Experiment: library passed through aphids in food, 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0202 and Psyr_0203 are separated by 92 nucleotides Psyr_0203 and Psyr_0204 overlap by 4 nucleotides Psyr_0204 and Psyr_0205 are separated by 3 nucleotides
Psyr_0202: Psyr_0202 - transcriptional regulator, LysR family, at 217,547 to 218,470
_0202
Psyr_0203: Psyr_0203 - outer membrane transport energization protein TonB, at 218,563 to 219,309
_0203
Psyr_0204: Psyr_0204 - outer membrane transport energization protein ExbD, at 219,306 to 219,731
_0204
Psyr_0205: Psyr_0205 - outer membrane transport energization protein ExbB, at 219,735 to 220,697
_0205
Position (kb) 218
219
220 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 217.802 kb on + strand, within Psyr_0202 at 217.802 kb on + strand, within Psyr_0202 at 217.802 kb on + strand, within Psyr_0202 at 217.802 kb on + strand, within Psyr_0202 at 217.802 kb on + strand, within Psyr_0202 at 217.803 kb on - strand, within Psyr_0202 at 217.803 kb on - strand, within Psyr_0202 at 217.803 kb on - strand, within Psyr_0202 at 217.803 kb on - strand, within Psyr_0202 at 217.803 kb on - strand, within Psyr_0202 at 217.803 kb on - strand, within Psyr_0202 at 217.889 kb on + strand, within Psyr_0202 at 217.890 kb on - strand, within Psyr_0202 at 218.103 kb on + strand, within Psyr_0202 at 218.103 kb on + strand, within Psyr_0202 at 218.103 kb on + strand, within Psyr_0202 at 218.104 kb on - strand, within Psyr_0202 at 218.104 kb on - strand, within Psyr_0202 at 218.104 kb on - strand, within Psyr_0202 at 218.104 kb on - strand, within Psyr_0202 at 218.160 kb on + strand, within Psyr_0202 at 218.160 kb on + strand, within Psyr_0202 at 218.161 kb on - strand, within Psyr_0202 at 218.161 kb on - strand, within Psyr_0202 at 218.175 kb on + strand, within Psyr_0202 at 218.175 kb on + strand, within Psyr_0202 at 218.175 kb on + strand, within Psyr_0202 at 218.175 kb on + strand, within Psyr_0202 at 218.175 kb on + strand, within Psyr_0202 at 218.176 kb on - strand, within Psyr_0202 at 218.176 kb on - strand, within Psyr_0202 at 218.176 kb on - strand, within Psyr_0202 at 218.176 kb on - strand, within Psyr_0202 at 218.176 kb on - strand, within Psyr_0202 at 218.449 kb on - strand at 218.449 kb on - strand at 218.449 kb on - strand at 218.449 kb on - strand at 218.449 kb on - strand at 218.449 kb on - strand at 218.462 kb on - strand at 218.470 kb on + strand at 218.471 kb on - strand at 218.502 kb on + strand at 218.503 kb on - strand at 218.571 kb on + strand at 219.279 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours remove 217,802 + Psyr_0202 0.28 -0.2 217,802 + Psyr_0202 0.28 -1.3 217,802 + Psyr_0202 0.28 -1.7 217,802 + Psyr_0202 0.28 -1.4 217,802 + Psyr_0202 0.28 -1.9 217,803 - Psyr_0202 0.28 +0.2 217,803 - Psyr_0202 0.28 +0.7 217,803 - Psyr_0202 0.28 -0.9 217,803 - Psyr_0202 0.28 +0.5 217,803 - Psyr_0202 0.28 -0.2 217,803 - Psyr_0202 0.28 -1.9 217,889 + Psyr_0202 0.37 -0.8 217,890 - Psyr_0202 0.37 +1.3 218,103 + Psyr_0202 0.60 -0.1 218,103 + Psyr_0202 0.60 -1.6 218,103 + Psyr_0202 0.60 -1.2 218,104 - Psyr_0202 0.60 -1.8 218,104 - Psyr_0202 0.60 +0.7 218,104 - Psyr_0202 0.60 -0.2 218,104 - Psyr_0202 0.60 +1.8 218,160 + Psyr_0202 0.66 -2.1 218,160 + Psyr_0202 0.66 -0.1 218,161 - Psyr_0202 0.66 +0.7 218,161 - Psyr_0202 0.66 +1.6 218,175 + Psyr_0202 0.68 -2.2 218,175 + Psyr_0202 0.68 -1.9 218,175 + Psyr_0202 0.68 -0.9 218,175 + Psyr_0202 0.68 -2.3 218,175 + Psyr_0202 0.68 -0.3 218,176 - Psyr_0202 0.68 +0.8 218,176 - Psyr_0202 0.68 +0.2 218,176 - Psyr_0202 0.68 -1.2 218,176 - Psyr_0202 0.68 -0.0 218,176 - Psyr_0202 0.68 -1.6 218,449 - -0.3 218,449 - -0.5 218,449 - -0.5 218,449 - +0.9 218,449 - +0.2 218,449 - -0.8 218,462 - -0.3 218,470 + -1.6 218,471 - -0.7 218,502 + +0.7 218,503 - +2.9 218,571 + -1.9 219,279 - +0.1
Or see this region's nucleotide sequence