Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00765 and BWI76_RS00770 are separated by 150 nucleotides BWI76_RS00770 and BWI76_RS00775 are separated by 241 nucleotides BWI76_RS00775 and BWI76_RS00780 are separated by 94 nucleotides
BWI76_RS00765: BWI76_RS00765 - DNA-binding transcriptional regulator CytR, at 155,303 to 156,331
_RS00765
BWI76_RS00770: BWI76_RS00770 - primosomal protein N', at 156,482 to 158,677
_RS00770
BWI76_RS00775: BWI76_RS00775 - 50S ribosomal protein L31, at 158,919 to 159,134
_RS00775
BWI76_RS00780: BWI76_RS00780 - met repressor, at 159,229 to 159,546
_RS00780
Position (kb) 156
157
158
159 Strain fitness (log2 ratio) -1
0
1 at 155.521 kb on + strand, within BWI76_RS00765 at 155.521 kb on + strand, within BWI76_RS00765 at 155.973 kb on - strand, within BWI76_RS00765 at 156.005 kb on + strand, within BWI76_RS00765 at 156.005 kb on + strand, within BWI76_RS00765 at 156.005 kb on + strand, within BWI76_RS00765 at 156.041 kb on + strand, within BWI76_RS00765 at 156.059 kb on + strand, within BWI76_RS00765 at 156.362 kb on + strand at 156.487 kb on - strand at 159.493 kb on + strand, within BWI76_RS00780 at 159.623 kb on - strand at 159.654 kb on + strand at 159.654 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x remove 155,521 + BWI76_RS00765 0.21 -0.1 155,521 + BWI76_RS00765 0.21 -0.2 155,973 - BWI76_RS00765 0.65 -0.5 156,005 + BWI76_RS00765 0.68 +0.5 156,005 + BWI76_RS00765 0.68 -0.6 156,005 + BWI76_RS00765 0.68 -0.7 156,041 + BWI76_RS00765 0.72 -0.3 156,059 + BWI76_RS00765 0.73 +0.1 156,362 + -0.6 156,487 - +0.1 159,493 + BWI76_RS00780 0.83 +0.4 159,623 - -0.5 159,654 + -0.9 159,654 + -0.1
Or see this region's nucleotide sequence