Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0121

Experiment: library passed through aphids in food, 72 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0120 and Psyr_0121 are separated by 81 nucleotidesPsyr_0121 and Psyr_0122 are separated by 89 nucleotides Psyr_0120: Psyr_0120 - Short-chain dehydrogenase/reductase SDR, at 130,166 to 130,936 _0120 Psyr_0121: Psyr_0121 - transcriptional regulator, TetR family, at 131,018 to 131,647 _0121 Psyr_0122: Psyr_0122 - NAD(P)H dehydrogenase (quinone), at 131,737 to 132,393 _0122 Position (kb) 131 132Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 130.058 kb on + strandat 130.059 kb on - strandat 130.110 kb on + strandat 130.110 kb on + strandat 130.111 kb on - strandat 130.111 kb on - strandat 130.111 kb on - strandat 130.111 kb on - strandat 130.111 kb on - strandat 130.165 kb on + strandat 130.166 kb on - strandat 130.228 kb on + strandat 130.229 kb on - strandat 130.451 kb on - strand, within Psyr_0120at 130.455 kb on + strand, within Psyr_0120at 130.455 kb on + strand, within Psyr_0120at 130.456 kb on - strand, within Psyr_0120at 130.456 kb on - strand, within Psyr_0120at 130.456 kb on - strand, within Psyr_0120at 130.456 kb on - strand, within Psyr_0120at 130.459 kb on + strand, within Psyr_0120at 130.459 kb on + strand, within Psyr_0120at 130.460 kb on - strand, within Psyr_0120at 130.460 kb on - strand, within Psyr_0120at 130.460 kb on - strand, within Psyr_0120at 130.460 kb on - strand, within Psyr_0120at 130.460 kb on - strand, within Psyr_0120at 130.460 kb on - strand, within Psyr_0120at 130.575 kb on + strand, within Psyr_0120at 130.575 kb on + strand, within Psyr_0120at 130.575 kb on + strand, within Psyr_0120at 130.575 kb on + strand, within Psyr_0120at 130.575 kb on + strand, within Psyr_0120at 130.576 kb on - strand, within Psyr_0120at 130.576 kb on - strand, within Psyr_0120at 130.670 kb on + strand, within Psyr_0120at 130.670 kb on + strand, within Psyr_0120at 130.670 kb on + strand, within Psyr_0120at 130.670 kb on + strand, within Psyr_0120at 130.671 kb on - strand, within Psyr_0120at 130.747 kb on + strand, within Psyr_0120at 130.748 kb on - strand, within Psyr_0120at 130.748 kb on - strand, within Psyr_0120at 130.748 kb on - strand, within Psyr_0120at 130.761 kb on + strand, within Psyr_0120at 130.761 kb on + strand, within Psyr_0120at 130.762 kb on - strand, within Psyr_0120at 130.762 kb on - strand, within Psyr_0120at 130.762 kb on - strand, within Psyr_0120at 130.762 kb on - strand, within Psyr_0120at 130.762 kb on - strand, within Psyr_0120at 130.762 kb on - strand, within Psyr_0120at 130.762 kb on - strand, within Psyr_0120at 130.762 kb on - strand, within