0.70 +0.2
614,317 - Psyr_0543 0.70 +0.2
614,317 - Psyr_0543 0.70 +1.5
614,317 - Psyr_0543 0.70 -0.3
614,589 + Psyr_0543 0.89 +0.1
614,589 + Psyr_0543 0.89 -0.4
614,774 - +0.7
614,777 + +0.6
614,777 + -1.6
614,778 - -0.1
614,814 + -1.1
614,814 + -1.7
614,814 + +1.5
614,815 - +0.1
614,815 - +0.3
614,815 - -1.6
614,849 - -0.1
614,857 + +0.6
614,857 + +0.5
614,876 - +0.5
614,876 - -1.0
614,876 - +1.2
614,904 + -1.3
614,904 + -2.1
614,904 + +0.1
614,905 - -0.4
614,905 - +0.8
614,905 - -1.0
614,905 - -1.1
614,937 + -1.1
614,938 - +1.9
614,938 - +1.1
614,938 - -1.5
614,938 - -1.1
615,062 + +0.6
615,063 - -0.2
615,141 + -1.3
615,141 + -0.4
615,141 + +2.1
615,142 - -0.9
615,178 + +0.1
615,178 + +0.4
615,178 + -0.5
615,178 + -1.0
615,178 + -1.9
615,178 + +1.2
615,180 + +0.4
615,180 + +0.2
615,180 + -1.2
615,180 + +0.8
615,181 - +0.9
615,181 - -1.7
615,181 - -0.2
615,181 - +0.2
615,181 - -0.2
615,181 - -1.4
615,266 + -0.7
615,267 - +0.3
615,371 + Psyr_0544 0.10 -1.3
615,371 + Psyr_0544 0.10 +0.6
615,372 - Psyr_0544 0.11 +0.4
615,389 + Psyr_0544 0.11 -1.1
615,605 + Psyr_0544 0.23 -0.1
615,606 - Psyr_0544 0.23 +0.5
615,606 - Psyr_0544 0.23 +2.3
615,641 + Psyr_0544 0.25 -0.9
615,641 + Psyr_0544 0.25 -1.2
615,641 + Psyr_0544 0.25 -0.9
615,641 + Psyr_0544 0.25 +0.1
615,641 + Psyr_0544 0.25 +1.7
615,641 + Psyr_0544 0.25 -0.8
615,642 - Psyr_0544 0.25 -0.5
615,733 + Psyr_0544 0.30 +1.5
615,734 - Psyr_0544 0.30 -1.3

Or see this region's nucleotide sequence