Experiment: D-Trehalose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5136 and Pf6N2E2_5137 are separated by 117 nucleotides Pf6N2E2_5137 and Pf6N2E2_5138 are separated by 202 nucleotides Pf6N2E2_5138 and Pf6N2E2_5139 overlap by 4 nucleotides
Pf6N2E2_5136 - FIG028593: membrane protein, at 5,921,413 to 5,922,099
_5136
Pf6N2E2_5137 - FIG00956650: hypothetical protein, at 5,922,217 to 5,922,378
_5137
Pf6N2E2_5138 - FIG003276: zinc-binding protein, at 5,922,581 to 5,922,781
_5138
Pf6N2E2_5139 - Dephospho-CoA kinase (EC 2.7.1.24), at 5,922,778 to 5,923,389
_5139
Position (kb)
5922
5923 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 5921.256 kb on + strand at 5921.256 kb on + strand at 5921.256 kb on + strand at 5921.257 kb on - strand at 5921.406 kb on + strand at 5921.407 kb on - strand at 5921.407 kb on - strand at 5921.432 kb on + strand at 5921.467 kb on + strand at 5921.467 kb on + strand at 5921.467 kb on + strand at 5921.468 kb on - strand at 5921.468 kb on - strand at 5921.468 kb on - strand at 5921.471 kb on + strand at 5921.471 kb on + strand at 5921.471 kb on + strand at 5921.472 kb on - strand at 5921.472 kb on - strand at 5921.614 kb on + strand, within Pf6N2E2_5136 at 5921.760 kb on + strand, within Pf6N2E2_5136 at 5921.761 kb on - strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.830 kb on + strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.831 kb on - strand, within Pf6N2E2_5136 at 5921.832 kb on + strand, within Pf6N2E2_5136 at 5921.832 kb on + strand, within Pf6N2E2_5136 at 5921.832 kb on + strand, within Pf6N2E2_5136 at 5921.832 kb on + strand, within Pf6N2E2_5136 at 5921.832 kb on + strand, within Pf6N2E2_5136 at 5921.832 kb on + strand, within Pf6N2E2_5136 at 5921.832 kb on + strand, within Pf6N2E2_5136 at 5921.833 kb on - strand, within Pf6N2E2_5136 at 5921.833 kb on - strand, within Pf6N2E2_5136 at 5921.833 kb on - strand, within Pf6N2E2_5136 at 5921.908 kb on + strand, within Pf6N2E2_5136 at 5921.909 kb on - strand, within Pf6N2E2_5136 at 5921.917 kb on - strand, within Pf6N2E2_5136 at 5921.917 kb on - strand, within Pf6N2E2_5136 at 5921.917 kb on - strand, within Pf6N2E2_5136 at 5921.918 kb on + strand, within Pf6N2E2_5136 at 5921.918 kb on + strand, within Pf6N2E2_5136 at 5921.918 kb on + strand, within Pf6N2E2_5136 at 5921.918 kb on + strand, within Pf6N2E2_5136 at 5921.919 kb on - strand, within Pf6N2E2_5136 at 5921.919 kb on - strand, within Pf6N2E2_5136 at 5921.919 kb on - strand, within Pf6N2E2_5136 at 5921.919 kb on - strand, within Pf6N2E2_5136 at 5921.919 kb on - strand, within Pf6N2E2_5136 at 5921.933 kb on - strand, within Pf6N2E2_5136 at 5921.957 kb on - strand, within Pf6N2E2_5136 at 5921.997 kb on + strand, within Pf6N2E2_5136 at 5921.998 kb on - strand, within Pf6N2E2_5136 at 5922.061 kb on + strand at 5922.062 kb on - strand at 5922.173 kb on - strand at 5922.173 kb on - strand at 5922.173 kb on - strand at 5922.202 kb on - strand at 5922.358 kb on + strand, within Pf6N2E2_5137 at 5922.358 kb on + strand, within Pf6N2E2_5137 