Psyr_0120at 130.762 kb on - strand, within Psyr_0120at 130.762 kb on - strand, within Psyr_0120at 130.869 kb on + strandat 130.869 kb on + strandat 130.870 kb on - strandat 130.967 kb on + strandat 130.967 kb on + strandat 130.968 kb on - strandat 130.968 kb on - strandat 130.968 kb on - strandat 130.968 kb on - strandat 131.147 kb on + strand, within Psyr_0121at 131.147 kb on + strand, within Psyr_0121at 131.147 kb on + strand, within Psyr_0121at 131.147 kb on + strand, within Psyr_0121at 131.148 kb on - strand, within Psyr_0121at 131.148 kb on - strand, within Psyr_0121at 131.148 kb on - strand, within Psyr_0121at 131.148 kb on - strand, within Psyr_0121at 131.148 kb on - strand, within Psyr_0121at 131.148 kb on - strand, within Psyr_0121at 131.148 kb on - strand, within Psyr_0121at 131.221 kb on + strand, within Psyr_0121at 131.230 kb on + strand, within Psyr_0121at 131.287 kb on + strand, within Psyr_0121at 131.297 kb on + strand, within Psyr_0121at 131.298 kb on - strand, within Psyr_0121at 131.319 kb on - strand, within Psyr_0121at 131.331 kb on + strand, within Psyr_0121at 131.331 kb on + strand, within Psyr_0121at 131.331 kb on + strand, within Psyr_0121at 131.331 kb on + strand, within Psyr_0121at 131.331 kb on + strand, within Psyr_0121at 131.331 kb on + strand, within Psyr_0121at 131.331 kb on + strand, within Psyr_0121at 131.331 kb on + strand, within Psyr_0121at 131.331 kb on + strand, within Psyr_0121at 131.331 kb on + strand, within Psyr_0121at 131.331 kb on + strand, within Psyr_0121at 131.332 kb on - strand, within Psyr_0121at 131.332 kb on - strand, within Psyr_0121at 131.332 kb on - strand, within Psyr_0121at 131.332 kb on - strand, within Psyr_0121at 131.332 kb on - strand, within Psyr_0121at 131.332 kb on - strand, within Psyr_0121at 131.332 kb on - strand, within Psyr_0121at 131.332 kb on - strand, within Psyr_0121at 131.343 kb on - strand, within Psyr_0121at 131.343 kb on - strand, within Psyr_0121at 131.430 kb on + strand, within Psyr_0121at 131.431 kb on - strand, within Psyr_0121at 131.431 kb on - strand, within Psyr_0121at 131.431 kb on - strand, within Psyr_0121at 131.459 kb on - strand, within Psyr_0121at 131.635 kb on + strandat 131.651 kb on + strandat 131.652 kb on - strandat 131.652 kb on - strandat 131.655 kb on + strandat 131.656 kb on - strandat 131.661 kb on + strandat 131.665 kb on - strandat 131.691 kb on + strandat 131.694 kb on - strandat 131.735 kb on + strandat 131.736 kb on - strandat 131.814 kb on + strand, within Psyr_0122at 131.815 kb on - strand, within Psyr_0122at 131.819 kb on + strand, within Psyr_0122at 131.819 kb on + strand, within Psyr_0122at 131.819 kb on + strand, within Psyr_0122at 