Strain Fitness in Marinobacter adhaerens HP15 around HP15_2116

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2113 and HP15_2114 are separated by 48 nucleotidesHP15_2114 and HP15_2115 are separated by 71 nucleotidesHP15_2115 and HP15_2116 are separated by 12 nucleotidesHP15_2116 and HP15_2117 are separated by 72 nucleotidesHP15_2117 and HP15_2118 are separated by 19 nucleotides HP15_2113: HP15_2113 - heavy-metal transporting P-type ATPase, at 2,211,965 to 2,214,412 _2113 HP15_2114: HP15_2114 - cytochrome oxidase maturation protein, cbb3-type, at 2,214,461 to 2,214,709 _2114 HP15_2115: HP15_2115 - conserved hypothetical protein, membrane, at 2,214,781 to 2,215,395 _2115 HP15_2116: HP15_2116 - PP-loop domain protein, at 2,215,408 to 2,216,322 _2116 HP15_2117: HP15_2117 - transcriptional regulator, TetR family protein, at 2,216,395 to 2,217,039 _2117 HP15_2118: HP15_2118 - heat shock protein DnaJ domain protein, at 2,217,059 to 2,217,733 _2118 Position (kb) 2215 2216 2217Strain fitness (log2 ratio) -1 0 1at 2215.480 kb on - strandat 2215.492 kb on + strandat 2215.846 kb on - strand, within HP15_2116at 2215.871 kb on - strand, within HP15_2116at 2216.111 kb on - strand, within HP15_2116at 2216.116 kb on - strand, within HP15_2116at 2216.672 kb on - strand, within HP15_2117at 2216.810 kb on - strand, within HP15_2117at 2216.915 kb on + strand, within HP15_2117at 2217.000 kb on + strandat 2217.000 kb on + strandat 2217.056 kb on + strandat 2217.064 kb on - strandat 2217.064 kb on - strandat 2217.167 kb on - strand, within HP15_2118at 2217.214 kb on + strand, within HP15_2118

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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2,215,480 - +0.1
2,215,492 + +0.2
2,215,846 - HP15_2116 0.48 +0.1
2,215,871 - HP15_2116 0.51 +0.1
2,216,111 - HP15_2116 0.77 +0.4
2,216,116 - HP15_2116 0.77 -0.3
2,216,672 - HP15_2117 0.43 -0.0
2,216,810 - HP15_2117 0.64 +0.1
2,216,915 + HP15_2117 0.81 -0.2
2,217,000 + -1.3
2,217,000 + +1.7
2,217,056 + +0.3
2,217,064 - -0.1
2,217,064 - -0.1
2,217,167 - HP15_2118 0.16 +0.6
2,217,214 + HP15_2118 0.23 +0.7

Or see this region's nucleotide sequence