Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0167

Experiment: library passed through aphids in food, 72 hours

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0166 and Psyr_0167 are separated by 5 nucleotidesPsyr_0167 and Psyr_0168 are separated by 370 nucleotides Psyr_0166: Psyr_0166 - hypothetical protein, at 180,107 to 181,417 _0166 Psyr_0167: Psyr_0167 - hypothetical protein, at 181,423 to 181,845 _0167 Psyr_0168: Psyr_0168 - Phosphoenolpyruvate carboxykinase (ATP), at 182,216 to 183,760 _0168 Position (kb) 181 182Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 180.473 kb on - strand, within Psyr_0166at 180.529 kb on + strand, within Psyr_0166at 180.529 kb on + strand, within Psyr_0166at 180.533 kb on + strand, within Psyr_0166at 180.533 kb on + strand, within Psyr_0166at 180.534 kb on - strand, within Psyr_0166at 180.534 kb on - strand, within Psyr_0166at 180.534 kb on - strand, within Psyr_0166at 180.534 kb on - strand, within Psyr_0166at 180.534 kb on - strand, within Psyr_0166at 180.534 kb on - strand, within Psyr_0166at 180.534 kb on - strand, within Psyr_0166at 180.722 kb on - strand, within Psyr_0166at 180.748 kb on + strand, within Psyr_0166at 180.847 kb on - strand, within Psyr_0166at 180.847 kb on - strand, within Psyr_0166at 180.995 kb on + strand, within Psyr_0166at 180.995 kb on + strand, within Psyr_0166at 180.995 kb on + strand, within Psyr_0166at 180.995 kb on + strand, within Psyr_0166at 180.996 kb on - strand, within Psyr_0166at 180.996 kb on - strand, within Psyr_0166at 180.997 kb on + strand, within Psyr_0166at 180.997 kb on + strand, within Psyr_0166at 180.997 kb on + strand, within Psyr_0166at 180.997 kb on + strand, within Psyr_0166at 181.012 kb on + strand, within Psyr_0166at 181.016 kb on + strand, within Psyr_0166at 181.017 kb on - strand, within Psyr_0166at 181.042 kb on + strand, within Psyr_0166at 181.042 kb on + strand, within Psyr_0166at 181.092 kb on - strand, within Psyr_0166at 181.151 kb on - strand, within Psyr_0166at 181.184 kb on + strand, within Psyr_0166at 181.274 kb on + strand, within Psyr_0166at 181.286 kb on + strand, within Psyr_0166at 181.287 kb on - strandat 181.288 kb on + strandat 181.289 kb on - strandat 181.328 kb on - strandat 181.387 kb on + strandat 181.611 kb on + strand, within Psyr_0167at 181.693 kb on + strand, within Psyr_0167at 181.693 kb on + strand, within Psyr_0167at 181.693 kb on + strand, within Psyr_0167at 181.693 kb on + strand, within Psyr_0167at 181.694 kb on - strand, within Psyr_0167at 181.694 kb on - strand, within Psyr_0167at 181.696 kb on - strand, within Psyr_0167at 181.798 kb on - strand, within Psyr_0167at 181.843 kb on + strandat 181.847 kb on + strandat 181.847 kb on + strandat 181.847 kb on + strandat 181.848 kb on - strandat 181.848 kb on - strandat 181.904 kb on + strandat 181.904 kb on + strandat 181.904 kb on + strandat 181.905 kb on - strandat 182.034 kb on - strandat 182.054 kb on - strandat 182.084 kb on + strandat 182.086 kb on + strandat 182.087 kb on - strandat 182.087 kb on - strandat 182.104 kb on - strandat 182.128 kb on - strandat 182.207 kb on + strandat 182.207 kb on + strandat 182.208 kb on - strandat 182.217 kb on + strandat 182.218 kb on - strandat 182.218 kb on - strandat 182.313 kb on + strandat 182.314 kb on - strandat 182.532 kb on + strand, within Psyr_0168at 182.532 kb on + strand, within Psyr_0168at 182.532 kb on + strand, within Psyr_0168at 182.532 kb on + strand, within Psyr_0168at 182.532 kb on + strand, within Psyr_0168at 182.533 kb on - strand, within Psyr_0168at 182.533 kb on - strand, within Psyr_0168at 182.744 kb on + strand, within Psyr_0168at 182.835 kb on + strand, within Psyr_0168