131.819 kb on + strand, within Psyr_0122at 131.819 kb on + strand, within Psyr_0122at 131.819 kb on + strand, within Psyr_0122at 131.820 kb on - strand, within Psyr_0122at 131.820 kb on - strand, within Psyr_0122at 131.820 kb on - strand, within Psyr_0122at 131.822 kb on + strand, within Psyr_0122at 131.822 kb on + strand, within Psyr_0122at 131.822 kb on + strand, within Psyr_0122at 131.822 kb on + strand, within Psyr_0122at 131.822 kb on + strand, within Psyr_0122at 131.822 kb on + strand, within Psyr_0122at 131.823 kb on - strand, within Psyr_0122at 131.823 kb on - strand, within Psyr_0122at 131.823 kb on - strand, within Psyr_0122at 131.823 kb on - strand, within Psyr_0122at 131.844 kb on - strand, within Psyr_0122at 131.906 kb on + strand, within Psyr_0122at 131.906 kb on + strand, within Psyr_0122at 131.906 kb on + strand, within Psyr_0122at 131.906 kb on + strand, within Psyr_0122at 131.906 kb on + strand, within Psyr_0122at 131.906 kb on + strand, within Psyr_0122at 131.906 kb on + strand, within Psyr_0122at 131.906 kb on + strand, within Psyr_0122at 131.906 kb on + strand, within Psyr_0122at 131.906 kb on + strand, within Psyr_0122at 131.907 kb on - strand, within Psyr_0122at 131.907 kb on - strand, within Psyr_0122at 131.907 kb on - strand, within Psyr_0122at 131.907 kb on - strand, within Psyr_0122at 131.907 kb on - strand, within Psyr_0122at 131.907 kb on - strand, within Psyr_0122at 131.907 kb on - strand, within Psyr_0122at 131.907 kb on - strand, within Psyr_0122at 131.907 kb on - strand, within Psyr_0122at 131.907 kb on - strand, within Psyr_0122at 131.960 kb on + strand, within Psyr_0122at 131.960 kb on + strand, within Psyr_0122at 131.961 kb on - strand, within Psyr_0122at 131.961 kb on - strand, within Psyr_0122at 131.961 kb on - strand, within Psyr_0122at 131.990 kb on - strand, within Psyr_0122at 131.998 kb on + strand, within Psyr_0122at 131.998 kb on + strand, within Psyr_0122at 132.090 kb on + strand, within Psyr_0122at 132.090 kb on + strand, within Psyr_0122at 132.091 kb on - strand, within Psyr_0122at 132.116 kb on + strand, within Psyr_0122at 132.116 kb on + strand, within Psyr_0122at 132.116 kb on + strand, within Psyr_0122at 132.116 kb on + strand, within Psyr_0122at 132.117 kb on - strand, within Psyr_0122at 132.117 kb on - strand, within Psyr_0122at 132.117 kb on - strand, within Psyr_0122at 132.131 kb on + strand, within Psyr_0122at 132.131 kb on + strand, within Psyr_0122at 132.132 kb on - strand, within Psyr_0122at 132.132 kb on - strand, within Psyr_0122at 132.154 kb on + strand, within Psyr_0122at 132.154 kb on + strand, within Psyr_0122at 132.154 kb on + strand, within Psyr_0122at 132.155 kb on - strand, within