at 5922.358 kb on + strand, within Pf6N2E2_5137 at 5922.359 kb on - strand, within Pf6N2E2_5137 at 5922.359 kb on - strand, within Pf6N2E2_5137 at 5922.391 kb on + strand at 5922.429 kb on + strand at 5922.429 kb on + strand at 5922.801 kb on + strand at 5922.801 kb on + strand at 5922.802 kb on - strand at 5922.802 kb on - strand at 5922.802 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose (C) remove 5,921,256 + -0.6 5,921,256 + -2.1 5,921,256 + +0.4 5,921,257 - -1.9 5,921,406 + -0.9 5,921,407 - +1.1 5,921,407 - -0.0 5,921,432 + -1.7 5,921,467 + +0.6 5,921,467 + -2.0 5,921,467 + -0.4 5,921,468 - +1.8 5,921,468 - -0.3 5,921,468 - +0.8 5,921,471 + -1.3 5,921,471 + +0.5 5,921,471 + -1.9 5,921,472 - -0.7 5,921,472 - +0.0 5,921,614 + Pf6N2E2_5136 0.29 -0.0 5,921,760 + Pf6N2E2_5136 0.51 -1.0 5,921,761 - Pf6N2E2_5136 0.51 +0.6 5,921,830 + Pf6N2E2_5136 0.61 +0.1 5,921,830 + Pf6N2E2_5136 0.61 +1.7 5,921,830 + Pf6N2E2_5136 0.61 +1.3 5,921,830 + Pf6N2E2_5136 0.61 +1.6 5,921,830 + Pf6N2E2_5136 0.61 -0.1 5,921,830 + Pf6N2E2_5136 0.61 +0.7 5,921,830 + Pf6N2E2_5136 0.61 +0.6 5,921,830 + Pf6N2E2_5136 0.61 -1.2 5,921,830 + Pf6N2E2_5136 0.61 +0.5 5,921,830 + Pf6N2E2_5136 0.61 -1.7 5,921,831 - Pf6N2E2_5136 0.61 -0.9 5,921,831 - Pf6N2E2_5136 0.61 -1.9 5,921,831 - Pf6N2E2_5136 0.61 +0.3 5,921,831 - Pf6N2E2_5136 0.61 +2.3 5,921,831 - Pf6N2E2_5136 0.61 -0.1 5,921,831 - Pf6N2E2_5136 0.61 +0.1 5,921,831 - Pf6N2E2_5136 0.61 +0.2 5,921,831 - Pf6N2E2_5136 0.61 -1.2 5,921,831 - Pf6N2E2_5136 0.61 -0.3 5,921,831 - Pf6N2E2_5136 0.61 +0.0 5,921,831 - Pf6N2E2_5136 0.61 +1.6 5,921,831 - Pf6N2E2_5136 0.61 -0.5 5,921,832 + Pf6N2E2_5136 0.61 -3.0 5,921,832 + Pf6N2E2_5136 0.61 -0.3 5,921,832 + Pf6N2E2_5136 0.61 +0.8 5,921,832 + Pf6N2E2_5136 0.61 +1.2 5,921,832 + Pf6N2E2_5136 0.61 -0.6 5,921,832 + Pf6N2E2_5136 0.61 +0.6 5,921,832 + Pf6N2E2_5136 0.61 +1.2 5,921,833 - Pf6N2E2_5136 0.61 +0.3 5,921,833 - Pf6N2E2_5136 0.61 +0.5 5,921,833 - Pf6N2E2_5136 0.61 -0.0 5,921,908 + Pf6N2E2_5136 0.72 -2.1 5,921,909 - Pf6N2E2_5136 0.72 -1.0 5,921,917 - Pf6N2E2_5136 0.73 -2.6 5,921,917 - Pf6N2E2_5136 0.73 +0.4 5,921,917 - Pf6N2E2_5136 0.73 -0.8 5,921,918 + Pf6N2E2_5136 0.74 +0.5 5,921,918 + Pf6N2E2_5136 0.74 +0.3 5,921,918 + Pf6N2E2_5136 0.74 +0.3 5,921,918 + Pf6N2E2_5136 0.74 -2.0 5,921,919 - Pf6N2E2_5136 0.74 +0.4 5,921,919 - Pf6N2E2_5136 0.74 +0.4 5,921,919 - Pf6N2E2_5136 0.74 +0.5 5,921,919 - Pf6N2E2_5136 0.74 -0.5 5,921,919 - Pf6N2E2_5136 0.74 -0.2 5,921,933 - Pf6N2E2_5136 0.76 -0.9 5,921,957 - Pf6N2E2_5136 0.79 -0.3 5,921,997 + Pf6N2E2_5136 0.85 -2.3 5,921,998 - Pf6N2E2_5136 0.85 +0.7 5,922,061 + -0.7 5,922,062 - +1.2 5,922,173 - +1.5 5,922,173 - -1.1 5,922,173 - -1.0 5,922,202 - -0.2 5,922,358 + Pf6N2E2_5137 0.87 -0.7 5,922,358 + Pf6N2E2_5137 0.87 -2.6 5,922,358 + Pf6N2E2_5137 0.87 -1.3 5,922,359 - Pf6N2E2_5137 0.88 +2.1 5,922,359 - Pf6N2E2_5137 0.88 -1.7 5,922,391 + -0.4 5,922,429 + +0.7 5,922,429 + -1.4 5,922,801 + +1.1 5,922,801 + +1.8 5,922,802 - -2.4 5,922,802 - -0.5 5,922,802 - +3.2
Or see this region's nucleotide sequence