Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0204

Experiment: library passed through aphids in food, 72 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0202 and Psyr_0203 are separated by 92 nucleotidesPsyr_0203 and Psyr_0204 overlap by 4 nucleotidesPsyr_0204 and Psyr_0205 are separated by 3 nucleotides Psyr_0202: Psyr_0202 - transcriptional regulator, LysR family, at 217,547 to 218,470 _0202 Psyr_0203: Psyr_0203 - outer membrane transport energization protein TonB, at 218,563 to 219,309 _0203 Psyr_0204: Psyr_0204 - outer membrane transport energization protein ExbD, at 219,306 to 219,731 _0204 Psyr_0205: Psyr_0205 - outer membrane transport energization protein ExbB, at 219,735 to 220,697 _0205 Position (kb) 219 220Strain fitness (log2 ratio) -2 -1 0 1 2 3at 218.449 kb on - strandat 218.449 kb on - strandat 218.449 kb on - strandat 218.449 kb on - strandat 218.449 kb on - strandat 218.449 kb on - strandat 218.462 kb on - strandat 218.470 kb on + strandat 218.471 kb on - strandat 218.502 kb on + strandat 218.503 kb on - strandat 218.571 kb on + strandat 219.279 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours
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218,449 - -0.3
218,449 - -0.5
218,449 - -0.5
218,449 - +0.9
218,449 - +0.2
218,449 - -0.8
218,462 - -0.3
218,470 + -1.6
218,471 - -0.7
218,502 + +0.7
218,503 - +2.9
218,571 + -1.9
219,279 - +0.1

Or see this region's nucleotide sequence