Psyr_0122at 132.155 kb on - strand, within Psyr_0122at 132.155 kb on - strand, within Psyr_0122at 132.155 kb on - strand, within Psyr_0122at 132.180 kb on + strand, within Psyr_0122at 132.181 kb on - strand, within Psyr_0122at 132.204 kb on + strand, within Psyr_0122at 132.204 kb on + strand, within Psyr_0122at 132.205 kb on - strand, within Psyr_0122at 132.205 kb on - strand, within Psyr_0122at 132.205 kb on - strand, within Psyr_0122at 132.205 kb on - strand, within Psyr_0122at 132.214 kb on + strand, within Psyr_0122at 132.234 kb on + strand, within Psyr_0122at 132.234 kb on + strand, within Psyr_0122at 132.234 kb on + strand, within Psyr_0122at 132.234 kb on + strand, within Psyr_0122at 132.234 kb on + strand, within Psyr_0122at 132.235 kb on - strand, within Psyr_0122at 132.235 kb on - strand, within Psyr_0122at 132.235 kb on - strand, within Psyr_0122at 132.235 kb on - strand, within Psyr_0122at 132.245 kb on + strand, within Psyr_0122at 132.246 kb on - strand, within Psyr_0122at 132.246 kb on - strand, within Psyr_0122at 132.312 kb on + strand, within Psyr_0122at 132.313 kb on - strand, within Psyr_0122at 132.345 kb on + strandat 132.359 kb on - strandat 132.359 kb on - strandat 132.391 kb on + strandat 132.391 kb on + strandat 132.392 kb on - strandat 132.392 kb on - strandat 132.392 kb on - strandat 132.397 kb on + strandat 132.397 kb on + strandat 132.433 kb on - strandat 132.457 kb on + strandat 132.458 kb on - strandat 132.458 kb on - strandat 132.458 kb on - strandat 132.478 kb on - strandat 132.478 kb on - strandat 132.578 kb on + strandat 132.589 kb on + strandat 132.590 kb on - strandat 132.590 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction library passed through aphids in food, 72 hours
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130,058 + -0.3
130,059 - +0.4
130,110 + +0.8
130,110 + +0.4
130,111 - -1.1
130,111 - -0.7
130,111 - -0.9
130,111 - +1.9
130,111 - -1.0
130,165 + -0.0
130,166 - +0.9
130,228 + -0.8
130,229 - +1.0
130,451 - Psyr_0120 0.37 -0.2
130,455 + Psyr_0120 0.37 -0.2
130,455 + Psyr_0120 0.37 -1.1
130,456 - Psyr_0120 0.38 -1.2
130,456 - Psyr_0120 0.38 +0.4
130,456 - Psyr_0120 0.38 -0.8
130,456 - Psyr_0120 0.38 +0.1
130,459 + Psyr_0120 0.38 -0.4
130,459 + Psyr_0120 0.38 +1.0
130,460 - Psyr_0120 0.38 +1.8
130,460 - Psyr_0120 0.38 -1.8
130,460 - Psyr_0120 0.38 +0.2
130,460 - Psyr_0120 0.38 -0.7
130,460 - Psyr_0120 0.38 +0.5
130,460 - Psyr_0120 0.38 -0.1
130,575 + Psyr_0120 0.53 -0.8
130,575 + Psyr_0120 0.53 -0.2
130,575 + Psyr_0120 0.53 -0.1
130,575 + Psyr_0120 0.53 +0.0
130,575 + Psyr_0120 0.53 +1.2
130,576 - Psyr_0120 0.53 +1.0
130,576 - Psyr_0120 0.53 -1.5
130,670 + Psyr_0120 0.65 +0.2
