Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0101

Experiment: library passed through aphids in food, 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	library passed through aphids in food, 72 hours
111,997	-				+0.7
111,997	-				-0.7
112,021	-				+0.1
112,115	+				-0.8
112,147	-				+0.4
112,173	+				-1.2
112,173	+				+2.8
112,173	+				-1.1
112,522	+		Psyr_0100	0.16	-0.1
112,522	+		Psyr_0100	0.16	-0.3
112,522	+		Psyr_0100	0.16	-0.1
112,523	-		Psyr_0100	0.16	-1.4
112,527	-		Psyr_0100	0.17	+0.2
112,527	-		Psyr_0100	0.17	+0.4
112,531	-		Psyr_0100	0.18	+0.6
112,711	+		Psyr_0100	0.52	+1.3
112,711	+		Psyr_0100	0.52	+0.1
112,712	-		Psyr_0100	0.52	-3.4
112,720	+		Psyr_0100	0.53	-1.2
112,770	+		Psyr_0100	0.63	+0.9
112,770	+		Psyr_0100	0.63	-1.1
112,770	+		Psyr_0100	0.63	+0.3
112,772	+		Psyr_0100	0.63	-1.3
112,772	+		Psyr_0100	0.63	-0.5
112,772	+		Psyr_0100	0.63	+0.2
112,772	+		Psyr_0100	0.63	+0.4
112,772	+		Psyr_0100	0.63	-1.4
112,772	+		Psyr_0100	0.63	-0.7
112,772	+		Psyr_0100	0.63	+2.2
112,772	+		Psyr_0100	0.63	-1.5
112,773	-		Psyr_0100	0.63	-1.1
112,773	-		Psyr_0100	0.63	+0.7
112,773	-		Psyr_0100	0.63	+1.1
112,773	-		Psyr_0100	0.63	+0.2
112,773	-		Psyr_0100	0.63	+0.0
112,862	+		Psyr_0100	0.80	+0.1
112,875	+		Psyr_0100	0.82	+0.6
112,931	-				+0.7
112,968	+				-1.0
112,968	+				-0.4
112,968	+				-0.1
112,968	+				+0.1
112,968	+				+0.4
112,968	+				-0.4
112,968	+				-2.4
112,968	+				-0.4
112,968	+				-0.4
112,968	+				+1.5
112,968	+				+0.4
112,968	+				+1.8
112,968	+				+0.3
112,969	-				-0.2
112,969	-				+0.5
112,969	-				+0.6
112,969	-				+0.2
112,969	-				-0.5
112,969	-				+0.3
112,969	-				-1.1
112,969	-				-2.2
112,969	-				-1.4
112,969	-				+0.0
112,994	+				+1.1
112,994	+				-2.2
112,995	-				+1.1
112,996	+				-2.8
112,996	+				+0.2
112,996	+				-2.0
112,997	-				-0.3
112,997	-				-0.8
113,070	+		Psyr_0101	0.17	-1.1
113,070	+		Psyr_0101	0.17	-0.8
113,071	-		Psyr_0101	0.17	-1.7
113,071	-		Psyr_0101	0.17	+0.1
113,072	+		Psyr_0101	0.17	-0.1
113,072	+		Psyr_0101	0.17	-1.0
113,072	+		Psyr_0101	0.17	-0.1
113,072	+		Psyr_0101	0.17	-0.3
113,072	+		Psyr_0101	0.17	+0.0
113,072	+		Psyr_0101	0.17	-1.1
113,072	+		Psyr_0101	0.17	-1.8
113,073	-		Psyr_0101	0.17	+0.2
113,073	-		Psyr_0101	0.17	+0.0
113,073	-		Psyr_0101	0.17	-0.4
113,073	-		Psyr_0101	0.17	-0.4
113,073	-		Psyr_0101	0.17	+1.4
113,073	-		Psyr_0101	0.17	-1.4
113,073	-		Psyr_0101	0.17	+0.3
113,073	-		Psyr_0101	0.17	-1.2
113,093	+		Psyr_0101	0.21	+0.3
113,093	+		Psyr_0101	0.21	-1.3
113,094	-		Psyr_0101	0.21	+0.9
113,131	+		Psyr_0101	0.29	-0.1
113,131	+		Psyr_0101	0.29	-0.3
113,131	+		Psyr_0101	0.29	-1.1
113,131	+		Psyr_0101	0.29	+0.0
113,132	-		Psyr_0101	0.29	+0.1
113,166	+		Psyr_0101	0.36	-2.0
113,166	+		Psyr_0101	0.36	-0.2
113,185	+		Psyr_0101	0.40	-0.2
113,185	+		Psyr_0101	0.40	+0.1
113,186	-		Psyr_0101	0.40	+0.1
113,186	-		Psyr_0101	0.40	-1.1
113,196	-		Psyr_0101	0.42	-0.3
113,325	+		Psyr_0101	0.67	-1.3
113,326	-				+0.0
113,392	+		Psyr_0101	0.81	-0.4
113,392	+		Psyr_0101	0.81	-0.3
113,472	-				+0.6
113,472	-				+0.5
113,472	-				+1.3
113,493	+				-2.5
