Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11090 and BWI76_RS11095 are separated by 210 nucleotides BWI76_RS11095 and BWI76_RS11100 are separated by 89 nucleotides BWI76_RS11100 and BWI76_RS11105 are separated by 143 nucleotides BWI76_RS11105 and BWI76_RS11110 are separated by 2 nucleotides
BWI76_RS11090: BWI76_RS11090 - beta-ketoacyl-ACP reductase, at 2,339,336 to 2,340,070
_RS11090
BWI76_RS11095: BWI76_RS11095 - acyl carrier protein, at 2,340,281 to 2,340,517
_RS11095
BWI76_RS11100: BWI76_RS11100 - beta-ketoacyl-[acyl-carrier-protein] synthase II, at 2,340,607 to 2,341,848
_RS11100
BWI76_RS11105: BWI76_RS11105 - aminodeoxychorismate lyase, at 2,341,992 to 2,342,801
_RS11105
BWI76_RS11110: BWI76_RS11110 - cell division protein YceG, at 2,342,804 to 2,343,826
_RS11110
Position (kb)
2340
2341
2342 Strain fitness (log2 ratio)
-1
0
1 at 2341.302 kb on + strand, within BWI76_RS11100 at 2341.592 kb on + strand, within BWI76_RS11100 at 2341.637 kb on + strand, within BWI76_RS11100 at 2341.781 kb on + strand at 2341.842 kb on + strand at 2342.422 kb on - strand, within BWI76_RS11105 at 2342.551 kb on + strand, within BWI76_RS11105 at 2342.551 kb on + strand, within BWI76_RS11105
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 2,341,302 + BWI76_RS11100 0.56 -0.8 2,341,592 + BWI76_RS11100 0.79 -0.7 2,341,637 + BWI76_RS11100 0.83 -0.5 2,341,781 + -0.4 2,341,842 + +0.2 2,342,422 - BWI76_RS11105 0.53 -1.7 2,342,551 + BWI76_RS11105 0.69 -1.2 2,342,551 + BWI76_RS11105 0.69 -0.5
Or see this region's nucleotide sequence