130,670 + Psyr_0120 0.65 -1.4
130,670 + Psyr_0120 0.65 -0.3
130,670 + Psyr_0120 0.65 +1.9
130,671 - Psyr_0120 0.65 -0.7
130,747 + Psyr_0120 0.75 +2.3
130,748 - Psyr_0120 0.75 -0.7
130,748 - Psyr_0120 0.75 +0.1
130,748 - Psyr_0120 0.75 +0.9
130,761 + Psyr_0120 0.77 +0.1
130,761 + Psyr_0120 0.77 +1.0
130,762 - Psyr_0120 0.77 +0.6
130,762 - Psyr_0120 0.77 +0.6
130,762 - Psyr_0120 0.77 +0.2
130,762 - Psyr_0120 0.77 -0.7
130,762 - Psyr_0120 0.77 +0.3
130,762 - Psyr_0120 0.77 -0.2
130,762 - Psyr_0120 0.77 -2.8
130,762 - Psyr_0120 0.77 +1.1
130,762 - Psyr_0120 0.77 -0.0
130,762 - Psyr_0120 0.77 +0.5
130,869 + +0.5
130,869 + +0.1
130,870 - +1.0
130,967 + +0.5
130,967 + +0.3
130,968 - -0.9
130,968 - +1.3
130,968 - +3.0
130,968 - -0.6
131,147 + Psyr_0121 0.20 +0.1
131,147 + Psyr_0121 0.20 -2.5
131,147 + Psyr_0121 0.20 -2.1
131,147 + Psyr_0121 0.20 -1.4
131,148 - Psyr_0121 0.21 -0.2
131,148 - Psyr_0121 0.21 +1.3
131,148 - Psyr_0121 0.21 +0.7
131,148 - Psyr_0121 0.21 -1.5
131,148 - Psyr_0121 0.21 +1.1
131,148 - Psyr_0121 0.21 +0.4
131,148 - Psyr_0121 0.21 +0.2
131,221 + Psyr_0121 0.32 -1.4
131,230 + Psyr_0121 0.34 +0.3
131,287 + Psyr_0121 0.43 +0.2
131,297 + Psyr_0121 0.44 -0.6
131,298 - Psyr_0121 0.44 -0.9
131,319 - Psyr_0121 0.48 -0.5
131,331 + Psyr_0121 0.50 -0.5
131,331 + Psyr_0121 0.50 +0.1
131,331 + Psyr_0121 0.50 -0.4
131,331 + Psyr_0121 0.50 +1.1
131,331 + Psyr_0121 0.50 -1.1
131,331 + Psyr_0121 0.50 -2.4
131,331 + Psyr_0121 0.50 +0.1
131,331 + Psyr_0121 0.50 -1.8
131,331 + Psyr_0121 0.50 -1.7
131,331 + Psyr_0121 0.50 -0.6
131,331 + Psyr_0121 0.50 -0.6
131,332 - Psyr_0121 0.50 +0.3
131,332 - Psyr_0121 0.50 +0.0
131,332 - Psyr_0121 0.50 -0.3
131,332 - Psyr_0121 0.50 -0.7
131,332 - Psyr_0121 0.50 -0.4
131,332 - Psyr_0121 0.50 -2.4
131,332 - Psyr_0121 0.50 +1.7
131,332 - Psyr_0121 0.50 -0.6
131,343 - Psyr_0121 0.52 +1.2
131,343 - Psyr_0121 0.52 -1.0
131,430 + Psyr_0121 0.65 +1.5
131,431 - Psyr_0121 0.66 -0.5
131,431 - Psyr_0121 0.66 -0.6
131,431 - Psyr_0121 0.66 -2.1
131,459 - Psyr_0121 0.70 +0.7
131,635 + -0.4
131,651 + +2.2
131,652 - +1.7
131,652 - +0.1
131,655 + -1.5
131,656 - -2.4
131,661 + -2.0
131,665 - +1.2
131,691 + +0.6
131,694 - +0.1
131,735 + -1.4
131,736 - -1.7
131,814 + Psyr_0122 0.12 +1.5
131,815 - Psyr_0122 0.12 +1.8
131,819 + Psyr_0122 0.12 -0.7
131,819 + Psyr_0122 0.12 -1.8
131,819 + Psyr_0122 0.12 -0.9
131,819 + Psyr_0122 0.12 -1.0
131,819 + Psyr_0122 0.12 -0.9
131,819 + Psyr_0122 0.12 -1.7
131,820 - Psyr_0122 0.13 -0.8
131,820 - Psyr_0122 0.13 +0.7
131,820 - Psyr_0122 0.13 +0.7
131,822 + Psyr_0122 0.13 -0.4
131,822 + Psyr_0122 0.13 +1.0
131,822 + Psyr_0122 0.13 +0.0
131,822 + Psyr_0122 0.13 -1.9
131,822 + Psyr_0122 0.13 +0.7