113,516	-				+0.3
113,523	-				+0.8
113,534	+				-0.3
113,534	+				-0.7
113,535	-				+0.3
113,535	-				+0.1
113,535	-				-0.1
113,654	-				-0.6
113,735	+				-0.5
113,736	-				-0.7
113,737	+				+0.6
113,737	+				-1.8
113,737	+				-0.2
113,737	+				+0.5
113,737	+				-0.1
113,737	+				-1.3
113,737	+				-1.9
113,737	+				+0.5
113,738	-				+1.0
113,738	-				+1.3
113,738	-				-0.5
113,751	+				+2.4
113,751	+				-0.7
113,755	+				-0.9
113,755	+				+0.3
113,755	+				+1.5
113,755	+				+0.2
113,755	+				-2.7
113,755	+				+0.1
113,755	+				+0.5
113,755	+				-2.5
113,755	+				+1.0
113,755	+				+0.7
113,755	+				+0.0
113,755	+				+0.8
113,755	+				-1.1
113,755	+				+0.5
113,755	+				+0.8
113,756	-				+5.1
113,756	-				+0.1
113,756	-				+0.7
113,756	-				+1.5
113,756	-				+1.7
113,756	-				-0.5
113,756	-				-0.4
113,756	-				+0.2
113,756	-				-0.5
113,756	-				+0.5
113,756	-				+0.2
113,793	+				-1.0
113,793	+				-0.6
113,793	+				+0.6
113,794	-				-1.1
113,804	-				-1.2
113,875	+				+1.3
113,875	+				+0.2
113,876	-				+1.5
113,876	-				+1.1
113,876	-				-0.4
113,876	-				-1.0
113,876	-				-2.0
113,876	-				+1.7
113,963	+				+1.5
113,964	-				+0.9
114,021	+		Psyr_0102	0.19	-0.7
114,021	+		Psyr_0102	0.19	+1.3
114,021	+		Psyr_0102	0.19	+0.5
114,021	+		Psyr_0102	0.19	+0.7
114,021	+		Psyr_0102	0.19	+1.7
114,021	+		Psyr_0102	0.19	-0.5
114,021	+		Psyr_0102	0.19	+1.9
114,022	-		Psyr_0102	0.19	+0.4
114,022	-		Psyr_0102	0.19	+1.7
114,022	-		Psyr_0102	0.19	-0.0
114,022	-		Psyr_0102	0.19	+0.1
114,022	-		Psyr_0102	0.19	+0.6
114,022	-		Psyr_0102	0.19	-2.0
114,024	+		Psyr_0102	0.20	-1.5
114,025	-		Psyr_0102	0.20	+0.2
114,025	-		Psyr_0102	0.20	-0.6
114,028	+		Psyr_0102	0.20	+0.1
114,028	+		Psyr_0102	0.20	+1.7
114,029	-		Psyr_0102	0.21	+0.3
114,029	-		Psyr_0102	0.21	-0.6
114,029	-		Psyr_0102	0.21	+0.6
114,086	+		Psyr_0102	0.30	-1.8
114,086	+		Psyr_0102	0.30	-1.9
114,087	-		Psyr_0102	0.30	+2.5
114,119	-		Psyr_0102	0.36	+1.9
114,144	+		Psyr_0102	0.40	-0.8
114,165	-		Psyr_0102	0.43	-1.6
114,224	+		Psyr_0102	0.53	-1.4
114,224	+		Psyr_0102	0.53	+0.0
114,224	+		Psyr_0102	0.53	+0.1
114,225	-		Psyr_0102	0.53	-0.5
114,225	-		Psyr_0102	0.53	-0.4
114,227	+		Psyr_0102	0.54	+0.6
114,228	-		Psyr_0102	0.54	+1.9
114,228	-		Psyr_0102	0.54	-2.6
114,246	-		Psyr_0102	0.57	-0.0
114,269	+		Psyr_0102	0.61	+1.5
114,269	+		Psyr_0102	0.61	-2.6
114,270	-		Psyr_0102	0.61	+1.0
114,311	+		Psyr_0102	0.68	+0.6
114,311	+		Psyr_0102	0.68	-0.5
114,311	+		Psyr_0102	0.68	+0.2
114,360	+		Psyr_0102	0.76	-0.5
114,360	+		Psyr_0102	0.76	+0.4
114,360	+		Psyr_0102	0.76	+1.4
114,360	+		Psyr_0102	0.76	+0.8
114,360	+		Psyr_0102	0.76	+0.7
114,360	+		Psyr_0102	0.76	-0.2
114,360	+		Psyr_0102	0.76	+1.1
114,360	+		Psyr_0102	0.76	+0.8
114,361	-		Psyr_0102	0.76	-0.4
114,361	-		Psyr_0102	0.76	+2.5
114,361	-		Psyr_0102	0.76	-0.3
114,361	-		Psyr_0102	0.76	+2.1
114,390	-		Psyr_0102	0.81	+0.5
114,396	-		Psyr_0102	0.82	+0.6
114,409	+		Psyr_0102	0.84	-1.9
114,410	-		Psyr_0102	0.84	+1.0
114,413	+		Psyr_0102	0.85	+2.5
114,413	+		Psyr_0102	0.85	+0.9
114,414	-		Psyr_0102	0.85	-0.8
114,414	-		Psyr_0102	0.85	+0.5