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours
remove
180,473 - Psyr_0166 0.28 -0.2
180,529 + Psyr_0166 0.32 -1.4
180,529 + Psyr_0166 0.32 +0.2
180,533 + Psyr_0166 0.32 -0.0
180,533 + Psyr_0166 0.32 +1.7
180,534 - Psyr_0166 0.33 +0.3
180,534 - Psyr_0166 0.33 +1.2
180,534 - Psyr_0166 0.33 -0.8
180,534 - Psyr_0166 0.33 +1.7
180,534 - Psyr_0166 0.33 +0.6
180,534 - Psyr_0166 0.33 -0.7
180,534 - Psyr_0166 0.33 +0.8
180,722 - Psyr_0166 0.47 -0.6
180,748 + Psyr_0166 0.49 +1.7
180,847 - Psyr_0166 0.56 +1.0
180,847 - Psyr_0166 0.56 -0.7
180,995 + Psyr_0166 0.68 +1.5
180,995 + Psyr_0166 0.68 +0.4
180,995 + Psyr_0166 0.68 +0.1
180,995 + Psyr_0166 0.68 -0.4
180,996 - Psyr_0166 0.68 +0.2
180,996 - Psyr_0166 0.68 +1.4
180,997 + Psyr_0166 0.68 -1.4
180,997 + Psyr_0166 0.68 -0.7
180,997 + Psyr_0166 0.68 -0.9
180,997 + Psyr_0166 0.68 +0.5
181,012 + Psyr_0166 0.69 +0.4
181,016 + Psyr_0166 0.69 -0.4
181,017 - Psyr_0166 0.69 -0.8
181,042 + Psyr_0166 0.71 -1.4
181,042 + Psyr_0166 0.71 -1.3
181,092 - Psyr_0166 0.75 -1.1
181,151 - Psyr_0166 0.80 +0.9
181,184 + Psyr_0166 0.82 +2.4
181,274 + Psyr_0166 0.89 +0.8
181,286 + Psyr_0166 0.90 +0.5
181,287 - +0.5
181,288 + +1.3
181,289 - +0.2
181,328 - -0.0
181,387 + +0.1
181,611 + Psyr_0167 0.44 -2.3
181,693 + Psyr_0167 0.64 -2.3
181,693 + Psyr_0167 0.64 -2.7
181,693 + Psyr_0167 0.64 -2.4
181,693 + Psyr_0167 0.64 -2.9
181,694 - Psyr_0167 0.64 -1.3
181,694 - Psyr_0167 0.64 -1.5
181,696 - Psyr_0167 0.65 -1.0
181,798 - Psyr_0167 0.89 -1.4
181,843 + -0.6
181,847 + +1.6
181,847 + +0.2
181,847 + -1.1
181,848 - -0.1
181,848 - +1.5
181,904 + +0.1
181,904 + +0.0
181,904 + -0.2
181,905 - +0.0
182,034 - +0.5
182,054 - -0.2
182,084 + +0.4
182,086 + +0.2
182,087 - -1.8
182,087 - -0.5
182,104 - -0.6
182,128 - -0.3
182,207 + +0.3
182,207 + -2.3
182,208 - -0.3
182,217 + -1.6
182,218 - -0.2
182,218 - -0.2
182,313 + -1.4
182,314 - -1.6
182,532 + Psyr_0168 0.20 -1.6
182,532 + Psyr_0168 0.20 -2.7
182,532 + Psyr_0168 0.20 +0.9
182,532 + Psyr_0168 0.20 -0.1
182,532 + Psyr_0168 0.20 -2.0
182,533 - Psyr_0168 0.21 -2.7
182,533 - Psyr_0168 0.21 -0.8
182,744 + Psyr_0168 0.34 -2.6
182,835 + Psyr_0168 0.40 -2.1

Or see this region's nucleotide sequence