131,822 + Psyr_0122 0.13 +0.2
131,823 - Psyr_0122 0.13 +0.2
131,823 - Psyr_0122 0.13 +1.0
131,823 - Psyr_0122 0.13 -0.8
131,823 - Psyr_0122 0.13 -1.8
131,844 - Psyr_0122 0.16 -0.6
131,906 + Psyr_0122 0.26 +0.1
131,906 + Psyr_0122 0.26 -0.8
131,906 + Psyr_0122 0.26 -0.1
131,906 + Psyr_0122 0.26 -0.5
131,906 + Psyr_0122 0.26 +0.7
131,906 + Psyr_0122 0.26 +0.3
131,906 + Psyr_0122 0.26 +1.2
131,906 + Psyr_0122 0.26 -2.3
131,906 + Psyr_0122 0.26 -0.1
131,906 + Psyr_0122 0.26 -0.2
131,907 - Psyr_0122 0.26 +0.5
131,907 - Psyr_0122 0.26 +0.1
131,907 - Psyr_0122 0.26 +0.9
131,907 - Psyr_0122 0.26 -1.1
131,907 - Psyr_0122 0.26 +1.6
131,907 - Psyr_0122 0.26 +0.6
131,907 - Psyr_0122 0.26 +1.6
131,907 - Psyr_0122 0.26 +0.8
131,907 - Psyr_0122 0.26 +0.9
131,907 - Psyr_0122 0.26 -0.1
131,960 + Psyr_0122 0.34 -1.2
131,960 + Psyr_0122 0.34 -1.2
131,961 - Psyr_0122 0.34 +0.4
131,961 - Psyr_0122 0.34 -0.9
131,961 - Psyr_0122 0.34 +2.1
131,990 - Psyr_0122 0.39 -0.0
131,998 + Psyr_0122 0.40 -0.8
131,998 + Psyr_0122 0.40 -1.4
132,090 + Psyr_0122 0.54 +2.8
132,090 + Psyr_0122 0.54 +1.7
132,091 - Psyr_0122 0.54 +1.0
132,116 + Psyr_0122 0.58 +0.6
132,116 + Psyr_0122 0.58 -0.9
132,116 + Psyr_0122 0.58 -1.4
132,116 + Psyr_0122 0.58 +0.3
132,117 - Psyr_0122 0.58 -0.1
132,117 - Psyr_0122 0.58 -0.1
132,117 - Psyr_0122 0.58 +0.2
132,131 + Psyr_0122 0.60 -1.2
132,131 + Psyr_0122 0.60 +1.7
132,132 - Psyr_0122 0.60 +1.4
132,132 - Psyr_0122 0.60 -0.2
132,154 + Psyr_0122 0.63 +0.8
132,154 + Psyr_0122 0.63 +1.1
132,154 + Psyr_0122 0.63 +1.1
132,155 - Psyr_0122 0.64 +1.2
132,155 - Psyr_0122 0.64 -1.5
132,155 - Psyr_0122 0.64 +0.8
132,155 - Psyr_0122 0.64 +1.3
132,180 + Psyr_0122 0.67 -0.7
132,181 - Psyr_0122 0.68 +0.8
132,204 + Psyr_0122 0.71 -0.1
132,204 + Psyr_0122 0.71 +0.5
132,205 - Psyr_0122 0.71 -0.3
132,205 - Psyr_0122 0.71 -0.6
132,205 - Psyr_0122 0.71 +0.2
132,205 - Psyr_0122 0.71 -0.2
132,214 + Psyr_0122 0.73 -0.9
132,234 + Psyr_0122 0.76 -0.0
132,234 + Psyr_0122 0.76 +0.0
132,234 + Psyr_0122 0.76 -0.7
132,234 + Psyr_0122 0.76 -1.4
132,234 + Psyr_0122 0.76 +0.9
132,235 - Psyr_0122 0.76 +0.4
132,235 - Psyr_0122 0.76 -0.5
132,235 - Psyr_0122 0.76 -0.7
132,235 - Psyr_0122 0.76 -3.6
132,245 + Psyr_0122 0.77 +0.1
132,246 - Psyr_0122 0.77 -1.5
132,246 - Psyr_0122 0.77 -2.1
132,312 + Psyr_0122 0.88 -0.1
132,313 - Psyr_0122 0.88 +0.3
132,345 + -0.2
132,359 - -0.1
132,359 - -0.7
132,391 + +0.3
132,391 + +0.2
132,392 - +1.0
132,392 - +0.4
132,392 - -0.1
132,397 + -0.6
132,397 + +0.2
132,433 - +1.9
132,457 + -1.1
132,458 - -0.5
132,458 - -0.8
132,458 - -0.3
132,478 - -0.4
132,478 - +0.8
132,578 + +1.7
132,589 + +1.4
132,590 - -0.2
132,590 - -0.5

Or see this region's nucleotide sequence